Wall clock time and date at job start Tue Mar 31 2020 10:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38313 * 119.96660 * 2 1 4 4 C 1.38267 * 120.15098 * 180.27216 * 3 2 1 5 5 C 1.38121 * 120.07140 * 359.44677 * 4 3 2 6 6 C 1.38886 * 119.93058 * 0.28019 * 5 4 3 7 7 N 1.39678 * 120.07796 * 179.97438 * 6 5 4 8 8 C 1.46495 * 119.99670 * 359.97438 * 7 6 5 9 9 C 1.53117 * 109.52593 * 274.68559 * 8 7 6 10 10 C 1.53038 * 109.27796 * 182.44330 * 9 8 7 11 11 N 1.46838 * 109.52438 * 59.18155 * 10 9 8 12 12 C 1.46901 * 111.00029 * 174.15900 * 11 10 9 13 13 C 1.53009 * 109.47061 * 200.02192 * 12 11 10 14 14 H 1.09000 * 109.46933 * 303.71525 * 13 12 11 15 15 C 1.52995 * 109.47080 * 63.71503 * 13 12 11 16 16 C 1.53001 * 109.46880 * 183.71564 * 13 12 11 17 17 C 1.50702 * 109.46741 * 174.99799 * 16 13 12 18 18 H 1.07991 * 120.00140 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99558 * 179.97438 * 17 16 13 20 20 N 1.31511 * 120.00461 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99725 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46745 * 60.00784 * 21 19 17 23 23 H 1.48506 * 109.47134 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47547 * 300.00686 * 21 19 17 25 25 C 1.46847 * 111.20006 * 298.25421 * 11 10 9 26 26 C 1.53043 * 109.52167 * 61.74153 * 25 11 10 27 27 C 1.38089 * 119.96179 * 179.71756 * 2 1 3 28 28 H 1.08996 * 109.47579 * 270.27772 * 1 2 3 29 29 H 1.09003 * 109.46660 * 30.27920 * 1 2 3 30 30 H 1.08996 * 109.46909 * 150.27442 * 1 2 3 31 31 H 1.07995 * 119.92059 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.96126 * 179.72594 * 4 3 2 33 33 H 1.08003 * 120.03544 * 180.25206 * 5 4 3 34 34 H 0.96993 * 119.99716 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.52685 * 34.88013 * 8 7 6 36 36 H 1.09003 * 109.50389 * 302.38284 * 9 8 7 37 37 H 1.09001 * 109.50231 * 62.50135 * 9 8 7 38 38 H 1.08993 * 109.46317 * 299.16109 * 10 9 8 39 39 H 1.09002 * 109.44869 * 179.19165 * 10 9 8 40 40 H 1.08996 * 109.47454 * 320.02089 * 12 11 10 41 41 H 1.08997 * 109.46968 * 80.02555 * 12 11 10 42 42 H 1.09009 * 109.47057 * 65.41199 * 15 13 12 43 43 H 1.09004 * 109.47242 * 185.40617 * 15 13 12 44 44 H 1.08997 * 109.47497 * 305.41197 * 15 13 12 45 45 H 1.08997 * 109.47308 * 294.99984 * 16 13 12 46 46 H 1.09001 * 109.47091 * 54.99811 * 16 13 12 47 47 H 0.96996 * 120.00380 * 179.97438 * 20 19 17 48 48 H 1.09001 * 109.46443 * 301.73138 * 25 11 10 49 49 H 1.08999 * 109.45658 * 181.74823 * 25 11 10 50 50 H 1.08998 * 109.50454 * 180.87701 * 26 25 11 51 51 H 1.09003 * 109.50114 * 60.76121 * 26 25 11 52 52 H 1.07993 * 120.03403 * 0.03034 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 -0.0057 5 6 4.2764 0.0096 0.0002 6 6 3.5859 -1.1954 0.0059 7 7 4.2866 -2.4037 0.0113 8 6 5.7516 -2.4008 0.0103 9 6 6.2622 -2.2888 -1.4289 10 6 7.7915 -2.3477 -1.4284 11 7 8.2337 -3.6137 -0.8303 12 6 9.6907 -3.7665 -0.9384 13 6 10.0618 -5.2426 -0.7822 14 1 9.6727 -5.6168 0.1647 15 6 9.4563 -6.0455 -1.9353 16 6 11.5845 -5.3905 -0.8020 17 6 11.9534 -6.8253 -0.5257 18 1 11.1793 -7.5584 -0.3536 19 6 13.2793 -7.2023 -0.4936 20 7 14.2220 -6.3097 -0.7037 21 14 13.7366 -8.9806 -0.1504 22 1 13.1402 -9.8549 -1.1922 23 1 15.2146 -9.1242 -0.1698 24 1 13.2187 -9.3763 1.1839 25 6 7.7954 -3.7226 0.5670 26 6 6.2662 -3.7048 0.6262 27 6 2.1966 -1.1963 0.0059 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8875 -0.5182 30 1 -0.3633 -0.8924 -0.5096 31 1 1.6560 2.1324 0.0004 32 1 4.1168 2.1401 -0.0101 33 1 5.3564 0.0138 -0.0002 34 1 3.8032 -3.2446 0.0156 35 1 6.1146 -1.5545 0.5935 36 1 5.8665 -3.1142 -2.0207 37 1 5.9346 -1.3422 -1.8586 38 1 8.1868 -1.5142 -0.8480 39 1 8.1575 -2.2826 -2.4531 40 1 10.0221 -3.4098 -1.9136 41 1 10.1761 -3.1849 -0.1546 42 1 9.9165 -5.7367 -2.8740 43 1 9.6387 -7.1079 -1.7735 44 1 8.3825 -5.8638 -1.9801 45 1 11.9651 -5.0996 -1.7811 46 1 12.0218 -4.7491 -0.0369 47 1 15.1547 -6.5748 -0.6808 48 1 8.1907 -2.8826 1.1381 49 1 8.1643 -4.6563 0.9915 50 1 5.9414 -3.7700 1.6646 51 1 5.8705 -4.5525 0.0666 52 1 1.6565 -2.1315 0.0100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602471208.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:06 Heat of formation + Delta-G solvation = -11.567674 kcal Electronic energy + Delta-G solvation = -26068.992518 eV Core-core repulsion = 22645.122942 eV Total energy + Delta-G solvation = -3423.869575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83856 -39.84479 -37.64244 -36.06106 -34.34870 -33.21392 -32.52663 -31.82407 -29.67849 -28.70999 -27.67223 -26.94526 -25.12077 -24.24750 -23.46862 -23.16951 -21.46882 -20.71133 -20.47891 -18.50865 -17.97389 -17.37283 -16.87649 -16.53489 -16.17186 -16.07670 -15.63193 -15.34871 -15.12129 -14.87529 -14.72700 -14.53206 -14.27462 -14.22562 -14.01077 -13.68719 -13.38244 -13.26013 -13.20338 -12.93993 -12.87441 -12.75302 -12.56499 -12.47000 -12.22774 -12.16525 -12.11363 -11.94640 -11.80798 -11.68340 -11.59885 -11.28147 -11.04960 -10.84663 -10.75903 -10.51744 -9.55530 -9.20619 -8.26404 -8.16466 -6.25452 0.57169 0.77940 1.40183 1.42820 1.50464 2.42280 2.46943 2.96064 3.01714 3.16739 3.72881 3.85442 3.98798 4.09749 4.10291 4.12949 4.27567 4.32653 4.37286 4.43105 4.49948 4.54427 4.57000 4.60172 4.63985 4.69213 4.79938 4.82646 4.88172 4.90779 4.94755 4.98818 5.01265 5.02292 5.09505 5.15410 5.17378 5.30117 5.30997 5.35297 5.49210 5.50081 5.51907 5.57670 5.70611 5.82668 5.85170 5.90448 6.04750 6.12042 6.25752 6.33579 6.49417 6.89860 6.90414 7.42589 8.95208 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.039237 B = 0.001978 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.433388 B =14152.687624 C =14458.217478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.050 4.050 3 C -0.196 4.196 4 C -0.077 4.077 5 C -0.222 4.222 6 C 0.214 3.786 7 N -0.737 5.737 8 C 0.160 3.840 9 C -0.117 4.117 10 C 0.057 3.943 11 N -0.535 5.535 12 C 0.072 3.928 13 C -0.068 4.068 14 H 0.052 0.948 15 C -0.110 4.110 16 C 0.032 3.968 17 C -0.528 4.528 18 H 0.060 0.940 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.960 3.040 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.268 1.268 25 C 0.056 3.944 26 C -0.110 4.110 27 C -0.211 4.211 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.404 0.596 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.022 0.978 42 H 0.032 0.968 43 H 0.035 0.965 44 H 0.067 0.933 45 H -0.010 1.010 46 H -0.015 1.015 47 H 0.261 0.739 48 H 0.031 0.969 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.077 0.923 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.167 13.517 1.634 30.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.051 4.051 3 C -0.215 4.215 4 C -0.096 4.096 5 C -0.244 4.244 6 C 0.110 3.890 7 N -0.365 5.365 8 C 0.054 3.946 9 C -0.156 4.156 10 C -0.071 4.071 11 N -0.260 5.260 12 C -0.055 4.055 13 C -0.087 4.087 14 H 0.070 0.930 15 C -0.168 4.168 16 C -0.005 4.005 17 C -0.566 4.566 18 H 0.078 0.922 19 C -0.200 4.200 20 N -0.576 5.576 21 Si 0.785 3.215 22 H -0.193 1.193 23 H -0.211 1.211 24 H -0.193 1.193 25 C -0.072 4.072 26 C -0.148 4.148 27 C -0.234 4.234 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.240 0.760 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.041 0.959 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.008 0.992 46 H 0.003 0.997 47 H 0.070 0.930 48 H 0.050 0.950 49 H 0.090 0.910 50 H 0.100 0.900 51 H 0.095 0.905 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -27.014 13.178 1.366 30.088 hybrid contribution 1.378 -0.457 0.543 1.550 sum -25.637 12.720 1.909 28.682 Atomic orbital electron populations 1.20834 0.89819 1.03404 1.02930 1.19974 0.96941 0.92505 0.95632 1.21026 0.94243 0.97979 1.08298 1.21127 0.94550 0.97704 0.96211 1.20810 0.99815 0.91759 1.12056 1.17974 0.91351 0.86652 0.93014 1.44719 1.04774 1.05275 1.81781 1.20849 0.79854 0.98285 0.95630 1.21953 0.93855 1.02394 0.97426 1.22093 0.95709 0.89553 0.99780 1.61905 1.11979 1.34455 1.17664 1.22018 0.86905 0.96464 1.00162 1.20971 0.95222 0.93975 0.98548 0.92972 1.21451 1.00017 0.98618 0.96695 1.19029 0.91805 0.95286 0.94428 1.21601 0.91994 0.95683 1.47330 0.92189 1.25948 0.96794 1.01880 0.95386 1.70090 1.00305 1.35804 1.51361 0.85576 0.76890 0.79903 0.79133 1.19293 1.21060 1.19269 1.22071 0.95500 1.01101 0.88528 1.21732 0.94078 0.97353 1.01667 1.20644 0.91860 0.98776 1.12100 0.90441 0.90672 0.91060 0.85238 0.84987 0.86322 0.76012 0.91035 0.91319 0.91115 0.94945 0.90613 0.91598 0.95930 0.94877 0.94618 0.91362 0.99209 0.99689 0.92995 0.95028 0.90981 0.90037 0.90477 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 71.23 0.71 -0.49 16 2 C -0.05 -0.81 5.88 -19.88 -0.12 -0.92 16 3 C -0.20 -3.21 9.70 22.29 0.22 -3.00 16 4 C -0.08 -1.34 10.04 22.25 0.22 -1.12 16 5 C -0.22 -4.26 8.90 22.40 0.20 -4.06 16 6 C 0.21 4.02 6.64 38.21 0.25 4.28 16 7 N -0.74 -12.30 5.25 -318.58 -1.67 -13.97 16 8 C 0.16 2.86 2.21 45.07 0.10 2.96 16 9 C -0.12 -2.26 5.64 30.65 0.17 -2.09 16 10 C 0.06 1.30 5.43 86.33 0.47 1.77 16 11 N -0.54 -14.55 3.89 -896.37 -3.49 -18.04 16 12 C 0.07 2.46 4.41 86.31 0.38 2.84 16 13 C -0.07 -2.78 2.39 -10.79 -0.03 -2.81 16 14 H 0.05 2.15 6.73 -2.39 -0.02 2.13 16 15 C -0.11 -4.22 8.86 71.98 0.64 -3.58 16 16 C 0.03 1.69 4.45 29.85 0.13 1.82 16 17 C -0.53 -29.97 8.48 25.60 0.22 -29.76 16 18 H 0.06 3.28 7.06 -2.92 -0.02 3.26 16 19 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 20 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 21 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 C 0.06 1.38 5.29 86.33 0.46 1.84 16 26 C -0.11 -2.06 5.57 30.65 0.17 -1.89 16 27 C -0.21 -3.67 9.55 22.40 0.21 -3.45 16 28 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 30 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 31 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.13 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.12 2.21 6.12 -2.91 -0.02 2.19 16 34 H 0.40 5.72 8.62 -92.71 -0.80 4.92 16 35 H 0.07 1.36 6.48 -2.39 -0.02 1.35 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.33 7.75 -2.39 -0.02 1.31 16 38 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 1.74 7.93 -2.39 -0.02 1.72 16 40 H 0.07 2.25 7.79 -2.39 -0.02 2.24 16 41 H 0.02 0.80 8.00 -2.39 -0.02 0.78 16 42 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 43 H 0.03 1.44 7.12 -2.38 -0.02 1.42 16 44 H 0.07 2.27 7.56 -2.39 -0.02 2.25 16 45 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 46 H -0.02 -0.88 8.14 -2.39 -0.02 -0.89 16 47 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 48 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.07 1.97 6.66 -2.39 -0.02 1.95 16 50 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -64.28 401.92 2.10 -62.19 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.07 Total: 17.61 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 4.87 Total: -37.38 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -4.88 Total: -89.11 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -64.28 2.10 -62.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602471208.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.619 kcal (2) G-P(sol) polarization free energy of solvation -64.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds