Wall clock time and date at job start Tue Mar 31 2020 11:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47020 * 2 1 4 4 C 1.53005 * 109.46812 * 119.99912 * 2 1 3 5 5 C 1.50696 * 109.47232 * 294.99811 * 4 2 1 6 6 H 1.08003 * 120.00326 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99848 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00481 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99819 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47311 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47229 * 120.00275 * 9 7 5 12 12 H 1.48499 * 109.47392 * 240.00059 * 9 7 5 13 13 C 1.53002 * 109.47058 * 239.99883 * 2 1 3 14 14 N 1.46898 * 109.47010 * 65.00204 * 13 2 1 15 15 C 1.46904 * 110.99950 * 66.04706 * 14 13 2 16 16 C 1.46900 * 111.00044 * 189.99655 * 14 13 2 17 17 C 1.50695 * 109.47278 * 163.21540 * 16 14 13 18 18 C 1.38122 * 120.04274 * 259.12975 * 17 16 14 19 19 C 1.38264 * 120.07839 * 180.27566 * 18 17 16 20 20 C 1.38312 * 120.14730 * 359.70276 * 19 18 17 21 21 C 1.38074 * 120.07333 * 0.02562 * 20 19 18 22 22 C 1.38895 * 120.03798 * 78.85260 * 17 16 14 23 23 N 1.39680 * 120.06966 * 0.02562 * 22 17 16 24 24 C 1.48531 * 110.99601 * 97.53324 * 23 22 17 25 25 C 1.54940 * 103.22474 * 159.71765 * 24 23 22 26 26 C 1.54597 * 102.92372 * 322.58427 * 25 24 23 27 27 C 1.47898 * 110.99829 * 214.92732 * 23 22 17 28 28 H 1.09001 * 109.47327 * 59.99708 * 1 2 3 29 29 H 1.09004 * 109.47482 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47132 * 299.99953 * 1 2 3 31 31 H 1.09000 * 109.46749 * 55.00197 * 4 2 1 32 32 H 1.08998 * 109.46674 * 175.00089 * 4 2 1 33 33 H 0.96999 * 120.00562 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.46945 * 305.00311 * 13 2 1 35 35 H 1.09003 * 109.46450 * 185.00165 * 13 2 1 36 36 H 1.08998 * 109.47022 * 192.18878 * 15 14 13 37 37 H 1.09002 * 109.47012 * 312.18310 * 15 14 13 38 38 H 1.08998 * 109.47432 * 72.18210 * 15 14 13 39 39 H 1.09003 * 109.46837 * 43.21704 * 16 14 13 40 40 H 1.08990 * 109.46955 * 283.22079 * 16 14 13 41 41 H 1.08001 * 119.96249 * 359.97438 * 18 17 16 42 42 H 1.07997 * 119.92752 * 179.71890 * 19 18 17 43 43 H 1.08001 * 119.95677 * 179.97438 * 20 19 18 44 44 H 1.08001 * 120.03740 * 179.97438 * 21 20 19 45 45 H 1.09001 * 110.66954 * 278.14844 * 24 23 22 46 46 H 1.08995 * 110.67279 * 41.28208 * 24 23 22 47 47 H 1.08995 * 110.72585 * 204.22281 * 25 24 23 48 48 H 1.09008 * 110.72105 * 80.94233 * 25 24 23 49 49 H 1.08997 * 110.30575 * 263.04008 * 26 25 24 50 50 H 1.08994 * 110.30839 * 140.87117 * 26 25 24 51 51 H 1.09003 * 109.91596 * 333.51047 * 27 23 22 52 52 H 1.09003 * 109.92164 * 94.80451 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3758 7 6 1.9923 -0.4023 3.7283 8 7 2.6753 -1.5193 3.8513 9 14 1.4975 0.5621 5.2497 10 1 0.7402 1.7732 4.8435 11 1 0.6431 -0.2872 6.1181 12 1 2.7152 0.9667 5.9971 13 6 2.0400 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.3342 1.3374 -2.4894 16 6 1.9125 -0.7357 -3.6671 17 6 1.1465 -0.1331 -4.8164 18 6 -0.0361 -0.7096 -5.2372 19 6 -0.7366 -0.1606 -6.2953 20 6 -0.2593 0.9707 -6.9320 21 6 0.9192 1.5553 -6.5128 22 6 1.6258 1.0061 -5.4502 23 7 2.8186 1.5948 -5.0238 24 6 3.9588 1.1607 -5.8710 25 6 5.0235 2.2584 -5.6218 26 6 4.1748 3.5466 -5.5202 27 6 2.7585 3.0670 -5.1520 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6053 -1.7198 1.2951 32 1 3.1262 -0.7995 1.2056 33 1 2.9219 -1.8427 4.7319 34 1 1.6053 -1.7198 -1.2951 35 1 3.1263 -0.7995 -1.2055 36 1 1.8753 1.9632 -3.2548 37 1 2.2464 1.8267 -1.5194 38 1 3.3874 1.1868 -2.7264 39 1 1.5936 -1.7675 -3.5192 40 1 2.9791 -0.7136 -3.8900 41 1 -0.4115 -1.5931 -4.7423 42 1 -1.6586 -0.6160 -6.6252 43 1 -0.8088 1.3967 -7.7585 44 1 1.2916 2.4385 -7.0107 45 1 4.3279 0.1868 -5.5497 46 1 3.6700 1.1363 -6.9217 47 1 5.7181 2.3193 -6.4596 48 1 5.5572 2.0735 -4.6895 49 1 4.1611 4.0671 -6.4777 50 1 4.5682 4.1982 -4.7400 51 1 2.0567 3.3428 -5.9392 52 1 2.4510 3.5100 -4.2047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602436273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:37 Heat of formation + Delta-G solvation = 29.235509 kcal Electronic energy + Delta-G solvation = -27421.393277 eV Core-core repulsion = 23999.293060 eV Total energy + Delta-G solvation = -3422.100217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54017 -39.01886 -38.51045 -36.11631 -34.18015 -33.42879 -32.30495 -29.88866 -29.56240 -28.94631 -27.91650 -27.24975 -25.39098 -24.14188 -23.34910 -22.10164 -21.39974 -21.32131 -20.44220 -18.49869 -18.19002 -17.25281 -16.73515 -16.62936 -16.39738 -16.14268 -15.53480 -15.36803 -15.22622 -15.18313 -14.61977 -14.27323 -14.21379 -14.03386 -13.74311 -13.56096 -13.26543 -13.18437 -13.03621 -12.88823 -12.76461 -12.56244 -12.50530 -12.37857 -12.24336 -12.15606 -12.08518 -11.99358 -11.86903 -11.80255 -11.36334 -11.33256 -11.03352 -10.86375 -10.52304 -9.87845 -9.69379 -9.21377 -8.89108 -8.16267 -6.25222 0.41513 0.48891 1.40094 1.40372 1.53834 2.42838 2.74338 2.95876 3.16885 3.35558 3.71684 3.86919 3.92385 3.96526 4.07268 4.10952 4.19020 4.33867 4.35773 4.42244 4.48923 4.55787 4.57525 4.60271 4.70443 4.76948 4.79162 4.87053 4.90862 4.94260 4.94815 4.97818 5.03031 5.05036 5.09409 5.13954 5.17863 5.27278 5.29138 5.37793 5.49130 5.50675 5.55092 5.57835 5.61102 5.69717 5.82870 5.86171 5.90994 5.99733 6.22786 6.32354 6.36013 6.49422 6.90538 7.42796 8.96080 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.003028 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.592967 B = 9243.794196 C =10138.150500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.070 4.070 3 H 0.051 0.949 4 C 0.035 3.965 5 C -0.527 4.527 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.074 3.926 14 N -0.531 5.531 15 C 0.048 3.952 16 C 0.107 3.893 17 C -0.072 4.072 18 C -0.106 4.106 19 C -0.132 4.132 20 C -0.111 4.111 21 C -0.165 4.165 22 C 0.083 3.917 23 N -0.485 5.485 24 C 0.040 3.960 25 C -0.119 4.119 26 C -0.124 4.124 27 C 0.024 3.976 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.036 0.964 31 H -0.009 1.009 32 H -0.017 1.017 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.014 0.986 36 H 0.085 0.915 37 H 0.036 0.964 38 H 0.026 0.974 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.128 0.872 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.136 0.864 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.074 0.926 51 H 0.065 0.935 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.047 7.740 -27.430 28.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.003 4.003 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.205 1.205 13 C -0.054 4.054 14 N -0.255 5.255 15 C -0.100 4.100 16 C -0.020 4.020 17 C -0.074 4.074 18 C -0.125 4.125 19 C -0.150 4.150 20 C -0.130 4.130 21 C -0.185 4.185 22 C -0.012 4.012 23 N -0.206 5.206 24 C -0.085 4.085 25 C -0.157 4.157 26 C -0.162 4.162 27 C -0.103 4.103 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.009 0.991 32 H 0.002 0.998 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.033 0.967 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.146 0.854 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.154 0.846 45 H 0.090 0.910 46 H 0.071 0.929 47 H 0.107 0.893 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.093 0.907 51 H 0.084 0.916 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.363 7.571 -26.728 27.813 hybrid contribution 0.751 0.052 0.525 0.918 sum -0.612 7.623 -26.203 27.296 Atomic orbital electron populations 1.21428 0.94772 1.00288 1.00094 1.21025 0.96593 0.98338 0.92968 0.93095 1.18999 0.93911 0.94687 0.92699 1.21648 1.34255 1.08471 0.92086 0.92305 1.25946 0.95276 0.96117 1.02604 1.70107 1.40397 1.22949 1.24185 0.85457 0.78088 0.78894 0.78980 1.18662 1.20437 1.20469 1.22034 0.96504 0.96939 0.89929 1.62006 1.58377 1.04388 1.00708 1.22547 0.96349 0.90852 1.00221 1.20828 0.97212 0.96151 0.87810 1.19638 0.95875 0.95888 0.95988 1.21184 0.93839 1.00472 0.97044 1.21400 1.00638 0.96706 0.96219 1.21293 0.95828 0.95716 1.00177 1.21704 0.97601 1.02039 0.97112 1.18939 0.93048 0.95120 0.94076 1.62703 1.01941 1.06298 1.49661 1.23280 0.90587 0.99471 0.95130 1.22470 0.97031 0.93638 1.02533 1.22369 0.93530 0.97739 1.02597 1.23164 0.98562 0.86745 1.01810 0.92096 0.94421 0.94508 0.99101 0.99819 0.92947 0.91619 0.96748 0.89681 0.94500 0.95574 0.90892 0.94271 0.85388 0.84077 0.83940 0.84612 0.91010 0.92885 0.89262 0.91657 0.89879 0.90710 0.91647 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 8.89 71.98 0.64 -3.80 16 2 C -0.07 -3.09 2.28 -10.79 -0.02 -3.11 16 3 H 0.05 2.29 6.14 -2.39 -0.01 2.28 16 4 C 0.03 1.90 4.45 29.85 0.13 2.03 16 5 C -0.53 -30.74 8.41 25.60 0.22 -30.53 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 8 N -0.94 -58.32 13.29 21.45 0.28 -58.03 16 9 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 10 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C 0.07 2.77 4.34 86.30 0.37 3.15 16 14 N -0.53 -17.06 4.16 -927.07 -3.85 -20.91 16 15 C 0.05 1.49 7.88 127.69 1.01 2.50 16 16 C 0.11 2.95 5.01 85.56 0.43 3.38 16 17 C -0.07 -1.77 5.31 -19.74 -0.10 -1.87 16 18 C -0.11 -2.32 9.66 22.25 0.21 -2.11 16 19 C -0.13 -2.35 10.04 22.29 0.22 -2.13 16 20 C -0.11 -1.84 10.04 22.25 0.22 -1.62 16 21 C -0.16 -3.01 8.77 22.40 0.20 -2.81 16 22 C 0.08 1.83 3.94 38.21 0.15 1.98 16 23 N -0.49 -9.94 1.49 -682.77 -1.02 -10.95 16 24 C 0.04 0.71 6.48 86.65 0.56 1.27 16 25 C -0.12 -1.70 7.06 31.80 0.22 -1.48 16 26 C -0.12 -1.66 6.93 31.47 0.22 -1.44 16 27 C 0.02 0.41 5.90 86.45 0.51 0.92 16 28 H 0.06 2.25 7.75 -2.39 -0.02 2.24 16 29 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 31 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 33 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.07 2.44 7.85 -2.39 -0.02 2.42 16 35 H 0.01 0.56 8.12 -2.39 -0.02 0.55 16 36 H 0.08 2.45 3.84 -2.39 -0.01 2.44 16 37 H 0.04 1.26 5.95 -2.39 -0.01 1.25 16 38 H 0.03 0.81 7.42 -2.39 -0.02 0.79 16 39 H 0.07 1.94 7.64 -2.39 -0.02 1.92 16 40 H 0.04 1.10 7.28 -2.39 -0.02 1.08 16 41 H 0.13 2.60 8.03 -2.91 -0.02 2.57 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.14 1.99 6.10 -2.91 -0.02 1.98 16 45 H 0.07 1.39 7.84 -2.39 -0.02 1.37 16 46 H 0.05 0.85 7.88 -2.39 -0.02 0.84 16 47 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 49 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.07 0.99 5.13 -2.39 -0.01 0.98 16 52 H 0.07 1.43 7.06 -2.39 -0.02 1.42 16 Total: -1.00 -66.54 390.10 3.97 -62.57 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.87 Total: 15.16 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 5.65 Total: -35.37 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -4.58 Total: -89.90 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -66.54 3.97 -62.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602436273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.805 kcal (2) G-P(sol) polarization free energy of solvation -66.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds