Wall clock time and date at job start Tue Mar 31 2020 11:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47308 * 2 1 4 4 C 1.53005 * 109.46802 * 119.99939 * 2 1 3 5 5 C 1.50696 * 109.47147 * 295.00063 * 4 2 1 6 6 H 1.08001 * 120.00506 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99817 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00021 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99909 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47153 * 89.99943 * 9 7 5 11 11 H 1.48505 * 109.47271 * 210.00061 * 9 7 5 12 12 H 1.48500 * 109.47310 * 329.99717 * 9 7 5 13 13 C 1.53000 * 109.47182 * 240.00074 * 2 1 3 14 14 N 1.46907 * 109.46929 * 177.69446 * 13 2 1 15 15 C 1.46999 * 110.99229 * 307.85082 * 14 13 2 16 16 C 1.53046 * 109.34085 * 176.82344 * 15 14 13 17 17 N 1.46959 * 109.37851 * 58.38992 * 16 15 14 18 18 C 1.46905 * 110.99748 * 176.79950 * 17 16 15 19 19 C 1.50703 * 109.47051 * 66.05017 * 18 17 16 20 20 C 1.38239 * 119.99731 * 269.72703 * 19 18 17 21 21 C 1.38227 * 119.99827 * 179.74587 * 20 19 18 22 22 C 1.38238 * 120.00145 * 0.52419 * 21 20 19 23 23 C 1.38233 * 119.99717 * 359.74821 * 22 21 20 24 24 C 1.38234 * 120.00028 * 89.99760 * 19 18 17 25 25 C 1.46949 * 110.88630 * 300.66893 * 17 16 15 26 26 C 1.46959 * 110.99579 * 184.04170 * 14 13 2 27 27 H 1.09008 * 109.50408 * 63.21277 * 26 14 13 28 28 C 1.52998 * 109.49304 * 303.15603 * 26 14 13 29 29 H 1.08995 * 109.47169 * 185.08151 * 1 2 3 30 30 H 1.08997 * 109.46929 * 305.08850 * 1 2 3 31 31 H 1.08995 * 109.46813 * 65.08072 * 1 2 3 32 32 H 1.08994 * 109.47114 * 55.00157 * 4 2 1 33 33 H 1.09003 * 109.46709 * 174.99876 * 4 2 1 34 34 H 0.97005 * 119.99854 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47145 * 57.69358 * 13 2 1 36 36 H 1.08996 * 109.46753 * 297.69178 * 13 2 1 37 37 H 1.08999 * 109.51713 * 56.85079 * 15 14 13 38 38 H 1.09001 * 109.48267 * 296.77949 * 15 14 13 39 39 H 1.08997 * 109.48968 * 298.41589 * 16 15 14 40 40 H 1.08994 * 109.49154 * 178.36657 * 16 15 14 41 41 H 1.09004 * 109.47070 * 186.04697 * 18 17 16 42 42 H 1.09004 * 109.47074 * 306.04934 * 18 17 16 43 43 H 1.08002 * 119.99610 * 359.97438 * 20 19 18 44 44 H 1.08002 * 120.00443 * 180.29349 * 21 20 19 45 45 H 1.07993 * 120.00721 * 179.76913 * 22 21 20 46 46 H 1.08004 * 120.00313 * 180.02562 * 23 22 21 47 47 H 1.08000 * 120.00053 * 0.02562 * 24 19 18 48 48 H 1.08993 * 109.49469 * 179.29058 * 25 17 16 49 49 H 1.09002 * 109.48615 * 299.33388 * 25 17 16 50 50 H 1.08999 * 109.46892 * 300.10980 * 28 26 14 51 51 H 1.08995 * 109.47071 * 60.10463 * 28 26 14 52 52 H 1.08991 * 109.47207 * 180.11236 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9931 -0.4018 3.7283 8 7 2.6771 -1.5183 3.8511 9 14 1.4995 0.5633 5.2496 10 1 0.1724 0.0953 5.7237 11 1 2.5092 0.3535 6.3182 12 1 1.4247 2.0085 4.9164 13 6 2.0400 -0.7212 -1.2492 14 7 3.5080 -0.6731 -1.2774 15 6 3.9929 0.7054 -1.1178 16 6 5.5227 0.7026 -1.0730 17 7 6.0456 0.1028 -2.3085 18 6 7.5136 0.1509 -2.3367 19 6 8.0662 -0.7321 -1.2477 20 6 8.3092 -0.2099 0.0090 21 6 8.8110 -1.0211 1.0093 22 6 9.0802 -2.3520 0.7501 23 6 8.8426 -2.8728 -0.5081 24 6 8.3354 -2.0630 -1.5070 25 6 5.5608 -1.2753 -2.4678 26 6 4.0310 -1.2730 -2.5129 27 1 3.6933 -0.6916 -3.3709 28 6 3.5218 -2.7103 -2.6378 29 1 -0.3633 -1.0236 0.0910 30 1 -0.3633 0.5907 0.8409 31 1 -0.3633 0.4330 -0.9320 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 2.9250 -1.8409 4.7317 35 1 1.6434 -0.2319 -2.1387 36 1 1.7109 -1.7601 -1.2287 37 1 3.6027 1.1236 -0.1900 38 1 3.6548 1.3094 -1.9598 39 1 5.8604 0.1210 -0.2153 40 1 5.8858 1.7264 -0.9839 41 1 7.8702 -0.2002 -3.3051 42 1 7.8467 1.1765 -2.1769 43 1 8.1033 0.8311 0.2101 44 1 8.9964 -0.6143 1.9925 45 1 9.4759 -2.9849 1.5306 46 1 9.0525 -3.9128 -0.7106 47 1 8.1501 -2.4698 -2.4901 48 1 5.9513 -1.6932 -3.3956 49 1 5.8992 -1.8794 -1.6260 50 1 3.8589 -3.2911 -1.7793 51 1 2.4323 -2.7083 -2.6698 52 1 3.9114 -3.1555 -3.5532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602468775.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:33 Heat of formation + Delta-G solvation = 25.681502 kcal Electronic energy + Delta-G solvation = -27929.698373 eV Core-core repulsion = 24507.444043 eV Total energy + Delta-G solvation = -3422.254330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.08133 -38.69363 -36.34188 -34.32558 -32.33212 -31.90938 -30.97250 -30.80234 -28.07699 -26.90453 -26.75051 -24.99877 -23.75734 -22.66844 -22.22823 -21.80096 -20.81686 -19.46827 -18.56362 -16.74905 -16.31652 -15.91566 -15.47606 -15.25034 -15.02638 -14.63266 -14.61848 -14.32763 -14.05032 -13.83072 -13.44193 -13.38919 -12.78932 -12.49666 -12.42113 -12.31529 -12.10252 -11.91320 -11.76019 -11.56459 -11.40768 -11.30022 -11.13268 -10.98498 -10.87423 -10.82847 -10.77438 -10.68926 -10.33419 -10.20386 -9.98599 -9.51853 -9.03607 -8.84210 -8.80185 -8.72439 -8.24915 -8.22641 -7.70123 -5.87377 -3.88130 1.36827 1.44816 3.36363 3.42933 3.45625 3.77283 4.12295 4.28914 4.54228 4.78991 4.80622 5.02772 5.06260 5.12360 5.17216 5.31312 5.39661 5.47887 5.52510 5.56812 5.58935 5.66681 5.67571 5.71911 5.80157 5.85090 5.91158 5.94973 6.02614 6.04450 6.06886 6.15672 6.18810 6.27466 6.32239 6.37249 6.47621 6.48389 6.49562 6.56056 6.59827 6.61843 7.00461 7.03785 7.05990 7.11170 7.14471 7.31937 7.61875 7.67404 7.87321 8.07827 8.21962 8.58175 9.20048 9.74087 11.23374 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.004521 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.002870 B = 6191.267242 C = 7778.959780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.091 4.091 3 H 0.057 0.943 4 C 0.037 3.963 5 C -0.514 4.514 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.065 3.935 14 N -0.520 5.520 15 C 0.057 3.943 16 C 0.053 3.947 17 N -0.529 5.529 18 C 0.093 3.907 19 C -0.120 4.120 20 C -0.105 4.105 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.109 4.109 25 C 0.061 3.939 26 C 0.084 3.916 27 H 0.039 0.961 28 C -0.145 4.145 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.027 0.973 32 H 0.009 0.991 33 H 0.032 0.968 34 H 0.257 0.743 35 H 0.015 0.985 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.030 0.970 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.069 0.931 49 H 0.053 0.947 50 H 0.065 0.935 51 H 0.059 0.941 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.093 0.077 -13.933 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.109 4.109 3 H 0.075 0.925 4 C 0.000 4.000 5 C -0.552 4.552 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.063 4.063 14 N -0.245 5.245 15 C -0.071 4.071 16 C -0.075 4.075 17 N -0.252 5.252 18 C -0.035 4.035 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.128 4.128 25 C -0.068 4.068 26 C -0.025 4.025 27 H 0.057 0.943 28 C -0.203 4.203 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.033 0.967 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.088 0.912 49 H 0.071 0.929 50 H 0.084 0.916 51 H 0.078 0.922 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.152 -0.016 -13.829 17.765 hybrid contribution -0.301 0.382 1.094 1.197 sum 10.851 0.366 -12.735 16.735 Atomic orbital electron populations 1.21678 0.96401 1.01197 0.99577 1.21363 0.94548 0.99174 0.95860 0.92512 1.19036 0.97293 0.94534 0.89102 1.21318 1.34340 1.08163 0.91411 0.93062 1.24978 0.95477 0.95063 0.98797 1.69985 1.39046 1.21236 1.22995 0.86745 0.78167 0.80502 0.83449 1.20888 1.21423 1.20051 1.22261 0.86057 1.00867 0.97081 1.62116 1.09463 1.18435 1.34530 1.22222 0.93674 0.89516 1.01736 1.22258 0.95203 0.99027 0.91034 1.62622 1.06578 1.19114 1.36840 1.21229 0.87504 0.98660 0.96079 1.20624 0.99649 0.95475 0.96469 1.21065 0.98577 0.99898 0.92820 1.21168 0.99004 0.94155 0.99084 1.21147 1.00173 0.95529 0.96855 1.21107 0.99763 0.99545 0.93553 1.21001 0.99195 0.93432 0.99170 1.22236 0.94432 0.89225 1.00865 1.21612 0.93882 0.95593 0.91405 0.94297 1.21838 1.01329 0.95566 1.01582 0.93517 0.92086 0.95356 0.97228 0.95002 0.93331 0.96703 0.91048 0.88526 0.95206 0.92784 0.90934 0.90179 0.90076 0.86264 0.86105 0.86285 0.86332 0.86484 0.91248 0.92911 0.91593 0.92218 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.92 37.16 0.33 -2.16 16 2 C -0.09 -1.86 1.86 -90.62 -0.17 -2.03 16 3 H 0.06 1.18 6.11 -51.93 -0.32 0.86 16 4 C 0.04 0.96 4.31 -27.88 -0.12 0.84 16 5 C -0.51 -14.41 8.47 -34.44 -0.29 -14.71 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.03 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.88 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.06 1.15 3.94 -3.82 -0.02 1.14 16 14 N -0.52 -9.05 3.88 -226.45 -0.88 -9.93 16 15 C 0.06 0.94 5.12 -3.75 -0.02 0.93 16 16 C 0.05 0.79 5.08 -3.77 -0.02 0.77 16 17 N -0.53 -7.02 4.92 -235.91 -1.16 -8.18 16 18 C 0.09 1.04 5.58 -4.97 -0.03 1.01 16 19 C -0.12 -1.47 4.01 -104.62 -0.42 -1.89 16 20 C -0.10 -1.34 8.07 -39.58 -0.32 -1.66 16 21 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 22 C -0.12 -1.46 10.05 -39.58 -0.40 -1.85 16 23 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 24 C -0.11 -1.28 7.95 -39.58 -0.31 -1.60 16 25 C 0.06 0.82 4.06 -3.77 -0.02 0.80 16 26 C 0.08 1.23 2.56 -67.66 -0.17 1.06 16 27 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 28 C -0.15 -1.94 8.86 37.16 0.33 -1.61 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.23 7.11 -51.93 -0.37 0.86 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.03 0.89 7.53 -51.93 -0.39 0.50 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 1.29 6.49 -51.93 -0.34 0.96 16 37 H 0.10 1.82 5.90 -51.93 -0.31 1.51 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 0.94 6.39 -51.93 -0.33 0.60 16 40 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 41 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 42 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 43 H 0.12 1.41 8.05 -52.49 -0.42 0.99 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 46 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 47 H 0.12 1.18 8.02 -52.49 -0.42 0.76 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.05 0.82 6.27 -51.93 -0.33 0.50 16 50 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.06 0.80 6.46 -51.93 -0.34 0.46 16 52 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 392.68 15.07 5.92 5.92 Total: -1.00 -30.64 392.68 -12.33 -42.97 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -9.39 Total: 1.89 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.53 Total: -23.11 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -1.30 Total: -44.52 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.64 -12.33 -42.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602468775.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.651 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds