Wall clock time and date at job start Tue Mar 31 2020 11:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47369 * 2 1 4 4 C 1.53003 * 109.46728 * 119.99828 * 2 1 3 5 5 C 1.50698 * 109.47174 * 295.00047 * 4 2 1 6 6 H 1.07998 * 120.00026 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00085 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00214 * 359.72253 * 7 5 4 9 9 Si 1.86803 * 120.00105 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47208 * 179.72362 * 9 7 5 11 11 H 1.48506 * 109.46831 * 299.72417 * 9 7 5 12 12 H 1.48501 * 109.46810 * 59.72214 * 9 7 5 13 13 C 1.53000 * 109.47331 * 239.99427 * 2 1 3 14 14 N 1.46900 * 109.46636 * 63.97662 * 13 2 1 15 15 C 1.46852 * 111.00087 * 200.17893 * 14 13 2 16 16 C 1.53030 * 109.52657 * 174.16484 * 15 14 13 17 17 C 1.53122 * 109.27841 * 59.17957 * 16 15 14 18 18 N 1.46504 * 109.57636 * 182.41130 * 17 16 15 19 19 C 1.46501 * 119.99745 * 55.88089 * 18 17 16 20 20 C 1.39670 * 119.99840 * 235.88199 * 18 17 16 21 21 C 1.38917 * 120.07209 * 185.16609 * 20 18 17 22 22 C 1.38103 * 119.92166 * 179.76967 * 21 20 18 23 23 C 1.38295 * 120.07484 * 0.50974 * 22 21 20 24 24 C 1.38278 * 120.15112 * 359.74577 * 23 22 21 25 25 C 1.38109 * 120.07259 * 359.97438 * 24 23 22 26 26 C 1.53120 * 109.15986 * 302.34553 * 17 16 15 27 27 C 1.46850 * 110.99929 * 75.97345 * 14 13 2 28 28 H 1.08999 * 109.47038 * 65.00680 * 1 2 3 29 29 H 1.08998 * 109.47416 * 185.00285 * 1 2 3 30 30 H 1.09003 * 109.47601 * 305.00870 * 1 2 3 31 31 H 1.09004 * 109.47142 * 174.99924 * 4 2 1 32 32 H 1.09006 * 109.47267 * 55.00020 * 4 2 1 33 33 H 0.97007 * 119.99516 * 0.27700 * 8 7 5 34 34 H 1.08995 * 109.47116 * 183.98030 * 13 2 1 35 35 H 1.09003 * 109.47073 * 303.98516 * 13 2 1 36 36 H 1.09000 * 109.46114 * 294.18273 * 15 14 13 37 37 H 1.09003 * 109.45533 * 54.14742 * 15 14 13 38 38 H 1.09005 * 109.50393 * 299.24386 * 16 15 14 39 39 H 1.09000 * 109.50841 * 179.11869 * 16 15 14 40 40 H 1.09001 * 109.52132 * 62.25153 * 17 16 15 41 41 H 1.09003 * 109.46903 * 90.00430 * 19 18 17 42 42 H 1.09004 * 109.46753 * 210.00139 * 19 18 17 43 43 H 1.08996 * 109.47151 * 329.99974 * 19 18 17 44 44 H 1.07999 * 120.03636 * 0.02562 * 21 20 18 45 45 H 1.08001 * 119.96261 * 180.25469 * 22 21 20 46 46 H 1.08003 * 119.92401 * 179.72060 * 23 22 21 47 47 H 1.07995 * 119.96779 * 179.97438 * 24 23 22 48 48 H 1.08003 * 120.03522 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.50690 * 297.71558 * 26 17 16 50 50 H 1.09005 * 109.53411 * 177.61050 * 26 17 16 51 51 H 1.09001 * 109.46179 * 305.85426 * 27 14 13 52 52 H 1.09005 * 109.46139 * 65.83112 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9930 -0.4016 3.7283 8 7 2.6718 -1.5212 3.8516 9 14 1.4994 0.5635 5.2496 10 1 1.9889 -0.1397 6.4624 11 1 2.0971 1.9217 5.1897 12 1 0.0197 0.6759 5.3059 13 6 2.0401 -0.7214 -1.2492 14 7 1.6304 0.0243 -2.4467 15 6 1.6648 -0.8334 -3.6382 16 6 1.0957 -0.0689 -4.8354 17 6 1.9274 1.1953 -5.0696 18 7 1.3537 1.9620 -6.1784 19 6 -0.0499 2.3791 -6.1315 20 6 2.1449 2.2951 -7.2801 21 6 1.6353 3.1119 -8.2816 22 6 2.4219 3.4432 -9.3672 23 6 3.7120 2.9542 -9.4632 24 6 4.2205 2.1367 -8.4708 25 6 3.4412 1.8061 -7.3795 26 6 1.9149 2.0478 -3.7977 27 6 2.4602 1.2218 -2.6305 28 1 -0.3633 0.4342 -0.9314 29 1 -0.3634 -1.0237 0.0896 30 1 -0.3634 0.5896 0.8417 31 1 3.1263 -0.7995 1.2057 32 1 1.6053 -1.7198 1.2953 33 1 2.9285 -2.0222 3.0615 34 1 3.1277 -0.7835 -1.2142 35 1 1.6196 -1.7264 -1.2855 36 1 2.6946 -1.1224 -3.8480 37 1 1.0661 -1.7268 -3.4598 38 1 0.0614 0.2086 -4.6318 39 1 1.1358 -0.7003 -5.7230 40 1 2.9531 0.9169 -5.3115 41 1 -0.1224 3.3579 -5.6573 42 1 -0.4460 2.4363 -7.1454 43 1 -0.6256 1.6534 -5.5570 44 1 0.6265 3.4907 -8.2091 45 1 2.0278 4.0815 -10.1441 46 1 4.3235 3.2112 -10.3156 47 1 5.2282 1.7562 -8.5490 48 1 3.8389 1.1671 -6.6049 49 1 0.8935 2.3584 -3.5777 50 1 2.5399 2.9289 -3.9433 51 1 2.4394 1.8213 -1.7203 52 1 3.4863 0.9232 -2.8452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602452259.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:20 Heat of formation + Delta-G solvation = 5.311827 kcal Electronic energy + Delta-G solvation = -26613.015410 eV Core-core repulsion = 23189.877785 eV Total energy + Delta-G solvation = -3423.137625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.02976 -39.82238 -37.86145 -36.43374 -34.53127 -32.71395 -31.90089 -31.80299 -30.33368 -28.52318 -27.83036 -26.60175 -25.08067 -24.24943 -23.80137 -22.95819 -21.76388 -20.73197 -20.43785 -18.89841 -18.59034 -17.25039 -16.41304 -16.39445 -16.16115 -16.05494 -15.63525 -15.54738 -15.31703 -15.22713 -14.91031 -14.63470 -14.48963 -14.22335 -14.01977 -13.70113 -13.50090 -13.46525 -13.32910 -13.03084 -12.90854 -12.75457 -12.54666 -12.44108 -12.20151 -12.16712 -11.96161 -11.89941 -11.78493 -11.63383 -11.43299 -11.32422 -11.26031 -10.65629 -10.55448 -10.51885 -9.79476 -9.28419 -8.65126 -8.16871 -6.33957 0.57123 0.74506 1.51831 1.60416 1.79344 2.14486 2.57305 2.87521 3.02858 3.18604 3.63899 3.77588 3.87146 4.01731 4.05950 4.13530 4.20257 4.26117 4.27818 4.34621 4.41418 4.42149 4.45031 4.56621 4.62514 4.65795 4.66729 4.73781 4.75810 4.80326 4.84423 4.87644 4.90083 4.92702 4.97957 5.02560 5.09308 5.13920 5.19024 5.29428 5.33476 5.39133 5.41284 5.49378 5.65147 5.65867 5.78853 6.00134 6.04115 6.10676 6.18222 6.23440 6.37543 6.62739 6.63041 7.46580 8.75371 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028849 B = 0.002201 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.344215 B =12716.806682 C =12785.756901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.062 4.062 3 H 0.049 0.951 4 C 0.016 3.984 5 C -0.603 4.603 6 H 0.051 0.949 7 C -0.044 4.044 8 N -0.941 5.941 9 Si 1.115 2.885 10 H -0.285 1.285 11 H -0.270 1.270 12 H -0.269 1.269 13 C 0.073 3.927 14 N -0.534 5.534 15 C 0.057 3.943 16 C -0.113 4.113 17 C 0.154 3.846 18 N -0.627 5.627 19 C 0.089 3.911 20 C 0.206 3.794 21 C -0.210 4.210 22 C -0.078 4.078 23 C -0.193 4.193 24 C -0.081 4.081 25 C -0.219 4.219 26 C -0.112 4.112 27 C 0.058 3.942 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.033 0.967 31 H -0.020 1.020 32 H -0.013 1.013 33 H 0.254 0.746 34 H 0.021 0.979 35 H 0.069 0.931 36 H 0.033 0.967 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.131 0.869 45 H 0.139 0.861 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.120 0.880 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.066 0.934 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 8.435 -28.345 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.081 4.081 3 H 0.067 0.933 4 C -0.021 4.021 5 C -0.641 4.641 6 H 0.069 0.931 7 C -0.241 4.241 8 N -0.579 5.579 9 Si 0.937 3.063 10 H -0.211 1.211 11 H -0.195 1.195 12 H -0.194 1.194 13 C -0.055 4.055 14 N -0.259 5.259 15 C -0.071 4.071 16 C -0.152 4.152 17 C 0.050 3.950 18 N -0.337 5.337 19 C -0.054 4.054 20 C 0.104 3.896 21 C -0.232 4.232 22 C -0.097 4.097 23 C -0.213 4.213 24 C -0.100 4.100 25 C -0.241 4.241 26 C -0.151 4.151 27 C -0.070 4.070 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.052 0.948 31 H -0.002 1.002 32 H 0.005 0.995 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.149 0.851 45 H 0.157 0.843 46 H 0.151 0.849 47 H 0.150 0.850 48 H 0.138 0.862 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.084 0.916 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.141 8.559 -26.513 28.037 hybrid contribution 1.083 -0.657 -1.317 1.827 sum -2.058 7.902 -27.830 29.003 Atomic orbital electron populations 1.21436 0.94560 1.00117 1.00545 1.20852 0.96743 0.98105 0.92423 0.93305 1.19203 0.93597 0.94921 0.94411 1.22415 1.37920 1.10323 0.93409 0.93110 1.27399 0.94151 0.97331 1.05213 1.70921 1.38267 1.15992 1.32764 0.82961 0.76967 0.74530 0.71887 1.21055 1.19502 1.19413 1.22015 0.96818 0.96965 0.89723 1.61896 1.54010 1.07393 1.02584 1.22109 0.99617 0.95890 0.89464 1.21866 1.00550 0.95860 0.96936 1.21041 0.97842 0.90749 0.85409 1.46580 1.10348 1.59065 1.17657 1.21708 0.80853 0.99981 1.02810 1.18078 0.90819 0.93215 0.87521 1.20901 1.01770 1.04230 0.96346 1.21201 0.93851 0.97680 0.96964 1.21184 0.96935 1.02329 1.00860 1.21151 0.99577 0.96241 0.92991 1.20895 0.94508 1.07040 1.01644 1.21846 1.02238 0.97782 0.93221 1.22057 0.94102 0.92109 0.98771 0.91142 0.94754 0.94782 1.00151 0.99462 0.93705 0.96029 0.91289 0.94906 0.90116 0.90553 0.90487 0.89682 0.93400 0.90547 0.90719 0.85096 0.84343 0.84936 0.84962 0.86203 0.91050 0.91451 0.91582 0.95110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.20 8.86 71.98 0.64 -3.56 16 2 C -0.06 -2.56 2.39 -10.79 -0.03 -2.59 16 3 H 0.05 2.08 6.74 -2.39 -0.02 2.06 16 4 C 0.02 0.85 3.76 29.85 0.11 0.96 16 5 C -0.60 -34.69 8.47 25.60 0.22 -34.48 16 6 H 0.05 2.85 7.06 -2.91 -0.02 2.83 16 7 C -0.04 -2.61 5.46 84.66 0.46 -2.15 16 8 N -0.94 -59.48 13.65 21.45 0.29 -59.19 16 9 Si 1.12 51.15 29.90 68.60 2.05 53.20 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 C 0.07 2.45 4.41 86.30 0.38 2.83 16 14 N -0.53 -14.47 3.91 -896.35 -3.50 -17.97 16 15 C 0.06 1.25 5.42 86.32 0.47 1.72 16 16 C -0.11 -2.06 5.33 30.65 0.16 -1.90 16 17 C 0.15 2.88 2.53 45.07 0.11 2.99 16 18 N -0.63 -11.22 2.90 -697.60 -2.03 -13.24 16 19 C 0.09 1.27 9.24 127.77 1.18 2.46 16 20 C 0.21 3.98 6.54 38.22 0.25 4.23 16 21 C -0.21 -3.62 9.17 22.40 0.21 -3.41 16 22 C -0.08 -1.21 10.04 22.25 0.22 -0.99 16 23 C -0.19 -3.04 10.04 22.29 0.22 -2.81 16 24 C -0.08 -1.39 10.04 22.25 0.22 -1.16 16 25 C -0.22 -4.24 9.31 22.40 0.21 -4.03 16 26 C -0.11 -2.35 5.46 30.65 0.17 -2.18 16 27 C 0.06 1.49 5.29 86.32 0.46 1.94 16 28 H 0.07 2.35 7.58 -2.39 -0.02 2.33 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 1.40 7.10 -2.39 -0.02 1.39 16 31 H -0.02 -1.12 8.01 -2.39 -0.02 -1.13 16 32 H -0.01 -0.72 8.00 -2.38 -0.02 -0.74 16 33 H 0.25 16.23 7.22 -92.70 -0.67 15.56 16 34 H 0.02 0.76 8.00 -2.39 -0.02 0.74 16 35 H 0.07 2.30 7.79 -2.39 -0.02 2.28 16 36 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 1.72 7.93 -2.39 -0.02 1.71 16 38 H 0.08 1.41 6.45 -2.38 -0.02 1.40 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.65 5.31 -2.39 -0.01 1.63 16 41 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.08 0.91 6.43 -2.38 -0.02 0.90 16 43 H 0.07 1.02 6.18 -2.39 -0.01 1.01 16 44 H 0.13 1.85 6.29 -2.91 -0.02 1.84 16 45 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 46 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 47 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 48 H 0.12 2.24 5.74 -2.91 -0.02 2.22 16 49 H 0.07 1.56 7.70 -2.39 -0.02 1.54 16 50 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 51 H 0.07 1.92 6.67 -2.39 -0.02 1.91 16 52 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -66.45 392.69 3.45 -62.99 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.97 Total: 16.33 kcal Atomic # 6 Polarization: -47.79 SS G_CDS: 5.67 Total: -42.12 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -5.24 Total: -90.40 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.20 kcal Total: -66.45 3.45 -62.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602452259.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.303 kcal (2) G-P(sol) polarization free energy of solvation -66.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds