Wall clock time and date at job start Tue Mar 31 2020 10:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38311 * 119.96225 * 2 1 4 4 C 1.38267 * 120.15013 * 180.28001 * 3 2 1 5 5 C 1.38119 * 120.07397 * 359.44085 * 4 3 2 6 6 C 1.38895 * 119.92473 * 0.28428 * 5 4 3 7 7 N 1.39671 * 120.07334 * 179.97438 * 6 5 4 8 8 C 1.46506 * 120.00334 * 359.97438 * 7 6 5 9 9 C 1.53122 * 109.52073 * 274.68147 * 8 7 6 10 10 C 1.53040 * 109.27603 * 182.43558 * 9 8 7 11 11 N 1.46851 * 109.51865 * 59.18179 * 10 9 8 12 12 C 1.46905 * 110.99389 * 174.15848 * 11 10 9 13 13 C 1.52998 * 109.47110 * 307.98988 * 12 11 10 14 14 H 1.09000 * 109.47368 * 58.05126 * 13 12 11 15 15 C 1.53005 * 109.47072 * 298.05384 * 13 12 11 16 16 C 1.53003 * 109.46953 * 178.05688 * 13 12 11 17 17 C 1.50700 * 109.46920 * 184.99853 * 16 13 12 18 18 H 1.07996 * 120.00307 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00114 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99606 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00070 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47270 * 90.00410 * 21 19 17 23 23 H 1.48505 * 109.46926 * 209.99740 * 21 19 17 24 24 H 1.48493 * 109.47483 * 329.99870 * 21 19 17 25 25 C 1.46841 * 111.19761 * 298.25243 * 11 10 9 26 26 C 1.53036 * 109.52332 * 61.75044 * 25 11 10 27 27 C 1.38080 * 119.96684 * 179.72365 * 2 1 3 28 28 H 1.09005 * 109.46934 * 270.27475 * 1 2 3 29 29 H 1.08992 * 109.47482 * 30.27622 * 1 2 3 30 30 H 1.09007 * 109.47231 * 150.27790 * 1 2 3 31 31 H 1.08002 * 119.92624 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.95894 * 179.72317 * 4 3 2 33 33 H 1.08000 * 120.04120 * 180.25072 * 5 4 3 34 34 H 0.97003 * 120.00311 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.52061 * 34.86904 * 8 7 6 36 36 H 1.08994 * 109.50268 * 302.38146 * 9 8 7 37 37 H 1.09007 * 109.50009 * 62.49698 * 9 8 7 38 38 H 1.08995 * 109.46294 * 299.16347 * 10 9 8 39 39 H 1.09000 * 109.45050 * 179.18903 * 10 9 8 40 40 H 1.08990 * 109.47343 * 67.99107 * 12 11 10 41 41 H 1.08998 * 109.46742 * 187.99381 * 12 11 10 42 42 H 1.09001 * 109.46840 * 60.00500 * 15 13 12 43 43 H 1.09001 * 109.46732 * 180.02562 * 15 13 12 44 44 H 1.08997 * 109.47202 * 299.99739 * 15 13 12 45 45 H 1.08998 * 109.46728 * 304.99883 * 16 13 12 46 46 H 1.08996 * 109.47054 * 64.99951 * 16 13 12 47 47 H 0.96995 * 119.99539 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.46354 * 301.73075 * 25 11 10 49 49 H 1.08997 * 109.45220 * 181.75530 * 25 11 10 50 50 H 1.08999 * 109.50377 * 180.87707 * 26 25 11 51 51 H 1.08993 * 109.54103 * 60.77424 * 26 25 11 52 52 H 1.08003 * 120.03506 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1983 0.0000 4 6 3.5804 1.2028 -0.0058 5 6 4.2764 0.0099 0.0000 6 6 3.5859 -1.1953 0.0057 7 7 4.2867 -2.4034 0.0110 8 6 5.7518 -2.4006 0.0100 9 6 6.2622 -2.2887 -1.4293 10 6 7.7915 -2.3474 -1.4290 11 7 8.2338 -3.6135 -0.8307 12 6 9.6909 -3.7661 -0.9390 13 6 10.1193 -3.5536 -2.3923 14 1 9.8036 -2.5642 -2.7232 15 6 9.4686 -4.6190 -3.2768 16 6 11.6418 -3.6646 -2.4965 17 6 12.0744 -3.3346 -3.9018 18 1 11.3373 -3.0716 -4.6461 19 6 13.4114 -3.3674 -4.2373 20 7 14.3090 -3.6872 -3.3308 21 14 13.9477 -2.9577 -5.9790 22 1 14.2121 -1.5002 -6.0857 23 1 15.1854 -3.7104 -6.3058 24 1 12.8722 -3.3366 -6.9302 25 6 7.7956 -3.7222 0.5666 26 6 6.2665 -3.7046 0.6259 27 6 2.1966 -1.1962 0.0058 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3634 -0.8925 -0.5095 31 1 1.6559 2.1325 0.0004 32 1 4.1166 2.1403 -0.0103 33 1 5.3564 0.0141 -0.0005 34 1 3.8034 -3.2445 0.0154 35 1 6.1147 -1.5541 0.5930 36 1 5.8664 -3.1141 -2.0209 37 1 5.9344 -1.3421 -1.8591 38 1 8.1868 -1.5138 -0.8486 39 1 8.1574 -2.2825 -2.4537 40 1 10.1816 -3.0286 -0.3040 41 1 9.9759 -4.7683 -0.6190 42 1 8.3840 -4.5399 -3.2026 43 1 9.7742 -4.4678 -4.3121 44 1 9.7843 -5.6084 -2.9460 45 1 12.1054 -2.9660 -1.8000 46 1 11.9496 -4.6809 -2.2508 47 1 15.2496 -3.7099 -3.5667 48 1 8.1909 -2.8821 1.1376 49 1 8.1647 -4.6558 0.9912 50 1 5.9418 -3.7696 1.6644 51 1 5.8702 -4.5522 0.0670 52 1 1.6567 -2.1315 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602471209.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:09 Heat of formation + Delta-G solvation = -8.984716 kcal Electronic energy + Delta-G solvation = -26228.056013 eV Core-core repulsion = 22804.298443 eV Total energy + Delta-G solvation = -3423.757570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87229 -39.91048 -37.69601 -36.02518 -34.36689 -33.19227 -32.52116 -31.83012 -29.68314 -28.70408 -27.67809 -26.99793 -25.14366 -24.28712 -23.46296 -23.20750 -21.50909 -20.80910 -20.26097 -18.54015 -17.98349 -17.41483 -16.85662 -16.54674 -16.14255 -16.05232 -15.82169 -15.35825 -15.08339 -14.93317 -14.73880 -14.49937 -14.42466 -14.08471 -13.98212 -13.69209 -13.37170 -13.31502 -13.11984 -12.97508 -12.92013 -12.77818 -12.60539 -12.42962 -12.24467 -12.16009 -12.09825 -11.98484 -11.84957 -11.66117 -11.44954 -11.37804 -11.06280 -10.90396 -10.68876 -10.52624 -9.55989 -9.21909 -8.26588 -8.17719 -6.26502 0.56634 0.77331 1.39567 1.40336 1.51415 2.41362 2.46911 2.97177 3.01174 3.15634 3.72923 3.86304 3.98604 4.08710 4.10499 4.13799 4.23489 4.32463 4.35459 4.43241 4.50179 4.51988 4.55051 4.59644 4.63089 4.69207 4.79535 4.86213 4.88532 4.89894 4.93857 4.95851 5.00961 5.02660 5.08522 5.13287 5.18035 5.29339 5.30278 5.34800 5.47203 5.48715 5.50487 5.55398 5.70337 5.80943 5.84670 5.88682 6.04040 6.10863 6.23909 6.32187 6.48645 6.89293 6.91148 7.41476 8.94212 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.002215 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.391417 B =12640.340125 C =13321.535034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.050 4.050 3 C -0.195 4.195 4 C -0.079 4.079 5 C -0.223 4.223 6 C 0.214 3.786 7 N -0.736 5.736 8 C 0.159 3.841 9 C -0.117 4.117 10 C 0.052 3.948 11 N -0.533 5.533 12 C 0.072 3.928 13 C -0.077 4.077 14 H 0.056 0.944 15 C -0.111 4.111 16 C 0.033 3.967 17 C -0.527 4.527 18 H 0.060 0.940 19 C -0.003 4.003 20 N -0.934 5.934 21 Si 0.960 3.040 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.264 1.264 25 C 0.055 3.945 26 C -0.109 4.109 27 C -0.210 4.210 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.405 0.595 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.073 0.927 40 H 0.019 0.981 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.037 0.963 45 H -0.015 1.015 46 H -0.009 1.009 47 H 0.261 0.739 48 H 0.031 0.969 49 H 0.084 0.916 50 H 0.086 0.914 51 H 0.079 0.921 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.508 5.002 9.895 29.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.050 4.050 3 C -0.215 4.215 4 C -0.098 4.098 5 C -0.245 4.245 6 C 0.110 3.890 7 N -0.364 5.364 8 C 0.053 3.947 9 C -0.156 4.156 10 C -0.076 4.076 11 N -0.258 5.258 12 C -0.055 4.055 13 C -0.096 4.096 14 H 0.074 0.926 15 C -0.169 4.169 16 C -0.005 4.005 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.201 4.201 20 N -0.575 5.575 21 Si 0.785 3.215 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.188 1.188 25 C -0.073 4.073 26 C -0.147 4.147 27 C -0.232 4.232 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.134 0.866 34 H 0.241 0.759 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.003 0.997 46 H 0.010 0.990 47 H 0.070 0.930 48 H 0.049 0.951 49 H 0.102 0.898 50 H 0.104 0.896 51 H 0.098 0.902 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -27.361 4.601 9.672 29.383 hybrid contribution 1.468 0.546 -0.364 1.608 sum -25.893 5.147 9.308 27.993 Atomic orbital electron populations 1.20834 0.89718 1.03412 1.02978 1.19981 0.96993 0.92476 0.95598 1.21022 0.94144 0.98061 1.08291 1.21123 0.94640 0.97672 0.96315 1.20805 0.99727 0.91907 1.12104 1.17967 0.91399 0.86637 0.92995 1.44697 1.04728 1.05232 1.81781 1.20861 0.79875 0.98667 0.95299 1.21956 0.93698 1.02178 0.97781 1.22131 0.95604 0.89709 1.00194 1.62004 1.11845 1.34281 1.17669 1.22022 0.86858 1.00320 0.96335 1.21128 0.95502 0.98879 0.94066 0.92591 1.21468 0.99616 0.97382 0.98407 1.19007 0.91564 0.94606 0.95288 1.21617 0.92302 1.45461 0.97118 0.92210 1.25953 0.97145 0.95451 1.01519 1.70101 1.01556 1.50178 1.35677 0.85517 0.77815 0.78277 0.79878 1.19969 1.20922 1.18789 1.22093 0.95573 1.01488 0.88148 1.21730 0.94158 0.97020 1.01808 1.20642 0.91757 0.98815 1.11992 0.90336 0.90751 0.90983 0.85250 0.85187 0.86597 0.75884 0.91236 0.91226 0.91728 0.95590 0.90866 0.96298 0.91201 0.91656 0.94516 0.94379 0.99706 0.99040 0.92979 0.95097 0.89788 0.89552 0.90241 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 10.01 71.23 0.71 -0.53 16 2 C -0.05 -0.84 5.88 -19.89 -0.12 -0.95 16 3 C -0.20 -3.41 9.70 22.29 0.22 -3.20 16 4 C -0.08 -1.49 10.04 22.25 0.22 -1.27 16 5 C -0.22 -4.61 8.90 22.40 0.20 -4.41 16 6 C 0.21 4.18 6.64 38.22 0.25 4.43 16 7 N -0.74 -12.40 5.25 -318.56 -1.67 -14.07 16 8 C 0.16 2.91 2.21 45.07 0.10 3.01 16 9 C -0.12 -2.54 5.64 30.65 0.17 -2.37 16 10 C 0.05 1.38 4.97 86.33 0.43 1.81 16 11 N -0.53 -14.60 4.08 -896.38 -3.66 -18.26 16 12 C 0.07 2.47 4.55 86.30 0.39 2.86 16 13 C -0.08 -3.14 1.85 -10.79 -0.02 -3.16 16 14 H 0.06 2.30 6.07 -2.39 -0.01 2.29 16 15 C -0.11 -4.24 8.79 71.98 0.63 -3.61 16 16 C 0.03 1.74 4.45 29.85 0.13 1.87 16 17 C -0.53 -29.91 8.41 25.60 0.22 -29.69 16 18 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 19 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 20 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 21 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 25 C 0.06 1.20 5.46 86.33 0.47 1.67 16 26 C -0.11 -1.84 5.57 30.65 0.17 -1.67 16 27 C -0.21 -3.71 9.55 22.40 0.21 -3.49 16 28 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 30 H 0.07 0.69 8.08 -2.38 -0.02 0.67 16 31 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 32 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 33 H 0.12 2.41 6.12 -2.91 -0.02 2.39 16 34 H 0.41 5.53 8.62 -92.71 -0.80 4.73 16 35 H 0.07 1.39 6.48 -2.39 -0.02 1.37 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.44 7.75 -2.38 -0.02 1.42 16 38 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 2.20 5.70 -2.39 -0.01 2.19 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.06 2.16 7.54 -2.39 -0.02 2.15 16 43 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 46 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 47 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 48 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 50 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 51 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -64.55 400.15 1.91 -62.64 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.07 Total: 18.36 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 4.86 Total: -38.43 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -5.05 Total: -89.38 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.55 1.91 -62.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602471209.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.657 kcal (2) G-P(sol) polarization free energy of solvation -64.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds