Wall clock time and date at job start Tue Mar 31 2020 11:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47308 * 2 1 4 4 C 1.53005 * 109.46802 * 119.99939 * 2 1 3 5 5 C 1.50696 * 109.47147 * 295.00063 * 4 2 1 6 6 H 1.08001 * 120.00506 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99817 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00021 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99909 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47153 * 89.99943 * 9 7 5 11 11 H 1.48505 * 109.47271 * 210.00061 * 9 7 5 12 12 H 1.48500 * 109.47310 * 329.99717 * 9 7 5 13 13 C 1.53000 * 109.47182 * 240.00074 * 2 1 3 14 14 N 1.46907 * 109.46929 * 177.69446 * 13 2 1 15 15 C 1.46999 * 110.99229 * 307.85082 * 14 13 2 16 16 C 1.53046 * 109.34085 * 176.82344 * 15 14 13 17 17 N 1.46959 * 109.37851 * 58.38992 * 16 15 14 18 18 C 1.46905 * 110.99748 * 176.79950 * 17 16 15 19 19 C 1.50703 * 109.47051 * 66.05017 * 18 17 16 20 20 C 1.38239 * 119.99731 * 269.72703 * 19 18 17 21 21 C 1.38227 * 119.99827 * 179.74587 * 20 19 18 22 22 C 1.38238 * 120.00145 * 0.52419 * 21 20 19 23 23 C 1.38233 * 119.99717 * 359.74821 * 22 21 20 24 24 C 1.38234 * 120.00028 * 89.99760 * 19 18 17 25 25 C 1.46949 * 110.88630 * 300.66893 * 17 16 15 26 26 C 1.46959 * 110.99579 * 184.04170 * 14 13 2 27 27 H 1.09008 * 109.50408 * 63.21277 * 26 14 13 28 28 C 1.52998 * 109.49304 * 303.15603 * 26 14 13 29 29 H 1.08995 * 109.47169 * 185.08151 * 1 2 3 30 30 H 1.08997 * 109.46929 * 305.08850 * 1 2 3 31 31 H 1.08995 * 109.46813 * 65.08072 * 1 2 3 32 32 H 1.08994 * 109.47114 * 55.00157 * 4 2 1 33 33 H 1.09003 * 109.46709 * 174.99876 * 4 2 1 34 34 H 0.97005 * 119.99854 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47145 * 57.69358 * 13 2 1 36 36 H 1.08996 * 109.46753 * 297.69178 * 13 2 1 37 37 H 1.08999 * 109.51713 * 56.85079 * 15 14 13 38 38 H 1.09001 * 109.48267 * 296.77949 * 15 14 13 39 39 H 1.08997 * 109.48968 * 298.41589 * 16 15 14 40 40 H 1.08994 * 109.49154 * 178.36657 * 16 15 14 41 41 H 1.09004 * 109.47070 * 186.04697 * 18 17 16 42 42 H 1.09004 * 109.47074 * 306.04934 * 18 17 16 43 43 H 1.08002 * 119.99610 * 359.97438 * 20 19 18 44 44 H 1.08002 * 120.00443 * 180.29349 * 21 20 19 45 45 H 1.07993 * 120.00721 * 179.76913 * 22 21 20 46 46 H 1.08004 * 120.00313 * 180.02562 * 23 22 21 47 47 H 1.08000 * 120.00053 * 0.02562 * 24 19 18 48 48 H 1.08993 * 109.49469 * 179.29058 * 25 17 16 49 49 H 1.09002 * 109.48615 * 299.33388 * 25 17 16 50 50 H 1.08999 * 109.46892 * 300.10980 * 28 26 14 51 51 H 1.08995 * 109.47071 * 60.10463 * 28 26 14 52 52 H 1.08991 * 109.47207 * 180.11236 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9931 -0.4018 3.7283 8 7 2.6771 -1.5183 3.8511 9 14 1.4995 0.5633 5.2496 10 1 0.1724 0.0953 5.7237 11 1 2.5092 0.3535 6.3182 12 1 1.4247 2.0085 4.9164 13 6 2.0400 -0.7212 -1.2492 14 7 3.5080 -0.6731 -1.2774 15 6 3.9929 0.7054 -1.1178 16 6 5.5227 0.7026 -1.0730 17 7 6.0456 0.1028 -2.3085 18 6 7.5136 0.1509 -2.3367 19 6 8.0662 -0.7321 -1.2477 20 6 8.3092 -0.2099 0.0090 21 6 8.8110 -1.0211 1.0093 22 6 9.0802 -2.3520 0.7501 23 6 8.8426 -2.8728 -0.5081 24 6 8.3354 -2.0630 -1.5070 25 6 5.5608 -1.2753 -2.4678 26 6 4.0310 -1.2730 -2.5129 27 1 3.6933 -0.6916 -3.3709 28 6 3.5218 -2.7103 -2.6378 29 1 -0.3633 -1.0236 0.0910 30 1 -0.3633 0.5907 0.8409 31 1 -0.3633 0.4330 -0.9320 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 2.9250 -1.8409 4.7317 35 1 1.6434 -0.2319 -2.1387 36 1 1.7109 -1.7601 -1.2287 37 1 3.6027 1.1236 -0.1900 38 1 3.6548 1.3094 -1.9598 39 1 5.8604 0.1210 -0.2153 40 1 5.8858 1.7264 -0.9839 41 1 7.8702 -0.2002 -3.3051 42 1 7.8467 1.1765 -2.1769 43 1 8.1033 0.8311 0.2101 44 1 8.9964 -0.6143 1.9925 45 1 9.4759 -2.9849 1.5306 46 1 9.0525 -3.9128 -0.7106 47 1 8.1501 -2.4698 -2.4901 48 1 5.9513 -1.6932 -3.3956 49 1 5.8992 -1.8794 -1.6260 50 1 3.8589 -3.2911 -1.7793 51 1 2.4323 -2.7083 -2.6698 52 1 3.9114 -3.1555 -3.5532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602468775.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:32 Heat of formation + Delta-G solvation = 8.533527 kcal Electronic energy + Delta-G solvation = -27930.441965 eV Core-core repulsion = 24507.444043 eV Total energy + Delta-G solvation = -3422.997922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15361 -39.82048 -37.68164 -35.83950 -34.22794 -33.18379 -32.09071 -31.78127 -29.47094 -28.72558 -27.84463 -26.31805 -25.28150 -24.16052 -23.44643 -22.89410 -21.83449 -20.77238 -20.12386 -18.46282 -17.69826 -17.13936 -16.65860 -16.46389 -16.26485 -16.15805 -15.73309 -15.61194 -15.46907 -15.20483 -14.73854 -14.31094 -14.24203 -13.94847 -13.74153 -13.52168 -13.46682 -13.27189 -13.14784 -12.82398 -12.79661 -12.76024 -12.64096 -12.48886 -12.24276 -12.20697 -12.10162 -11.93096 -11.79932 -11.76018 -11.44682 -11.23625 -10.91146 -10.78581 -10.46922 -9.79013 -9.68620 -9.34478 -9.01443 -8.10868 -6.19455 0.42434 0.50244 1.39075 1.39795 1.50281 2.44010 2.79858 3.01423 3.09772 3.22031 3.84396 3.88570 3.96313 4.04649 4.09083 4.13966 4.25355 4.26865 4.29657 4.38480 4.47158 4.49043 4.55195 4.56059 4.61445 4.71902 4.75795 4.79934 4.81083 4.86300 4.89002 4.93768 4.98961 5.03422 5.11568 5.14112 5.14552 5.17178 5.30951 5.38915 5.45315 5.50662 5.54516 5.61561 5.63498 5.66848 5.93524 6.01903 6.02946 6.05261 6.12329 6.31329 6.37432 6.41467 6.99298 7.47762 9.00294 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.004521 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.002870 B = 6191.267242 C = 7778.959780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.084 4.084 3 H 0.055 0.945 4 C 0.053 3.947 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.000 4.000 8 N -0.932 5.932 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.075 3.925 14 N -0.545 5.545 15 C 0.061 3.939 16 C 0.062 3.938 17 N -0.524 5.524 18 C 0.095 3.905 19 C -0.127 4.127 20 C -0.121 4.121 21 C -0.138 4.138 22 C -0.133 4.133 23 C -0.131 4.131 24 C -0.114 4.114 25 C 0.066 3.934 26 C 0.083 3.917 27 H 0.047 0.953 28 C -0.140 4.140 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.063 0.937 32 H -0.025 1.025 33 H -0.001 1.001 34 H 0.258 0.742 35 H 0.037 0.963 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.023 0.977 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.132 0.868 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.097 0.903 49 H 0.029 0.971 50 H 0.043 0.957 51 H 0.057 0.943 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.994 0.795 -15.860 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.103 4.103 3 H 0.074 0.926 4 C 0.016 3.984 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.188 1.188 13 C -0.053 4.053 14 N -0.270 5.270 15 C -0.067 4.067 16 C -0.067 4.067 17 N -0.246 5.246 18 C -0.032 4.032 19 C -0.128 4.128 20 C -0.140 4.140 21 C -0.156 4.156 22 C -0.151 4.151 23 C -0.148 4.148 24 C -0.132 4.132 25 C -0.062 4.062 26 C -0.025 4.025 27 H 0.065 0.935 28 C -0.198 4.198 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.082 0.918 32 H -0.007 1.007 33 H 0.018 0.982 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.150 0.850 46 H 0.157 0.843 47 H 0.156 0.844 48 H 0.116 0.884 49 H 0.047 0.953 50 H 0.062 0.938 51 H 0.076 0.924 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.050 0.714 -15.771 19.270 hybrid contribution -0.241 0.123 1.686 1.707 sum 10.809 0.836 -14.085 17.774 Atomic orbital electron populations 1.21605 0.94946 1.00942 1.00818 1.21212 0.95734 0.98603 0.94722 0.92645 1.18780 0.95018 0.93149 0.91441 1.21716 1.33949 1.08361 0.92456 0.92567 1.25870 0.95436 0.96040 1.02327 1.70136 1.40391 1.23043 1.23774 0.85633 0.77913 0.79440 0.79180 1.20035 1.21188 1.18811 1.22071 0.86743 1.00234 0.96240 1.62084 1.09190 1.19036 1.36735 1.22098 0.94764 0.89310 1.00518 1.22108 0.94111 0.99563 0.90893 1.62656 1.07958 1.18793 1.35189 1.21339 0.85922 0.99234 0.96717 1.20789 0.99591 0.96020 0.96437 1.21244 0.99058 1.00232 0.93460 1.21396 0.99786 0.94857 0.99571 1.21429 1.00360 0.95558 0.97799 1.21440 0.99362 1.00705 0.93330 1.21298 0.98579 0.93258 1.00110 1.22219 0.93691 0.89120 1.01210 1.21719 0.94621 0.96000 0.90173 0.93523 1.21807 1.01231 0.94677 1.02077 0.94022 0.93579 0.91801 1.00666 0.98212 0.93328 0.94480 0.91647 0.91518 0.94154 0.95830 0.89419 0.87938 0.89094 0.86077 0.85723 0.84966 0.84264 0.84449 0.88446 0.95253 0.93791 0.92448 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 8.92 71.98 0.64 -4.03 16 2 C -0.08 -3.48 1.86 -10.79 -0.02 -3.50 16 3 H 0.06 2.31 6.11 -2.39 -0.01 2.30 16 4 C 0.05 2.86 4.31 29.85 0.13 2.99 16 5 C -0.53 -30.24 8.47 25.60 0.22 -30.03 16 6 H 0.06 3.11 7.06 -2.91 -0.02 3.09 16 7 C 0.00 0.02 5.46 84.66 0.46 0.48 16 8 N -0.93 -58.52 13.29 21.45 0.28 -58.23 16 9 Si 0.95 45.43 29.54 68.60 2.03 47.45 16 10 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.07 2.62 3.94 86.30 0.34 2.96 16 14 N -0.54 -18.95 3.88 -870.36 -3.38 -22.33 16 15 C 0.06 2.04 5.12 86.30 0.44 2.49 16 16 C 0.06 1.83 5.08 86.31 0.44 2.27 16 17 N -0.52 -12.96 4.92 -900.29 -4.43 -17.38 16 18 C 0.10 1.92 5.58 85.56 0.48 2.40 16 19 C -0.13 -3.00 4.01 -19.86 -0.08 -3.07 16 20 C -0.12 -3.17 8.07 22.27 0.18 -2.99 16 21 C -0.14 -3.68 10.05 22.27 0.22 -3.46 16 22 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 23 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16 24 C -0.11 -2.53 7.95 22.27 0.18 -2.35 16 25 C 0.07 1.66 4.06 86.31 0.35 2.01 16 26 C 0.08 2.31 2.56 44.92 0.11 2.42 16 27 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 28 C -0.14 -3.54 8.86 71.98 0.64 -2.90 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.82 7.11 -2.39 -0.02 1.81 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H -0.03 -1.50 8.14 -2.39 -0.02 -1.52 16 33 H 0.00 -0.03 7.53 -2.39 -0.02 -0.05 16 34 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 35 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 2.37 6.49 -2.39 -0.02 2.35 16 37 H 0.07 2.60 5.90 -2.39 -0.01 2.58 16 38 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.02 0.85 6.39 -2.39 -0.02 0.83 16 40 H 0.09 2.29 8.11 -2.39 -0.02 2.27 16 41 H 0.10 1.65 8.09 -2.39 -0.02 1.63 16 42 H 0.09 1.67 8.04 -2.38 -0.02 1.65 16 43 H 0.12 2.97 8.05 -2.91 -0.02 2.95 16 44 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 45 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 46 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 47 H 0.14 2.41 8.02 -2.91 -0.02 2.38 16 48 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.03 0.89 6.27 -2.39 -0.01 0.88 16 50 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.06 1.46 6.46 -2.39 -0.02 1.44 16 52 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -68.01 392.68 0.54 -67.47 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.85 Total: 23.15 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 5.18 Total: -40.13 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -7.52 Total: -97.94 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -68.01 0.54 -67.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602468775.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.003 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds