Wall clock time and date at job start Tue Mar 31 2020 11:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 N 1.46895 * 109.47270 * 295.00157 * 13 2 1 15 15 C 1.46905 * 111.00199 * 293.95149 * 14 13 2 16 16 C 1.46903 * 110.99856 * 169.99896 * 14 13 2 17 17 H 1.08998 * 109.50412 * 309.91884 * 16 14 13 18 18 C 1.53121 * 109.50300 * 70.00245 * 16 14 13 19 19 C 1.53122 * 109.15807 * 177.59554 * 18 16 14 20 20 C 1.53042 * 109.27782 * 302.34340 * 19 18 16 21 21 N 1.46843 * 109.52171 * 59.18020 * 20 19 18 22 22 C 1.39680 * 110.99649 * 174.16003 * 21 20 19 23 23 C 1.38910 * 120.07292 * 235.76854 * 22 21 20 24 24 C 1.38110 * 119.91827 * 179.77024 * 23 22 21 25 25 C 1.38276 * 120.07734 * 0.50902 * 24 23 22 26 26 C 1.38282 * 120.15355 * 359.74558 * 25 24 23 27 27 C 1.38107 * 120.07131 * 359.97438 * 26 25 24 28 28 C 1.46844 * 111.20095 * 298.25802 * 21 20 19 29 29 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 30 30 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 31 31 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 33 33 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 34 34 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46945 * 55.00387 * 13 2 1 36 36 H 1.09002 * 109.47045 * 174.99748 * 13 2 1 37 37 H 1.08997 * 109.46756 * 59.99924 * 15 14 13 38 38 H 1.09001 * 109.47143 * 179.97438 * 15 14 13 39 39 H 1.08997 * 109.46972 * 300.00083 * 15 14 13 40 40 H 1.08995 * 109.51910 * 297.49507 * 18 16 14 41 41 H 1.08997 * 109.52339 * 57.68875 * 18 16 14 42 42 H 1.08997 * 109.50635 * 62.28370 * 19 18 16 43 43 H 1.08999 * 109.50052 * 182.36500 * 19 18 16 44 44 H 1.09001 * 109.46234 * 179.19810 * 20 19 18 45 45 H 1.09000 * 109.46005 * 299.15980 * 20 19 18 46 46 H 1.07997 * 120.04122 * 0.02562 * 23 22 21 47 47 H 1.08006 * 119.95659 * 180.25314 * 24 23 22 48 48 H 1.08006 * 119.92338 * 179.72276 * 25 24 23 49 49 H 1.08000 * 119.96617 * 180.02562 * 26 25 24 50 50 H 1.08003 * 120.03666 * 180.02562 * 27 26 25 51 51 H 1.09005 * 109.45970 * 301.72608 * 28 21 20 52 52 H 1.08995 * 109.46595 * 181.76184 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 2.6809 -1.5159 -3.8509 9 14 1.5101 0.5700 -5.2489 10 1 2.5773 1.5499 -5.5748 11 1 1.3274 -0.3610 -6.3913 12 1 0.2382 1.2913 -4.9897 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.3341 1.3374 2.4895 16 6 1.9125 -0.7358 3.6670 17 1 1.4847 -1.7331 3.5648 18 6 3.4236 -0.8478 3.8880 19 6 3.6859 -1.6029 5.1940 20 6 2.9997 -0.8691 6.3485 21 7 1.5564 -0.7887 6.0900 22 6 0.8817 -0.2420 7.1841 23 6 -0.1600 -0.9416 7.7799 24 6 -0.8218 -0.4002 8.8645 25 6 -0.4554 0.8414 9.3507 26 6 0.5777 1.5428 8.7567 27 6 1.2475 1.0047 7.6754 28 6 1.2777 -0.0272 4.8658 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7993 -1.2057 34 1 2.9313 -1.8368 -4.7314 35 1 1.6054 -1.7198 1.2950 36 1 3.1263 -0.7995 1.2055 37 1 2.0679 1.9176 1.6060 38 1 2.0281 1.8785 3.3848 39 1 3.4126 1.1809 2.5099 40 1 3.8739 -1.3903 3.0568 41 1 3.8574 0.1501 3.9507 42 1 3.2859 -2.6139 5.1165 43 1 4.7592 -1.6492 5.3782 44 1 3.1726 -1.4120 7.2777 45 1 3.4100 0.1371 6.4342 46 1 -0.4494 -1.9095 7.3981 47 1 -1.6292 -0.9453 9.3308 48 1 -0.9776 1.2644 10.1962 49 1 0.8616 2.5120 9.1392 50 1 2.0546 1.5529 7.2121 51 1 1.6960 0.9751 4.9585 52 1 0.2000 0.0415 4.7181 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602475322.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:01 Heat of formation + Delta-G solvation = 25.152984 kcal Electronic energy + Delta-G solvation = -26797.586882 eV Core-core repulsion = 23375.309634 eV Total energy + Delta-G solvation = -3422.277248 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.56760 -38.86750 -36.92892 -34.58914 -33.00933 -31.96077 -31.17588 -29.84939 -28.99609 -27.19526 -26.52753 -24.99320 -24.38695 -22.94707 -22.71746 -21.99412 -20.89390 -19.28440 -18.76110 -17.65615 -16.41774 -16.25899 -15.55748 -15.41935 -15.04301 -14.91769 -14.75115 -14.39334 -13.99627 -13.91517 -13.77174 -13.60783 -13.43854 -12.99430 -12.74928 -12.51203 -12.33788 -12.11997 -11.80103 -11.60076 -11.50078 -11.44319 -11.38611 -11.08078 -10.88402 -10.83072 -10.80336 -10.64901 -10.45145 -10.25563 -10.19140 -9.56122 -9.19634 -9.10764 -8.98552 -8.88574 -8.63558 -8.30298 -7.92501 -5.95335 -3.96083 1.03149 1.14906 3.34225 3.40583 3.43684 3.45280 3.52389 4.29399 4.50670 4.61388 4.70100 4.71236 4.76638 4.82170 4.85872 5.10140 5.16124 5.20275 5.25641 5.30610 5.40240 5.40409 5.45834 5.50853 5.61445 5.68587 5.72129 5.78323 5.79566 5.84525 5.91557 5.97997 6.07044 6.12640 6.19323 6.20780 6.25704 6.26727 6.33124 6.45257 6.58509 6.59879 6.74043 6.75618 7.06693 7.17575 7.22806 7.25387 7.43077 7.47596 7.72611 7.89140 8.05347 8.49666 9.10322 9.67033 11.16209 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.002352 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.481753 B =11904.427056 C =12351.625583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.531 5.531 15 C 0.018 3.982 16 C 0.089 3.911 17 H 0.089 0.911 18 C -0.157 4.157 19 C -0.112 4.112 20 C 0.061 3.939 21 N -0.504 5.504 22 C 0.096 3.904 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.127 4.127 26 C -0.112 4.112 27 C -0.150 4.150 28 C 0.073 3.927 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.039 0.961 32 H 0.016 0.984 33 H 0.011 0.989 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.026 0.974 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.129 0.871 47 H 0.124 0.876 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.038 0.962 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.805 2.872 27.326 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.253 5.253 15 C -0.130 4.130 16 C -0.020 4.020 17 H 0.107 0.893 18 C -0.196 4.196 19 C -0.150 4.150 20 C -0.065 4.065 21 N -0.226 5.226 22 C 0.002 3.998 23 C -0.115 4.115 24 C -0.134 4.134 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.170 4.170 28 C -0.053 4.053 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.053 0.947 46 H 0.147 0.853 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.135 0.865 51 H 0.056 0.944 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.407 2.361 27.051 27.260 hybrid contribution 1.092 1.161 -0.796 1.782 sum -1.315 3.522 26.255 26.522 Atomic orbital electron populations 1.21576 0.95787 1.00497 1.00087 1.21223 0.95938 0.99051 0.93741 0.92638 1.19123 0.95828 0.95585 0.90501 1.21234 1.34389 1.08264 0.90993 0.92618 1.25025 0.95400 0.95112 0.99082 1.69969 1.39143 1.21256 1.23331 0.86637 0.78893 0.79829 0.82897 1.20815 1.21322 1.19894 1.22318 0.97625 0.97165 0.89310 1.62157 1.57728 1.03829 1.01625 1.22480 0.96255 0.91997 1.02307 1.21688 0.92953 0.98021 0.89343 0.89283 1.22322 0.98461 1.00842 0.98016 1.21525 0.99618 1.00018 0.93867 1.22146 0.86124 0.99285 0.98992 1.59471 1.08998 1.52481 1.01613 1.18830 0.95676 0.92113 0.93177 1.21096 0.94934 1.00108 0.95313 1.21127 0.99813 0.95842 0.96577 1.21164 0.97703 0.95327 1.00296 1.21021 0.96204 0.99764 0.96093 1.21684 1.01021 0.96196 0.98075 1.22134 1.01609 0.94123 0.87420 0.93954 0.92880 0.94225 0.96603 0.97036 0.93143 0.91369 0.95216 0.90695 0.92341 0.95562 0.91215 0.91815 0.90860 0.91447 0.90747 0.94676 0.85281 0.85805 0.86168 0.86254 0.86505 0.94392 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.65 2.26 -90.62 -0.20 -1.86 16 3 H 0.06 1.16 6.34 -51.92 -0.33 0.83 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.37 8.41 -34.44 -0.29 -14.65 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.06 1.09 3.92 -3.83 -0.02 1.07 16 14 N -0.53 -7.77 4.17 -234.79 -0.98 -8.74 16 15 C 0.02 0.24 8.45 60.07 0.51 0.75 16 16 C 0.09 1.12 2.35 -67.63 -0.16 0.96 16 17 H 0.09 1.21 7.93 -51.93 -0.41 0.80 16 18 C -0.16 -1.80 4.56 -26.61 -0.12 -1.93 16 19 C -0.11 -1.09 6.09 -26.65 -0.16 -1.25 16 20 C 0.06 0.59 5.06 -3.83 -0.02 0.57 16 21 N -0.50 -5.39 4.62 -171.15 -0.79 -6.18 16 22 C 0.10 0.99 4.68 -83.78 -0.39 0.60 16 23 C -0.10 -0.91 9.97 -39.38 -0.39 -1.30 16 24 C -0.12 -0.93 10.04 -39.61 -0.40 -1.33 16 25 C -0.13 -0.99 10.04 -39.55 -0.40 -1.39 16 26 C -0.11 -0.93 10.04 -39.61 -0.40 -1.33 16 27 C -0.15 -1.42 8.74 -39.38 -0.34 -1.77 16 28 C 0.07 0.85 4.45 -3.83 -0.02 0.83 16 29 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 30 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 36 H 0.03 0.53 7.12 -51.93 -0.37 0.16 16 37 H 0.07 1.11 6.37 -51.93 -0.33 0.78 16 38 H 0.06 0.70 6.28 -51.93 -0.33 0.38 16 39 H 0.03 0.35 6.41 -51.93 -0.33 0.02 16 40 H 0.07 0.88 7.03 -51.93 -0.37 0.52 16 41 H 0.06 0.74 6.29 -51.93 -0.33 0.41 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 45 H 0.04 0.33 7.15 -51.93 -0.37 -0.04 16 46 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 48 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.12 1.06 7.13 -52.48 -0.37 0.68 16 51 H 0.04 0.44 6.08 -51.93 -0.32 0.12 16 52 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -29.80 392.06 -12.02 -41.82 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -9.18 Total: -1.20 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -2.69 Total: -22.05 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: -1.03 Total: -41.32 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.80 -12.02 -41.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475322.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.976 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds