Wall clock time and date at job start Tue Mar 31 2020 11:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47171 * 2 1 4 4 C 1.52993 * 109.47056 * 120.00680 * 2 1 3 5 5 C 1.50703 * 109.47282 * 294.99322 * 4 2 1 6 6 H 1.08005 * 119.99380 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00527 * 180.02562 * 5 4 2 8 8 N 1.31507 * 119.99744 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00154 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47386 * 60.00286 * 9 7 5 11 11 H 1.48504 * 109.47272 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47287 * 299.99991 * 9 7 5 13 13 C 1.52997 * 109.46684 * 240.00276 * 2 1 3 14 14 N 1.46907 * 109.47122 * 65.00078 * 13 2 1 15 15 C 1.46954 * 111.00025 * 66.20118 * 14 13 2 16 16 C 1.53046 * 109.36715 * 183.18704 * 15 14 13 17 17 N 1.46953 * 109.36554 * 301.59781 * 16 15 14 18 18 C 1.46897 * 111.00149 * 183.18560 * 17 16 15 19 19 C 1.50695 * 109.47249 * 46.20035 * 18 17 16 20 20 C 1.38230 * 119.99937 * 269.72862 * 19 18 17 21 21 C 1.38241 * 119.99826 * 179.76396 * 20 19 18 22 22 C 1.38237 * 119.99978 * 0.50872 * 21 20 19 23 23 C 1.38236 * 119.99839 * 359.74113 * 22 21 20 24 24 C 1.38236 * 119.99879 * 89.99679 * 19 18 17 25 25 C 1.46963 * 110.88176 * 59.31731 * 17 16 15 26 26 C 1.46957 * 110.99669 * 189.99596 * 14 13 2 27 27 H 1.09002 * 109.49310 * 296.77988 * 26 14 13 28 28 C 1.53002 * 109.50643 * 56.83872 * 26 14 13 29 29 H 1.08996 * 109.47448 * 59.99210 * 1 2 3 30 30 H 1.08996 * 109.47416 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46677 * 299.99683 * 1 2 3 32 32 H 1.09003 * 109.47648 * 54.99486 * 4 2 1 33 33 H 1.08999 * 109.47207 * 174.99805 * 4 2 1 34 34 H 0.96998 * 120.00442 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47725 * 305.00262 * 13 2 1 36 36 H 1.08998 * 109.47069 * 184.99752 * 13 2 1 37 37 H 1.09010 * 109.48735 * 303.15856 * 15 14 13 38 38 H 1.09006 * 109.49174 * 63.21596 * 15 14 13 39 39 H 1.09002 * 109.48705 * 61.56454 * 16 15 14 40 40 H 1.08999 * 109.48849 * 181.60815 * 16 15 14 41 41 H 1.09004 * 109.47294 * 166.20041 * 18 17 16 42 42 H 1.08998 * 109.47397 * 286.19835 * 18 17 16 43 43 H 1.07998 * 120.00047 * 359.97438 * 20 19 18 44 44 H 1.08004 * 119.99999 * 180.23091 * 21 20 19 45 45 H 1.08001 * 119.99880 * 179.72670 * 22 21 20 46 46 H 1.07998 * 119.99649 * 179.97438 * 23 22 21 47 47 H 1.08004 * 120.00289 * 0.02562 * 24 19 18 48 48 H 1.08994 * 109.49116 * 180.71263 * 25 17 16 49 49 H 1.08998 * 109.48714 * 60.64486 * 25 17 16 50 50 H 1.09002 * 109.46803 * 179.90046 * 28 26 14 51 51 H 1.09002 * 109.47047 * 299.89708 * 28 26 14 52 52 H 1.08997 * 109.47587 * 59.89727 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6415 0.0569 2.4766 6 1 1.0802 0.9741 2.3757 7 6 1.9934 -0.4019 3.7282 8 7 2.6772 -1.5185 3.8509 9 14 1.4987 0.5624 5.2496 10 1 0.0187 0.6679 5.3093 11 1 1.9938 -0.1377 6.4621 12 1 2.0899 1.9231 5.1871 13 6 2.0399 -0.7212 -1.2493 14 7 1.6512 0.0376 -2.4457 15 6 2.3371 1.3365 -2.4914 16 6 1.8466 2.1269 -3.7067 17 7 2.1077 1.3536 -4.9287 18 6 1.7190 2.1123 -6.1250 19 6 2.2416 3.5217 -6.0177 20 6 1.4653 4.5040 -5.4320 21 6 1.9467 5.7958 -5.3292 22 6 3.2002 6.1075 -5.8217 23 6 3.9745 5.1262 -6.4121 24 6 3.4952 3.8333 -6.5101 25 6 1.4219 0.0546 -4.8831 26 6 1.9124 -0.7358 -3.6676 27 1 2.9830 -0.9186 -3.7606 28 6 1.1709 -2.0722 -3.5947 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6053 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2054 34 1 2.9245 -1.8415 4.7315 35 1 1.6053 -1.7197 -1.2953 36 1 3.1262 -0.7994 -1.2057 37 1 2.1183 1.8955 -1.5814 38 1 3.4125 1.1773 -2.5709 39 1 0.7760 2.3096 -3.6137 40 1 2.3748 3.0789 -3.7586 41 1 2.1395 1.6353 -7.0103 42 1 0.6322 2.1329 -6.2050 43 1 0.4841 4.2615 -5.0516 44 1 1.3417 6.5625 -4.8682 45 1 3.5745 7.1177 -5.7454 46 1 4.9536 5.3699 -6.7972 47 1 4.0998 3.0669 -6.9721 48 1 1.6407 -0.5043 -5.7928 49 1 0.3465 0.2137 -4.8034 50 1 1.3636 -2.6446 -4.5021 51 1 1.5205 -2.6349 -2.7291 52 1 0.1005 -1.8892 -3.5010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602469236.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:37 Heat of formation + Delta-G solvation = 7.725123 kcal Electronic energy + Delta-G solvation = -26952.814899 eV Core-core repulsion = 23529.781922 eV Total energy + Delta-G solvation = -3423.032977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01777 -39.89614 -37.71608 -35.93431 -34.26745 -33.13980 -32.35499 -31.75266 -29.58770 -28.58888 -27.65443 -26.62094 -25.24296 -24.05520 -23.52106 -22.99800 -21.55150 -20.74284 -20.36618 -18.51504 -17.62171 -17.26750 -16.59177 -16.48120 -16.38628 -16.18413 -15.70352 -15.65066 -15.33270 -15.21938 -14.88012 -14.32428 -14.22757 -14.08304 -13.95423 -13.64375 -13.40083 -13.28373 -12.98102 -12.87153 -12.86373 -12.75157 -12.69297 -12.47730 -12.28648 -12.14467 -12.01685 -11.92389 -11.84761 -11.72842 -11.50559 -11.24967 -10.99954 -10.85028 -10.52413 -9.77336 -9.71839 -9.31211 -9.16113 -8.17056 -6.26287 0.43022 0.53695 1.39698 1.42604 1.50217 2.41980 2.73712 2.92266 3.16143 3.17121 3.74461 3.84459 3.97165 3.98713 4.10231 4.18438 4.24218 4.28869 4.34564 4.35470 4.40199 4.47989 4.51728 4.52876 4.64455 4.71503 4.74268 4.79337 4.81452 4.83001 4.88960 4.89713 4.99970 5.01882 5.08467 5.13892 5.16407 5.19875 5.29421 5.37415 5.47144 5.50167 5.56355 5.58496 5.65860 5.71612 5.80663 5.89100 5.98152 6.01056 6.14002 6.19897 6.26450 6.33302 6.89259 7.41831 8.94944 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.002872 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.146331 B = 9747.200758 C =11081.504588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.070 4.070 3 H 0.049 0.951 4 C 0.035 3.965 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.070 3.930 14 N -0.528 5.528 15 C 0.056 3.944 16 C 0.072 3.928 17 N -0.542 5.542 18 C 0.098 3.902 19 C -0.093 4.093 20 C -0.123 4.123 21 C -0.131 4.131 22 C -0.128 4.128 23 C -0.130 4.130 24 C -0.111 4.111 25 C 0.071 3.929 26 C 0.080 3.920 27 H 0.033 0.967 28 C -0.142 4.142 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.036 0.964 32 H -0.009 1.009 33 H -0.018 1.018 34 H 0.262 0.738 35 H 0.077 0.923 36 H 0.011 0.989 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.038 0.962 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.122 0.878 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.130 0.870 48 H 0.097 0.903 49 H 0.042 0.958 50 H 0.081 0.919 51 H 0.049 0.951 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 10.305 -25.399 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.003 4.003 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.058 4.058 14 N -0.253 5.253 15 C -0.072 4.072 16 C -0.057 4.057 17 N -0.267 5.267 18 C -0.029 4.029 19 C -0.094 4.094 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.130 4.130 25 C -0.057 4.057 26 C -0.028 4.028 27 H 0.051 0.949 28 C -0.200 4.200 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.009 0.991 33 H 0.000 1.000 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.029 0.971 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.056 0.944 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.065 0.935 43 H 0.140 0.860 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.148 0.852 48 H 0.116 0.884 49 H 0.060 0.940 50 H 0.100 0.900 51 H 0.068 0.932 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.894 10.175 -25.298 27.333 hybrid contribution 0.188 0.117 1.385 1.403 sum -1.706 10.292 -23.913 26.090 Atomic orbital electron populations 1.21427 0.94549 1.00368 1.00198 1.21004 0.96730 0.98222 0.92937 0.93226 1.18989 0.93835 0.94727 0.92731 1.21595 1.34456 1.08571 0.92074 0.92201 1.25943 0.95238 0.96095 1.02615 1.70092 1.40230 1.22974 1.24336 0.85573 0.78979 0.78767 0.78188 1.19158 1.20975 1.19302 1.22111 0.96399 0.97723 0.89553 1.62231 1.57614 1.03704 1.01779 1.22162 0.95577 0.91031 0.98459 1.22072 0.98955 0.96292 0.88335 1.62289 1.58312 1.03995 1.02084 1.21082 0.98367 0.89979 0.93444 1.19858 0.95298 0.94996 0.99225 1.21244 1.00129 0.93451 0.99360 1.21396 0.96728 0.96723 1.00020 1.21464 0.94629 1.00353 0.98199 1.21444 1.00618 0.93135 0.99584 1.21225 0.95150 0.97016 0.99572 1.22178 0.96240 0.89553 0.97710 1.21716 0.97814 0.93891 0.89405 0.94870 1.21848 1.00852 0.94901 1.02380 0.91890 0.94405 0.94477 0.99070 0.99989 0.92933 0.90429 0.97061 0.90951 0.95808 0.94379 0.90110 0.88672 0.93467 0.86043 0.84724 0.84411 0.84441 0.85243 0.88439 0.93965 0.90024 0.93196 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 8.89 71.98 0.64 -3.58 16 2 C -0.07 -2.97 2.26 -10.80 -0.02 -2.99 16 3 H 0.05 2.15 6.28 -2.39 -0.01 2.13 16 4 C 0.03 1.87 4.45 29.85 0.13 2.00 16 5 C -0.53 -30.45 8.41 25.60 0.22 -30.24 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 8 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 9 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 C 0.07 2.52 4.11 86.30 0.36 2.88 16 14 N -0.53 -15.83 3.98 -870.45 -3.46 -19.30 16 15 C 0.06 1.66 5.41 86.31 0.47 2.13 16 16 C 0.07 1.74 4.65 86.31 0.40 2.14 16 17 N -0.54 -11.57 4.85 -900.30 -4.37 -15.94 16 18 C 0.10 1.67 5.44 85.56 0.47 2.14 16 19 C -0.09 -1.69 4.13 -19.87 -0.08 -1.78 16 20 C -0.12 -2.20 7.87 22.27 0.18 -2.03 16 21 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 22 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 23 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 24 C -0.11 -1.92 9.70 22.27 0.22 -1.71 16 25 C 0.07 1.44 4.86 86.31 0.42 1.86 16 26 C 0.08 1.99 2.56 44.92 0.12 2.11 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 C -0.14 -3.11 8.89 71.98 0.64 -2.47 16 29 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.54 6.95 -2.38 -0.02 1.52 16 32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.08 2.76 5.73 -2.39 -0.01 2.75 16 36 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 37 H 0.07 2.32 6.25 -2.38 -0.01 2.31 16 38 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.97 5.86 -2.39 -0.01 1.96 16 41 H 0.10 1.37 8.09 -2.38 -0.02 1.36 16 42 H 0.05 0.77 8.02 -2.39 -0.02 0.75 16 43 H 0.12 2.03 8.06 -2.91 -0.02 2.00 16 44 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 45 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 46 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 47 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 48 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.05 1.24 6.15 -2.39 -0.01 1.23 16 52 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -65.59 396.49 0.60 -64.99 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.85 Total: 15.59 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 5.27 Total: -34.70 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -7.55 Total: -92.95 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.59 0.60 -64.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602469236.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.713 kcal (2) G-P(sol) polarization free energy of solvation -65.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds