Wall clock time and date at job start Tue Mar 31 2020 11:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47369 * 2 1 4 4 C 1.53003 * 109.46728 * 119.99828 * 2 1 3 5 5 C 1.50698 * 109.47174 * 295.00047 * 4 2 1 6 6 H 1.07998 * 120.00026 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00085 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00214 * 359.72253 * 7 5 4 9 9 Si 1.86803 * 120.00105 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47208 * 179.72362 * 9 7 5 11 11 H 1.48506 * 109.46831 * 299.72417 * 9 7 5 12 12 H 1.48501 * 109.46810 * 59.72214 * 9 7 5 13 13 C 1.53000 * 109.47331 * 239.99427 * 2 1 3 14 14 N 1.46900 * 109.46636 * 63.97662 * 13 2 1 15 15 C 1.46852 * 111.00087 * 200.17893 * 14 13 2 16 16 C 1.53030 * 109.52657 * 174.16484 * 15 14 13 17 17 C 1.53122 * 109.27841 * 59.17957 * 16 15 14 18 18 N 1.46504 * 109.57636 * 182.41130 * 17 16 15 19 19 C 1.46501 * 119.99745 * 55.88089 * 18 17 16 20 20 C 1.39670 * 119.99840 * 235.88199 * 18 17 16 21 21 C 1.38917 * 120.07209 * 185.16609 * 20 18 17 22 22 C 1.38103 * 119.92166 * 179.76967 * 21 20 18 23 23 C 1.38295 * 120.07484 * 0.50974 * 22 21 20 24 24 C 1.38278 * 120.15112 * 359.74577 * 23 22 21 25 25 C 1.38109 * 120.07259 * 359.97438 * 24 23 22 26 26 C 1.53120 * 109.15986 * 302.34553 * 17 16 15 27 27 C 1.46850 * 110.99929 * 75.97345 * 14 13 2 28 28 H 1.08999 * 109.47038 * 65.00680 * 1 2 3 29 29 H 1.08998 * 109.47416 * 185.00285 * 1 2 3 30 30 H 1.09003 * 109.47601 * 305.00870 * 1 2 3 31 31 H 1.09004 * 109.47142 * 174.99924 * 4 2 1 32 32 H 1.09006 * 109.47267 * 55.00020 * 4 2 1 33 33 H 0.97007 * 119.99516 * 0.27700 * 8 7 5 34 34 H 1.08995 * 109.47116 * 183.98030 * 13 2 1 35 35 H 1.09003 * 109.47073 * 303.98516 * 13 2 1 36 36 H 1.09000 * 109.46114 * 294.18273 * 15 14 13 37 37 H 1.09003 * 109.45533 * 54.14742 * 15 14 13 38 38 H 1.09005 * 109.50393 * 299.24386 * 16 15 14 39 39 H 1.09000 * 109.50841 * 179.11869 * 16 15 14 40 40 H 1.09001 * 109.52132 * 62.25153 * 17 16 15 41 41 H 1.09003 * 109.46903 * 90.00430 * 19 18 17 42 42 H 1.09004 * 109.46753 * 210.00139 * 19 18 17 43 43 H 1.08996 * 109.47151 * 329.99974 * 19 18 17 44 44 H 1.07999 * 120.03636 * 0.02562 * 21 20 18 45 45 H 1.08001 * 119.96261 * 180.25469 * 22 21 20 46 46 H 1.08003 * 119.92401 * 179.72060 * 23 22 21 47 47 H 1.07995 * 119.96779 * 179.97438 * 24 23 22 48 48 H 1.08003 * 120.03522 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.50690 * 297.71558 * 26 17 16 50 50 H 1.09005 * 109.53411 * 177.61050 * 26 17 16 51 51 H 1.09001 * 109.46179 * 305.85426 * 27 14 13 52 52 H 1.09005 * 109.46139 * 65.83112 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9930 -0.4016 3.7283 8 7 2.6718 -1.5212 3.8516 9 14 1.4994 0.5635 5.2496 10 1 1.9889 -0.1397 6.4624 11 1 2.0971 1.9217 5.1897 12 1 0.0197 0.6759 5.3059 13 6 2.0401 -0.7214 -1.2492 14 7 1.6304 0.0243 -2.4467 15 6 1.6648 -0.8334 -3.6382 16 6 1.0957 -0.0689 -4.8354 17 6 1.9274 1.1953 -5.0696 18 7 1.3537 1.9620 -6.1784 19 6 -0.0499 2.3791 -6.1315 20 6 2.1449 2.2951 -7.2801 21 6 1.6353 3.1119 -8.2816 22 6 2.4219 3.4432 -9.3672 23 6 3.7120 2.9542 -9.4632 24 6 4.2205 2.1367 -8.4708 25 6 3.4412 1.8061 -7.3795 26 6 1.9149 2.0478 -3.7977 27 6 2.4602 1.2218 -2.6305 28 1 -0.3633 0.4342 -0.9314 29 1 -0.3634 -1.0237 0.0896 30 1 -0.3634 0.5896 0.8417 31 1 3.1263 -0.7995 1.2057 32 1 1.6053 -1.7198 1.2953 33 1 2.9285 -2.0222 3.0615 34 1 3.1277 -0.7835 -1.2142 35 1 1.6196 -1.7264 -1.2855 36 1 2.6946 -1.1224 -3.8480 37 1 1.0661 -1.7268 -3.4598 38 1 0.0614 0.2086 -4.6318 39 1 1.1358 -0.7003 -5.7230 40 1 2.9531 0.9169 -5.3115 41 1 -0.1224 3.3579 -5.6573 42 1 -0.4460 2.4363 -7.1454 43 1 -0.6256 1.6534 -5.5570 44 1 0.6265 3.4907 -8.2091 45 1 2.0278 4.0815 -10.1441 46 1 4.3235 3.2112 -10.3156 47 1 5.2282 1.7562 -8.5490 48 1 3.8389 1.1671 -6.6049 49 1 0.8935 2.3584 -3.5777 50 1 2.5399 2.9289 -3.9433 51 1 2.4394 1.8213 -1.7203 52 1 3.4863 0.9232 -2.8452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602452259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:21 Heat of formation + Delta-G solvation = 20.004894 kcal Electronic energy + Delta-G solvation = -26612.378271 eV Core-core repulsion = 23189.877785 eV Total energy + Delta-G solvation = -3422.500486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.21880 -38.88114 -36.73359 -34.99479 -32.78705 -31.51053 -31.04401 -30.92692 -29.60001 -27.03120 -26.39099 -25.39252 -23.58826 -23.27086 -22.55356 -22.03674 -20.92479 -19.58488 -19.08227 -17.88204 -16.82881 -16.28134 -15.72779 -15.31752 -15.12504 -14.75877 -14.68915 -14.46431 -14.00059 -13.80359 -13.74816 -13.65587 -13.47321 -13.09421 -12.97710 -12.78551 -12.34385 -12.25550 -12.05371 -11.71104 -11.64384 -11.36423 -11.30097 -11.26183 -11.04571 -10.85111 -10.82810 -10.63740 -10.53315 -10.23094 -10.08378 -9.94415 -9.68599 -9.39688 -9.11197 -8.47162 -8.28384 -8.09745 -7.45582 -6.31033 -3.98881 1.25491 1.43755 2.86696 3.45712 3.47700 3.66222 3.71831 4.01606 4.45148 4.58340 4.62680 4.70374 4.76567 4.89948 4.96542 5.05165 5.10413 5.17643 5.25027 5.28280 5.33267 5.43391 5.45198 5.47956 5.51518 5.54906 5.56729 5.57723 5.77862 5.79150 5.84240 5.92714 5.96031 6.01209 6.07526 6.10759 6.17480 6.29609 6.32647 6.44751 6.46097 6.62657 6.69440 6.90401 7.06320 7.08184 7.12156 7.29054 7.31483 7.35025 7.44738 7.62029 8.28925 8.52043 8.94229 9.72383 11.09294 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028849 B = 0.002201 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.344215 B =12716.806682 C =12785.756901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.070 4.070 3 H 0.056 0.944 4 C 0.013 3.987 5 C -0.592 4.592 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.060 3.940 14 N -0.534 5.534 15 C 0.058 3.942 16 C -0.124 4.124 17 C 0.149 3.851 18 N -0.625 5.625 19 C 0.091 3.909 20 C 0.222 3.778 21 C -0.201 4.201 22 C -0.073 4.073 23 C -0.186 4.186 24 C -0.072 4.072 25 C -0.202 4.202 26 C -0.123 4.123 27 C 0.057 3.943 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.002 0.998 32 H 0.006 0.994 33 H 0.267 0.733 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.084 0.916 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 7.199 -26.623 27.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.089 4.089 3 H 0.074 0.926 4 C -0.024 4.024 5 C -0.630 4.630 6 H 0.067 0.933 7 C -0.192 4.192 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.067 4.067 14 N -0.258 5.258 15 C -0.071 4.071 16 C -0.163 4.163 17 C 0.045 3.955 18 N -0.334 5.334 19 C -0.052 4.052 20 C 0.119 3.881 21 C -0.224 4.224 22 C -0.092 4.092 23 C -0.206 4.206 24 C -0.091 4.091 25 C -0.224 4.224 26 C -0.162 4.162 27 C -0.071 4.071 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.020 0.980 32 H 0.024 0.976 33 H 0.078 0.922 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.133 0.867 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.092 0.908 50 H 0.085 0.915 51 H 0.102 0.898 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.223 7.312 -24.747 25.900 hybrid contribution 0.761 -0.283 -1.765 1.942 sum -1.462 7.030 -26.511 27.466 Atomic orbital electron populations 1.21549 0.95619 1.00519 1.00077 1.21030 0.96031 0.98911 0.92974 0.92607 1.19267 0.95071 0.95589 0.92475 1.22019 1.38530 1.10218 0.92248 0.93267 1.25824 0.94787 0.97177 1.01385 1.70784 1.36342 1.14707 1.33434 0.83573 0.76058 0.75136 0.75684 1.20877 1.21540 1.21488 1.22317 0.97507 0.97111 0.89755 1.61959 1.54064 1.07131 1.02670 1.22037 0.99103 0.95899 0.90040 1.21964 1.00816 0.96027 0.97506 1.21170 0.97732 0.90900 0.85701 1.46584 1.09841 1.58967 1.17982 1.21622 0.81646 0.99963 1.02001 1.17882 0.90540 0.92622 0.87022 1.20676 1.01040 1.04335 0.96317 1.20877 0.93868 0.97739 0.96691 1.20877 0.96554 1.02731 1.00451 1.20888 0.98864 0.96178 0.93121 1.20749 0.94112 1.06444 1.01084 1.21966 1.02673 0.98016 0.93576 1.22069 0.93910 0.92478 0.98654 0.93624 0.94389 0.92977 0.97973 0.97580 0.92227 0.95206 0.91500 0.95250 0.90505 0.90603 0.91528 0.89537 0.93413 0.91674 0.90992 0.86208 0.86449 0.86711 0.86389 0.86121 0.90760 0.91546 0.89807 0.95217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.86 37.16 0.33 -2.02 16 2 C -0.07 -1.44 2.39 -90.62 -0.22 -1.65 16 3 H 0.06 1.18 6.74 -51.93 -0.35 0.83 16 4 C 0.01 0.34 3.76 -27.88 -0.10 0.24 16 5 C -0.59 -16.79 8.47 -34.44 -0.29 -17.08 16 6 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.32 13.65 55.43 0.76 -27.57 16 9 Si 1.07 25.58 29.90 -169.99 -5.08 20.49 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.02 4.41 -3.82 -0.02 1.00 16 14 N -0.53 -7.50 3.91 -234.67 -0.92 -8.41 16 15 C 0.06 0.68 5.42 -3.83 -0.02 0.66 16 16 C -0.12 -1.25 5.33 -26.65 -0.14 -1.39 16 17 C 0.15 1.50 2.53 -67.80 -0.17 1.33 16 18 N -0.62 -6.09 2.90 -171.85 -0.50 -6.59 16 19 C 0.09 0.74 9.24 59.85 0.55 1.29 16 20 C 0.22 2.30 6.54 -83.79 -0.55 1.76 16 21 C -0.20 -1.91 9.17 -39.38 -0.36 -2.27 16 22 C -0.07 -0.64 10.04 -39.61 -0.40 -1.04 16 23 C -0.19 -1.64 10.04 -39.55 -0.40 -2.04 16 24 C -0.07 -0.66 10.04 -39.61 -0.40 -1.06 16 25 C -0.20 -2.06 9.31 -39.38 -0.37 -2.43 16 26 C -0.12 -1.37 5.46 -26.65 -0.15 -1.51 16 27 C 0.06 0.75 5.29 -3.83 -0.02 0.73 16 28 H 0.04 0.79 7.58 -51.93 -0.39 0.40 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 1.09 7.10 -51.93 -0.37 0.72 16 31 H 0.00 0.05 8.01 -51.93 -0.42 -0.36 16 32 H 0.01 0.16 8.00 -51.93 -0.42 -0.26 16 33 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 34 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 35 H 0.07 1.12 7.79 -51.93 -0.40 0.72 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 38 H 0.08 0.79 6.45 -51.93 -0.33 0.46 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.89 5.31 -51.93 -0.28 0.62 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 43 H 0.07 0.57 6.18 -51.93 -0.32 0.25 16 44 H 0.12 0.97 6.29 -52.49 -0.33 0.64 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.11 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 48 H 0.12 1.17 5.74 -52.48 -0.30 0.87 16 49 H 0.07 0.87 7.70 -51.93 -0.40 0.47 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.08 1.22 6.67 -51.93 -0.35 0.88 16 52 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -30.79 392.69 -11.72 -42.51 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -9.09 Total: -1.09 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -2.81 Total: -25.26 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.66 Total: -42.57 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.49 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.79 -11.72 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602452259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.515 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds