Wall clock time and date at job start Tue Mar 31 2020 11:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47171 * 2 1 4 4 C 1.52993 * 109.47056 * 120.00680 * 2 1 3 5 5 C 1.50703 * 109.47282 * 294.99322 * 4 2 1 6 6 H 1.08005 * 119.99380 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00527 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99744 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00154 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47386 * 60.00286 * 9 7 5 11 11 H 1.48504 * 109.47272 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47287 * 299.99991 * 9 7 5 13 13 C 1.52997 * 109.46684 * 240.00276 * 2 1 3 14 14 N 1.46907 * 109.47122 * 65.00078 * 13 2 1 15 15 C 1.46954 * 111.00025 * 66.20118 * 14 13 2 16 16 C 1.53046 * 109.36715 * 183.18704 * 15 14 13 17 17 N 1.46953 * 109.36554 * 301.59781 * 16 15 14 18 18 C 1.46897 * 111.00149 * 183.18560 * 17 16 15 19 19 C 1.50695 * 109.47249 * 46.20035 * 18 17 16 20 20 C 1.38230 * 119.99937 * 269.72862 * 19 18 17 21 21 C 1.38241 * 119.99826 * 179.76396 * 20 19 18 22 22 C 1.38237 * 119.99978 * 0.50872 * 21 20 19 23 23 C 1.38236 * 119.99839 * 359.74113 * 22 21 20 24 24 C 1.38236 * 119.99879 * 89.99679 * 19 18 17 25 25 C 1.46963 * 110.88176 * 59.31731 * 17 16 15 26 26 C 1.46957 * 110.99669 * 189.99596 * 14 13 2 27 27 H 1.09002 * 109.49310 * 296.77988 * 26 14 13 28 28 C 1.53002 * 109.50643 * 56.83872 * 26 14 13 29 29 H 1.08996 * 109.47448 * 59.99210 * 1 2 3 30 30 H 1.08996 * 109.47416 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46677 * 299.99683 * 1 2 3 32 32 H 1.09003 * 109.47648 * 54.99486 * 4 2 1 33 33 H 1.08999 * 109.47207 * 174.99805 * 4 2 1 34 34 H 0.96998 * 120.00442 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47725 * 305.00262 * 13 2 1 36 36 H 1.08998 * 109.47069 * 184.99752 * 13 2 1 37 37 H 1.09010 * 109.48735 * 303.15856 * 15 14 13 38 38 H 1.09006 * 109.49174 * 63.21596 * 15 14 13 39 39 H 1.09002 * 109.48705 * 61.56454 * 16 15 14 40 40 H 1.08999 * 109.48849 * 181.60815 * 16 15 14 41 41 H 1.09004 * 109.47294 * 166.20041 * 18 17 16 42 42 H 1.08998 * 109.47397 * 286.19835 * 18 17 16 43 43 H 1.07998 * 120.00047 * 359.97438 * 20 19 18 44 44 H 1.08004 * 119.99999 * 180.23091 * 21 20 19 45 45 H 1.08001 * 119.99880 * 179.72670 * 22 21 20 46 46 H 1.07998 * 119.99649 * 179.97438 * 23 22 21 47 47 H 1.08004 * 120.00289 * 0.02562 * 24 19 18 48 48 H 1.08994 * 109.49116 * 180.71263 * 25 17 16 49 49 H 1.08998 * 109.48714 * 60.64486 * 25 17 16 50 50 H 1.09002 * 109.46803 * 179.90046 * 28 26 14 51 51 H 1.09002 * 109.47047 * 299.89708 * 28 26 14 52 52 H 1.08997 * 109.47587 * 59.89727 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6415 0.0569 2.4766 6 1 1.0802 0.9741 2.3757 7 6 1.9934 -0.4019 3.7282 8 7 2.6772 -1.5185 3.8509 9 14 1.4987 0.5624 5.2496 10 1 0.0187 0.6679 5.3093 11 1 1.9938 -0.1377 6.4621 12 1 2.0899 1.9231 5.1871 13 6 2.0399 -0.7212 -1.2493 14 7 1.6512 0.0376 -2.4457 15 6 2.3371 1.3365 -2.4914 16 6 1.8466 2.1269 -3.7067 17 7 2.1077 1.3536 -4.9287 18 6 1.7190 2.1123 -6.1250 19 6 2.2416 3.5217 -6.0177 20 6 1.4653 4.5040 -5.4320 21 6 1.9467 5.7958 -5.3292 22 6 3.2002 6.1075 -5.8217 23 6 3.9745 5.1262 -6.4121 24 6 3.4952 3.8333 -6.5101 25 6 1.4219 0.0546 -4.8831 26 6 1.9124 -0.7358 -3.6676 27 1 2.9830 -0.9186 -3.7606 28 6 1.1709 -2.0722 -3.5947 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6053 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2054 34 1 2.9245 -1.8415 4.7315 35 1 1.6053 -1.7197 -1.2953 36 1 3.1262 -0.7994 -1.2057 37 1 2.1183 1.8955 -1.5814 38 1 3.4125 1.1773 -2.5709 39 1 0.7760 2.3096 -3.6137 40 1 2.3748 3.0789 -3.7586 41 1 2.1395 1.6353 -7.0103 42 1 0.6322 2.1329 -6.2050 43 1 0.4841 4.2615 -5.0516 44 1 1.3417 6.5625 -4.8682 45 1 3.5745 7.1177 -5.7454 46 1 4.9536 5.3699 -6.7972 47 1 4.0998 3.0669 -6.9721 48 1 1.6407 -0.5043 -5.7928 49 1 0.3465 0.2137 -4.8034 50 1 1.3636 -2.6446 -4.5021 51 1 1.5205 -2.6349 -2.7291 52 1 0.1005 -1.8892 -3.5010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602469236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:38 Heat of formation + Delta-G solvation = 24.052174 kcal Electronic energy + Delta-G solvation = -26952.106905 eV Core-core repulsion = 23529.781922 eV Total energy + Delta-G solvation = -3422.324983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.11250 -38.97912 -36.43745 -34.44674 -32.51389 -31.93697 -31.33737 -31.09399 -28.30369 -26.80698 -26.64212 -25.30772 -23.83534 -22.87282 -22.47699 -21.99045 -20.74062 -19.51632 -18.78886 -16.95143 -16.49997 -16.01162 -15.70586 -15.53646 -15.21172 -14.75804 -14.53899 -14.34053 -14.23543 -13.94672 -13.65746 -13.54374 -13.16660 -12.83030 -12.52463 -12.39573 -12.17106 -12.15064 -11.93622 -11.72735 -11.50504 -11.31614 -11.22023 -11.14738 -10.96092 -10.82750 -10.82164 -10.66975 -10.37770 -10.21438 -10.15081 -9.51106 -9.10583 -9.07945 -9.00687 -8.91782 -8.37817 -8.29486 -7.92820 -5.94561 -3.95497 1.10747 1.20614 3.36219 3.40458 3.43011 3.47500 3.98904 4.14365 4.48683 4.50884 4.63113 4.79820 4.87147 4.90511 5.08390 5.10008 5.16614 5.28438 5.33116 5.41120 5.43797 5.44585 5.49410 5.52184 5.65399 5.70354 5.78380 5.81045 5.83518 5.89600 5.97308 6.02756 6.10958 6.16360 6.24432 6.25219 6.31116 6.34487 6.40890 6.48800 6.60331 6.75185 6.77647 6.90389 6.96188 7.08092 7.19254 7.25515 7.47600 7.51692 7.73301 7.89878 8.05982 8.50322 9.10709 9.67612 11.17021 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.002872 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.146331 B = 9747.200758 C =11081.504588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.080 4.080 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.057 3.943 14 N -0.531 5.531 15 C 0.056 3.944 16 C 0.057 3.943 17 N -0.534 5.534 18 C 0.094 3.906 19 C -0.081 4.081 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.100 4.100 25 C 0.065 3.935 26 C 0.083 3.917 27 H 0.044 0.956 28 C -0.147 4.147 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.052 0.948 32 H 0.015 0.985 33 H 0.012 0.988 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.074 0.926 49 H 0.042 0.958 50 H 0.055 0.945 51 H 0.064 0.936 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.094 9.090 -24.005 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.070 4.070 14 N -0.256 5.256 15 C -0.072 4.072 16 C -0.071 4.071 17 N -0.259 5.259 18 C -0.033 4.033 19 C -0.082 4.082 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.118 4.118 25 C -0.063 4.063 26 C -0.026 4.026 27 H 0.062 0.938 28 C -0.205 4.205 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.092 0.908 49 H 0.060 0.940 50 H 0.074 0.926 51 H 0.083 0.917 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.023 8.950 -23.878 25.521 hybrid contribution -0.135 0.491 1.002 1.124 sum -1.157 9.440 -22.876 24.774 Atomic orbital electron populations 1.21559 0.95856 1.00388 0.99966 1.21209 0.95841 0.99009 0.93813 0.92733 1.19113 0.95863 0.95516 0.90471 1.21200 1.34540 1.08257 0.91009 0.92681 1.25011 0.95363 0.95096 0.99048 1.69951 1.39073 1.21266 1.23437 0.86704 0.78887 0.80126 0.82553 1.20293 1.21395 1.20322 1.22397 0.97571 0.97644 0.89400 1.62238 1.57912 1.03611 1.01828 1.22178 0.96282 0.91055 0.97732 1.22281 0.99344 0.96695 0.88734 1.62301 1.57919 1.03738 1.01931 1.21061 0.97973 0.90174 0.94122 1.19763 0.94922 0.94829 0.98655 1.21113 0.99865 0.93040 0.99059 1.21136 0.96253 0.96505 0.99996 1.21164 0.94744 0.99376 0.98691 1.21160 0.99790 0.93291 0.99786 1.21029 0.95070 0.96376 0.99373 1.22198 0.96459 0.89710 0.97907 1.21589 0.98093 0.93122 0.89816 0.93770 1.21883 1.01237 0.95616 1.01738 0.94105 0.94294 0.92916 0.96659 0.97007 0.93074 0.90730 0.95472 0.89547 0.94495 0.94224 0.90127 0.90012 0.93987 0.86277 0.86079 0.86231 0.86147 0.85969 0.90757 0.93977 0.92586 0.91670 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.65 2.26 -90.62 -0.21 -1.86 16 3 H 0.05 1.15 6.28 -51.93 -0.33 0.83 16 4 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.05 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.06 1.01 4.11 -3.82 -0.02 0.99 16 14 N -0.53 -8.06 3.98 -226.48 -0.90 -8.96 16 15 C 0.06 0.83 5.41 -3.77 -0.02 0.81 16 16 C 0.06 0.72 4.65 -3.77 -0.02 0.71 16 17 N -0.53 -6.17 4.85 -235.91 -1.14 -7.32 16 18 C 0.09 0.90 5.44 -4.98 -0.03 0.87 16 19 C -0.08 -0.80 4.13 -104.63 -0.43 -1.23 16 20 C -0.11 -1.07 7.87 -39.58 -0.31 -1.38 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 22 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 24 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 25 C 0.07 0.74 4.86 -3.76 -0.02 0.72 16 26 C 0.08 1.08 2.56 -67.65 -0.17 0.91 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 C -0.15 -1.73 8.89 37.16 0.33 -1.40 16 29 H 0.04 0.73 7.75 -51.93 -0.40 0.32 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 1.11 6.95 -51.92 -0.36 0.75 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.07 1.31 5.73 -51.93 -0.30 1.01 16 36 H 0.03 0.51 8.12 -51.93 -0.42 0.08 16 37 H 0.09 1.37 6.25 -51.92 -0.32 1.04 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 1.02 5.86 -51.93 -0.30 0.71 16 41 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 42 H 0.04 0.39 8.02 -51.93 -0.42 -0.03 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 47 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.06 0.84 6.15 -51.93 -0.32 0.52 16 52 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 396.49 15.07 5.97 5.97 Total: -1.00 -30.24 396.49 -12.44 -42.69 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -9.44 Total: -1.52 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.65 Total: -21.25 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -1.31 Total: -42.77 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.24 -12.44 -42.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602469236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.738 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds