Wall clock time and date at job start Tue Mar 31 2020 10:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38311 * 119.96225 * 2 1 4 4 C 1.38267 * 120.15013 * 180.28001 * 3 2 1 5 5 C 1.38119 * 120.07397 * 359.44085 * 4 3 2 6 6 C 1.38895 * 119.92473 * 0.28428 * 5 4 3 7 7 N 1.39671 * 120.07334 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00334 * 359.97438 * 7 6 5 9 9 C 1.53122 * 109.52073 * 274.68147 * 8 7 6 10 10 C 1.53040 * 109.27603 * 182.43558 * 9 8 7 11 11 N 1.46851 * 109.51865 * 59.18179 * 10 9 8 12 12 C 1.46905 * 110.99389 * 174.15848 * 11 10 9 13 13 C 1.52998 * 109.47110 * 307.98988 * 12 11 10 14 14 H 1.09000 * 109.47368 * 58.05126 * 13 12 11 15 15 C 1.53005 * 109.47072 * 298.05384 * 13 12 11 16 16 C 1.53003 * 109.46953 * 178.05688 * 13 12 11 17 17 C 1.50700 * 109.46920 * 184.99853 * 16 13 12 18 18 H 1.07996 * 120.00307 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00114 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99606 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00070 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47270 * 90.00410 * 21 19 17 23 23 H 1.48505 * 109.46926 * 209.99740 * 21 19 17 24 24 H 1.48493 * 109.47483 * 329.99870 * 21 19 17 25 25 C 1.46841 * 111.19761 * 298.25243 * 11 10 9 26 26 C 1.53036 * 109.52332 * 61.75044 * 25 11 10 27 27 C 1.38080 * 119.96684 * 179.72365 * 2 1 3 28 28 H 1.09005 * 109.46934 * 270.27475 * 1 2 3 29 29 H 1.08992 * 109.47482 * 30.27622 * 1 2 3 30 30 H 1.09007 * 109.47231 * 150.27790 * 1 2 3 31 31 H 1.08002 * 119.92624 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.95894 * 179.72317 * 4 3 2 33 33 H 1.08000 * 120.04120 * 180.25072 * 5 4 3 34 34 H 0.97003 * 120.00311 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.52061 * 34.86904 * 8 7 6 36 36 H 1.08994 * 109.50268 * 302.38146 * 9 8 7 37 37 H 1.09007 * 109.50009 * 62.49698 * 9 8 7 38 38 H 1.08995 * 109.46294 * 299.16347 * 10 9 8 39 39 H 1.09000 * 109.45050 * 179.18903 * 10 9 8 40 40 H 1.08990 * 109.47343 * 67.99107 * 12 11 10 41 41 H 1.08998 * 109.46742 * 187.99381 * 12 11 10 42 42 H 1.09001 * 109.46840 * 60.00500 * 15 13 12 43 43 H 1.09001 * 109.46732 * 180.02562 * 15 13 12 44 44 H 1.08997 * 109.47202 * 299.99739 * 15 13 12 45 45 H 1.08998 * 109.46728 * 304.99883 * 16 13 12 46 46 H 1.08996 * 109.47054 * 64.99951 * 16 13 12 47 47 H 0.96995 * 119.99539 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.46354 * 301.73075 * 25 11 10 49 49 H 1.08997 * 109.45220 * 181.75530 * 25 11 10 50 50 H 1.08999 * 109.50377 * 180.87707 * 26 25 11 51 51 H 1.08993 * 109.54103 * 60.77424 * 26 25 11 52 52 H 1.08003 * 120.03506 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2028 -0.0058 5 6 4.2764 0.0099 0.0000 6 6 3.5859 -1.1953 0.0057 7 7 4.2867 -2.4034 0.0110 8 6 5.7518 -2.4006 0.0100 9 6 6.2622 -2.2887 -1.4293 10 6 7.7915 -2.3474 -1.4290 11 7 8.2338 -3.6135 -0.8307 12 6 9.6909 -3.7661 -0.9390 13 6 10.1193 -3.5536 -2.3923 14 1 9.8036 -2.5642 -2.7232 15 6 9.4686 -4.6190 -3.2768 16 6 11.6418 -3.6646 -2.4965 17 6 12.0744 -3.3346 -3.9018 18 1 11.3373 -3.0716 -4.6461 19 6 13.4114 -3.3674 -4.2373 20 7 14.3090 -3.6872 -3.3308 21 14 13.9477 -2.9577 -5.9790 22 1 14.2121 -1.5002 -6.0857 23 1 15.1854 -3.7104 -6.3058 24 1 12.8722 -3.3366 -6.9302 25 6 7.7956 -3.7222 0.5666 26 6 6.2665 -3.7046 0.6259 27 6 2.1966 -1.1962 0.0058 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6559 2.1325 0.0004 32 1 4.1166 2.1403 -0.0103 33 1 5.3564 0.0141 -0.0005 34 1 3.8034 -3.2445 0.0154 35 1 6.1147 -1.5541 0.5930 36 1 5.8664 -3.1141 -2.0209 37 1 5.9344 -1.3421 -1.8591 38 1 8.1868 -1.5138 -0.8486 39 1 8.1574 -2.2825 -2.4537 40 1 10.1816 -3.0286 -0.3040 41 1 9.9759 -4.7683 -0.6190 42 1 8.3840 -4.5399 -3.2026 43 1 9.7742 -4.4678 -4.3121 44 1 9.7843 -5.6084 -2.9460 45 1 12.1054 -2.9660 -1.8000 46 1 11.9496 -4.6809 -2.2508 47 1 15.2496 -3.7099 -3.5667 48 1 8.1909 -2.8821 1.1376 49 1 8.1647 -4.6558 0.9912 50 1 5.9418 -3.7696 1.6644 51 1 5.8702 -4.5522 0.0670 52 1 1.6567 -2.1315 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602471209.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:10 Heat of formation + Delta-G solvation = 5.938488 kcal Electronic energy + Delta-G solvation = -26227.408894 eV Core-core repulsion = 22804.298443 eV Total energy + Delta-G solvation = -3423.110451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02935 -38.95560 -36.53262 -34.65968 -32.72721 -32.33071 -31.33752 -30.82554 -28.74332 -27.05158 -26.81472 -25.64550 -23.61405 -23.27549 -22.47607 -22.06329 -20.66932 -19.88586 -18.69387 -17.23874 -16.66432 -16.36557 -15.92409 -15.28012 -14.89190 -14.63373 -14.53900 -14.42037 -14.17100 -13.95399 -13.72775 -13.66837 -13.36539 -12.88614 -12.59932 -12.55935 -12.41524 -12.23912 -12.04516 -11.80258 -11.51074 -11.41215 -11.23595 -11.21779 -11.01021 -10.89632 -10.85897 -10.73402 -10.55476 -10.29029 -10.19983 -9.99990 -9.55842 -9.15033 -8.93773 -8.85464 -8.32738 -8.03077 -7.52397 -5.97769 -3.98793 1.28696 1.50411 3.22332 3.32743 3.39201 3.42517 3.73752 4.10978 4.48050 4.55779 4.68351 4.75119 4.79990 4.96262 5.01671 5.14946 5.20246 5.27464 5.31665 5.33439 5.35366 5.38083 5.49705 5.52740 5.59400 5.62654 5.66972 5.74579 5.80476 5.85138 5.91985 5.97875 5.99956 6.09214 6.16908 6.21055 6.26983 6.41634 6.42864 6.53223 6.54614 6.66162 6.74518 7.00804 7.13469 7.19960 7.23256 7.38697 7.41818 7.58630 7.69009 7.84804 8.02331 8.46243 9.07462 9.64511 11.13716 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.002215 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.391417 B =12640.340125 C =13321.535034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.042 4.042 3 C -0.185 4.185 4 C -0.069 4.069 5 C -0.204 4.204 6 C 0.225 3.775 7 N -0.742 5.742 8 C 0.151 3.849 9 C -0.128 4.128 10 C 0.051 3.949 11 N -0.534 5.534 12 C 0.061 3.939 13 C -0.086 4.086 14 H 0.057 0.943 15 C -0.123 4.123 16 C 0.027 3.973 17 C -0.512 4.512 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.058 3.942 26 C -0.120 4.120 27 C -0.201 4.201 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.397 0.603 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.029 0.971 39 H 0.091 0.909 40 H 0.027 0.973 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.053 0.947 44 H 0.040 0.960 45 H 0.012 0.988 46 H 0.016 0.984 47 H 0.259 0.741 48 H 0.031 0.969 49 H 0.077 0.923 50 H 0.068 0.932 51 H 0.075 0.925 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.184 4.860 10.079 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.043 4.043 3 C -0.205 4.205 4 C -0.087 4.087 5 C -0.227 4.227 6 C 0.121 3.879 7 N -0.369 5.369 8 C 0.046 3.954 9 C -0.167 4.167 10 C -0.077 4.077 11 N -0.259 5.259 12 C -0.066 4.066 13 C -0.105 4.105 14 H 0.076 0.924 15 C -0.180 4.180 16 C -0.010 4.010 17 C -0.550 4.550 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.071 4.071 26 C -0.158 4.158 27 C -0.224 4.224 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.232 0.768 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.109 0.891 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.030 0.970 46 H 0.035 0.965 47 H 0.069 0.931 48 H 0.049 0.951 49 H 0.095 0.905 50 H 0.086 0.914 51 H 0.094 0.906 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.005 4.461 9.852 27.244 hybrid contribution 0.774 0.553 -0.463 1.058 sum -24.231 5.014 9.389 26.466 Atomic orbital electron populations 1.20794 0.91567 1.02598 1.02153 1.19606 0.95486 0.92685 0.96505 1.20744 0.94137 0.97132 1.08522 1.20884 0.94091 0.97312 0.96443 1.20700 0.99734 0.91242 1.10979 1.17815 0.90893 0.86489 0.92663 1.44824 1.05202 1.05084 1.81805 1.21021 0.79351 0.98527 0.96507 1.22075 0.95538 1.02470 0.96649 1.22163 0.94090 0.90073 1.01414 1.62017 1.14221 1.33971 1.15694 1.22299 0.84748 1.00656 0.98883 1.21325 0.99223 0.98475 0.91484 0.92426 1.21591 0.98365 0.98131 0.99931 1.19118 0.87898 0.97113 0.96879 1.21222 0.91900 1.45848 0.96042 0.92613 1.25027 0.96953 0.95573 0.97057 1.69966 1.01190 1.49054 1.33416 0.86630 0.78119 0.78309 0.85160 1.20777 1.21312 1.19896 1.21984 0.94016 1.01128 0.89940 1.21816 0.96040 0.97314 1.00647 1.20406 0.91913 0.97926 1.12113 0.91270 0.91595 0.91717 0.86759 0.86351 0.86162 0.76819 0.90746 0.90869 0.91532 0.95253 0.89075 0.95437 0.91100 0.94004 0.92791 0.94042 0.96965 0.96537 0.93115 0.95083 0.90466 0.91383 0.90634 0.86570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 2 C -0.04 -0.39 5.88 -104.66 -0.62 -1.01 16 3 C -0.19 -1.75 9.70 -39.54 -0.38 -2.13 16 4 C -0.07 -0.68 10.04 -39.61 -0.40 -1.07 16 5 C -0.20 -2.18 8.90 -39.38 -0.35 -2.53 16 6 C 0.23 2.34 6.64 -83.79 -0.56 1.79 16 7 N -0.74 -6.90 5.25 -52.04 -0.27 -7.17 16 8 C 0.15 1.51 2.21 -67.80 -0.15 1.36 16 9 C -0.13 -1.46 5.64 -26.65 -0.15 -1.61 16 10 C 0.05 0.69 4.97 -3.83 -0.02 0.67 16 11 N -0.53 -7.55 4.08 -234.68 -0.96 -8.51 16 12 C 0.06 1.04 4.55 -3.82 -0.02 1.02 16 13 C -0.09 -1.73 1.85 -90.62 -0.17 -1.90 16 14 H 0.06 1.17 6.07 -51.93 -0.32 0.85 16 15 C -0.12 -2.35 8.79 37.16 0.33 -2.03 16 16 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 17 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 18 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 21 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.06 0.68 5.46 -3.84 -0.02 0.66 16 26 C -0.12 -1.15 5.57 -26.65 -0.15 -1.30 16 27 C -0.20 -1.95 9.55 -39.38 -0.38 -2.32 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 30 H 0.06 0.39 8.08 -51.92 -0.42 -0.03 16 31 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.12 1.26 6.12 -52.49 -0.32 0.94 16 34 H 0.40 3.16 8.62 -40.82 -0.35 2.81 16 35 H 0.07 0.79 6.48 -51.93 -0.34 0.45 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.77 7.75 -51.93 -0.40 0.36 16 38 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 1.38 5.70 -51.93 -0.30 1.08 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.04 0.72 7.54 -51.93 -0.39 0.32 16 43 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 400.15 15.07 6.03 6.03 Total: -1.00 -29.83 400.15 -12.12 -41.95 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -9.46 Total: 0.52 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -3.18 Total: -23.32 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.50 Total: -41.87 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.83 -12.12 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602471209.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.889 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds