Wall clock time and date at job start Tue Mar 31 2020 10:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38313 * 119.96660 * 2 1 4 4 C 1.38267 * 120.15098 * 180.27216 * 3 2 1 5 5 C 1.38121 * 120.07140 * 359.44677 * 4 3 2 6 6 C 1.38886 * 119.93058 * 0.28019 * 5 4 3 7 7 N 1.39678 * 120.07796 * 179.97438 * 6 5 4 8 8 C 1.46495 * 119.99670 * 359.97438 * 7 6 5 9 9 C 1.53117 * 109.52593 * 274.68559 * 8 7 6 10 10 C 1.53038 * 109.27796 * 182.44330 * 9 8 7 11 11 N 1.46838 * 109.52438 * 59.18155 * 10 9 8 12 12 C 1.46901 * 111.00029 * 174.15900 * 11 10 9 13 13 C 1.53009 * 109.47061 * 200.02192 * 12 11 10 14 14 H 1.09000 * 109.46933 * 303.71525 * 13 12 11 15 15 C 1.52995 * 109.47080 * 63.71503 * 13 12 11 16 16 C 1.53001 * 109.46880 * 183.71564 * 13 12 11 17 17 C 1.50702 * 109.46741 * 174.99799 * 16 13 12 18 18 H 1.07991 * 120.00140 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99558 * 179.97438 * 17 16 13 20 20 N 1.31511 * 120.00461 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99725 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46745 * 60.00784 * 21 19 17 23 23 H 1.48506 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47547 * 300.00686 * 21 19 17 25 25 C 1.46847 * 111.20006 * 298.25421 * 11 10 9 26 26 C 1.53043 * 109.52167 * 61.74153 * 25 11 10 27 27 C 1.38089 * 119.96179 * 179.71756 * 2 1 3 28 28 H 1.08996 * 109.47579 * 270.27772 * 1 2 3 29 29 H 1.09003 * 109.46660 * 30.27920 * 1 2 3 30 30 H 1.08996 * 109.46909 * 150.27442 * 1 2 3 31 31 H 1.07995 * 119.92059 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.96126 * 179.72594 * 4 3 2 33 33 H 1.08003 * 120.03544 * 180.25206 * 5 4 3 34 34 H 0.96993 * 119.99716 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.52685 * 34.88013 * 8 7 6 36 36 H 1.09003 * 109.50389 * 302.38284 * 9 8 7 37 37 H 1.09001 * 109.50231 * 62.50135 * 9 8 7 38 38 H 1.08993 * 109.46317 * 299.16109 * 10 9 8 39 39 H 1.09002 * 109.44869 * 179.19165 * 10 9 8 40 40 H 1.08996 * 109.47454 * 320.02089 * 12 11 10 41 41 H 1.08997 * 109.46968 * 80.02555 * 12 11 10 42 42 H 1.09009 * 109.47057 * 65.41199 * 15 13 12 43 43 H 1.09004 * 109.47242 * 185.40617 * 15 13 12 44 44 H 1.08997 * 109.47497 * 305.41197 * 15 13 12 45 45 H 1.08997 * 109.47308 * 294.99984 * 16 13 12 46 46 H 1.09001 * 109.47091 * 54.99811 * 16 13 12 47 47 H 0.96996 * 120.00380 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.46443 * 301.73138 * 25 11 10 49 49 H 1.08999 * 109.45658 * 181.74823 * 25 11 10 50 50 H 1.08998 * 109.50454 * 180.87701 * 26 25 11 51 51 H 1.09003 * 109.50114 * 60.76121 * 26 25 11 52 52 H 1.07993 * 120.03403 * 0.03034 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 -0.0057 5 6 4.2764 0.0096 0.0002 6 6 3.5859 -1.1954 0.0059 7 7 4.2866 -2.4037 0.0113 8 6 5.7516 -2.4008 0.0103 9 6 6.2622 -2.2888 -1.4289 10 6 7.7915 -2.3477 -1.4284 11 7 8.2337 -3.6137 -0.8303 12 6 9.6907 -3.7665 -0.9384 13 6 10.0618 -5.2426 -0.7822 14 1 9.6727 -5.6168 0.1647 15 6 9.4563 -6.0455 -1.9353 16 6 11.5845 -5.3905 -0.8020 17 6 11.9534 -6.8253 -0.5257 18 1 11.1793 -7.5584 -0.3536 19 6 13.2793 -7.2023 -0.4936 20 7 14.2220 -6.3097 -0.7037 21 14 13.7366 -8.9806 -0.1504 22 1 13.1402 -9.8549 -1.1922 23 1 15.2146 -9.1242 -0.1698 24 1 13.2187 -9.3763 1.1839 25 6 7.7954 -3.7226 0.5670 26 6 6.2662 -3.7048 0.6262 27 6 2.1966 -1.1963 0.0059 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6560 2.1324 0.0004 32 1 4.1168 2.1401 -0.0101 33 1 5.3564 0.0138 -0.0002 34 1 3.8032 -3.2446 0.0156 35 1 6.1146 -1.5545 0.5935 36 1 5.8665 -3.1142 -2.0207 37 1 5.9346 -1.3422 -1.8586 38 1 8.1868 -1.5142 -0.8480 39 1 8.1575 -2.2826 -2.4531 40 1 10.0221 -3.4098 -1.9136 41 1 10.1761 -3.1849 -0.1546 42 1 9.9165 -5.7367 -2.8740 43 1 9.6387 -7.1079 -1.7735 44 1 8.3825 -5.8638 -1.9801 45 1 11.9651 -5.0996 -1.7811 46 1 12.0218 -4.7491 -0.0369 47 1 15.1547 -6.5748 -0.6808 48 1 8.1907 -2.8826 1.1381 49 1 8.1643 -4.6563 0.9915 50 1 5.9414 -3.7700 1.6646 51 1 5.8705 -4.5525 0.0666 52 1 1.6565 -2.1315 0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602471208.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:07 Heat of formation + Delta-G solvation = 3.108840 kcal Electronic energy + Delta-G solvation = -26068.356096 eV Core-core repulsion = 22645.122942 eV Total energy + Delta-G solvation = -3423.233154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.03839 -38.91751 -36.47579 -34.69188 -32.73454 -32.35005 -31.37016 -30.85345 -28.76266 -27.07888 -26.81233 -25.58431 -23.60163 -23.28777 -22.47903 -22.07051 -20.67341 -19.84525 -18.82832 -17.25562 -16.63928 -16.36796 -15.94730 -15.30248 -14.96354 -14.62547 -14.50212 -14.30779 -14.24339 -13.94359 -13.78657 -13.59561 -13.35253 -12.86992 -12.72762 -12.53805 -12.43817 -12.28127 -12.16704 -11.74322 -11.48523 -11.35760 -11.28745 -11.20605 -11.03546 -10.88892 -10.83420 -10.76721 -10.55946 -10.28492 -10.24157 -10.01517 -9.58982 -9.10059 -8.96182 -8.88420 -8.31547 -8.02972 -7.55134 -5.96539 -3.97574 1.25565 1.47499 3.20700 3.34732 3.39127 3.41581 3.70679 4.08881 4.49007 4.55714 4.67009 4.72123 4.75164 4.95481 4.99397 5.13595 5.15686 5.24807 5.30162 5.32056 5.32972 5.39139 5.46589 5.50756 5.56838 5.60723 5.63678 5.71148 5.82171 5.87890 5.89645 5.98826 6.00565 6.05554 6.17332 6.18691 6.22716 6.38288 6.40292 6.51554 6.55992 6.71838 6.73036 7.03218 7.16561 7.21024 7.21717 7.38399 7.43184 7.56828 7.70486 7.87084 8.03760 8.48107 9.08661 9.65647 11.14915 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.039237 B = 0.001978 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.433388 B =14152.687624 C =14458.217478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.186 4.186 4 C -0.069 4.069 5 C -0.205 4.205 6 C 0.226 3.774 7 N -0.741 5.741 8 C 0.152 3.848 9 C -0.128 4.128 10 C 0.057 3.943 11 N -0.534 5.534 12 C 0.061 3.939 13 C -0.078 4.078 14 H 0.054 0.946 15 C -0.121 4.121 16 C 0.027 3.973 17 C -0.512 4.512 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.058 3.942 26 C -0.121 4.121 27 C -0.201 4.201 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.398 0.602 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.029 0.971 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.031 0.969 42 H 0.038 0.962 43 H 0.050 0.950 44 H 0.044 0.956 45 H 0.015 0.985 46 H 0.012 0.988 47 H 0.260 0.740 48 H 0.031 0.969 49 H 0.086 0.914 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.953 13.759 1.394 28.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.042 4.042 3 C -0.206 4.206 4 C -0.088 4.088 5 C -0.228 4.228 6 C 0.122 3.878 7 N -0.369 5.369 8 C 0.046 3.954 9 C -0.167 4.167 10 C -0.072 4.072 11 N -0.259 5.259 12 C -0.066 4.066 13 C -0.097 4.097 14 H 0.072 0.928 15 C -0.179 4.179 16 C -0.011 4.011 17 C -0.550 4.550 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.070 4.070 26 C -0.159 4.159 27 C -0.223 4.223 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.233 0.767 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.069 0.931 48 H 0.049 0.951 49 H 0.104 0.896 50 H 0.087 0.913 51 H 0.094 0.906 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.766 13.418 1.125 28.190 hybrid contribution 0.717 -0.611 0.615 1.125 sum -24.049 12.807 1.739 27.302 Atomic orbital electron populations 1.20796 0.91551 1.02595 1.02200 1.19613 0.95501 0.92675 0.96427 1.20740 0.94133 0.97133 1.08579 1.20871 0.94091 0.97260 0.96530 1.20683 0.99671 0.91247 1.11159 1.17822 0.90904 0.86496 0.92599 1.44837 1.05217 1.05118 1.81694 1.21008 0.79364 0.98727 0.96268 1.22060 0.95306 1.02387 0.96964 1.22048 0.94581 0.90583 0.99976 1.61965 1.14354 1.32973 1.16599 1.22315 0.84718 0.99070 1.00539 1.21176 0.99015 0.91346 0.98130 0.92772 1.21564 0.98737 0.99940 0.97637 1.19135 0.88166 0.96775 0.97005 1.21193 0.91589 0.94530 1.47711 0.92665 1.25021 0.96757 0.97175 0.95617 1.69950 0.99948 1.33510 1.50282 0.86696 0.77169 0.85537 0.78808 1.20293 1.21393 1.20343 1.22036 0.93718 1.01791 0.89469 1.21839 0.96187 0.97106 1.00787 1.20423 0.91931 0.97961 1.12033 0.91231 0.91603 0.91697 0.86767 0.86403 0.86222 0.76731 0.90755 0.90798 0.91613 0.95318 0.90585 0.91418 0.95103 0.94270 0.93140 0.93743 0.96637 0.97007 0.93072 0.95106 0.89613 0.91266 0.90557 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.04 -0.37 5.88 -104.65 -0.62 -0.99 16 3 C -0.19 -1.67 9.70 -39.54 -0.38 -2.06 16 4 C -0.07 -0.64 10.04 -39.61 -0.40 -1.04 16 5 C -0.21 -2.08 8.90 -39.38 -0.35 -2.43 16 6 C 0.23 2.28 6.64 -83.79 -0.56 1.72 16 7 N -0.74 -6.79 5.25 -52.05 -0.27 -7.07 16 8 C 0.15 1.48 2.21 -67.81 -0.15 1.33 16 9 C -0.13 -1.34 5.64 -26.65 -0.15 -1.49 16 10 C 0.06 0.68 5.43 -3.84 -0.02 0.66 16 11 N -0.53 -7.50 3.89 -234.67 -0.91 -8.41 16 12 C 0.06 1.03 4.41 -3.82 -0.02 1.01 16 13 C -0.08 -1.57 2.39 -90.62 -0.22 -1.79 16 14 H 0.05 1.11 6.73 -51.93 -0.35 0.76 16 15 C -0.12 -2.34 8.86 37.16 0.33 -2.02 16 16 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 17 C -0.51 -14.31 8.48 -34.44 -0.29 -14.61 16 18 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 19 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 21 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.06 0.74 5.29 -3.83 -0.02 0.72 16 26 C -0.12 -1.24 5.57 -26.65 -0.15 -1.38 16 27 C -0.20 -1.90 9.55 -39.38 -0.38 -2.27 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.12 1.17 6.12 -52.48 -0.32 0.85 16 34 H 0.40 3.19 8.62 -40.82 -0.35 2.84 16 35 H 0.07 0.76 6.48 -51.93 -0.34 0.43 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.92 7.93 -51.93 -0.41 0.50 16 40 H 0.07 1.15 7.79 -51.93 -0.40 0.75 16 41 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 42 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.05 1.03 7.12 -51.93 -0.37 0.67 16 44 H 0.04 0.77 7.56 -51.93 -0.39 0.38 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 1.20 6.66 -51.93 -0.35 0.85 16 50 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 52 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 401.92 15.07 6.06 6.06 Total: -1.00 -29.87 401.92 -12.16 -42.03 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -9.52 Total: -0.12 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -3.23 Total: -22.96 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: -0.45 Total: -41.72 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.87 -12.16 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602471208.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.142 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds