Wall clock time and date at job start Tue Mar 31 2020 11:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.52994 * 109.47216 * 119.99968 * 2 1 3 14 14 N 1.46895 * 109.47270 * 295.00157 * 13 2 1 15 15 C 1.46905 * 111.00199 * 293.95149 * 14 13 2 16 16 C 1.46903 * 110.99856 * 169.99896 * 14 13 2 17 17 H 1.08998 * 109.50412 * 309.91884 * 16 14 13 18 18 C 1.53121 * 109.50300 * 70.00245 * 16 14 13 19 19 C 1.53122 * 109.15807 * 177.59554 * 18 16 14 20 20 C 1.53042 * 109.27782 * 302.34340 * 19 18 16 21 21 N 1.46843 * 109.52171 * 59.18020 * 20 19 18 22 22 C 1.39680 * 110.99649 * 174.16003 * 21 20 19 23 23 C 1.38910 * 120.07292 * 235.76854 * 22 21 20 24 24 C 1.38110 * 119.91827 * 179.77024 * 23 22 21 25 25 C 1.38276 * 120.07734 * 0.50902 * 24 23 22 26 26 C 1.38282 * 120.15355 * 359.74558 * 25 24 23 27 27 C 1.38107 * 120.07131 * 359.97438 * 26 25 24 28 28 C 1.46844 * 111.20095 * 298.25802 * 21 20 19 29 29 H 1.09001 * 109.46786 * 299.99917 * 1 2 3 30 30 H 1.09001 * 109.46849 * 59.99383 * 1 2 3 31 31 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 33 33 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 34 34 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.46945 * 55.00387 * 13 2 1 36 36 H 1.09002 * 109.47045 * 174.99748 * 13 2 1 37 37 H 1.08997 * 109.46756 * 59.99924 * 15 14 13 38 38 H 1.09001 * 109.47143 * 179.97438 * 15 14 13 39 39 H 1.08997 * 109.46972 * 300.00083 * 15 14 13 40 40 H 1.08995 * 109.51910 * 297.49507 * 18 16 14 41 41 H 1.08997 * 109.52339 * 57.68875 * 18 16 14 42 42 H 1.08997 * 109.50635 * 62.28370 * 19 18 16 43 43 H 1.08999 * 109.50052 * 182.36500 * 19 18 16 44 44 H 1.09001 * 109.46234 * 179.19810 * 20 19 18 45 45 H 1.09000 * 109.46005 * 299.15980 * 20 19 18 46 46 H 1.07997 * 120.04122 * 0.02562 * 23 22 21 47 47 H 1.08006 * 119.95659 * 180.25314 * 24 23 22 48 48 H 1.08006 * 119.92338 * 179.72276 * 25 24 23 49 49 H 1.08000 * 119.96617 * 180.02562 * 26 25 24 50 50 H 1.08003 * 120.03666 * 180.02562 * 27 26 25 51 51 H 1.09005 * 109.45970 * 301.72608 * 28 21 20 52 52 H 1.08995 * 109.46595 * 181.76184 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9977 -0.3988 -3.7281 8 7 2.6809 -1.5159 -3.8509 9 14 1.5101 0.5700 -5.2489 10 1 2.5773 1.5499 -5.5748 11 1 1.3274 -0.3610 -6.3913 12 1 0.2382 1.2913 -4.9897 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.3341 1.3374 2.4895 16 6 1.9125 -0.7358 3.6670 17 1 1.4847 -1.7331 3.5648 18 6 3.4236 -0.8478 3.8880 19 6 3.6859 -1.6029 5.1940 20 6 2.9997 -0.8691 6.3485 21 7 1.5564 -0.7887 6.0900 22 6 0.8817 -0.2420 7.1841 23 6 -0.1600 -0.9416 7.7799 24 6 -0.8218 -0.4002 8.8645 25 6 -0.4554 0.8414 9.3507 26 6 0.5777 1.5428 8.7567 27 6 1.2475 1.0047 7.6754 28 6 1.2777 -0.0272 4.8658 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7993 -1.2057 34 1 2.9313 -1.8368 -4.7314 35 1 1.6054 -1.7198 1.2950 36 1 3.1263 -0.7995 1.2055 37 1 2.0679 1.9176 1.6060 38 1 2.0281 1.8785 3.3848 39 1 3.4126 1.1809 2.5099 40 1 3.8739 -1.3903 3.0568 41 1 3.8574 0.1501 3.9507 42 1 3.2859 -2.6139 5.1165 43 1 4.7592 -1.6492 5.3782 44 1 3.1726 -1.4120 7.2777 45 1 3.4100 0.1371 6.4342 46 1 -0.4494 -1.9095 7.3981 47 1 -1.6292 -0.9453 9.3308 48 1 -0.9776 1.2644 10.1962 49 1 0.8616 2.5120 9.1392 50 1 2.0546 1.5529 7.2121 51 1 1.6960 0.9751 4.9585 52 1 0.2000 0.0415 4.7181 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602475322.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:00 Heat of formation + Delta-G solvation = 9.828113 kcal Electronic energy + Delta-G solvation = -26798.251419 eV Core-core repulsion = 23375.309634 eV Total energy + Delta-G solvation = -3422.941785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40052 -39.80852 -38.04820 -36.13991 -34.34415 -33.55871 -31.80926 -30.85703 -29.83385 -28.93087 -28.06516 -26.24207 -25.51518 -24.36049 -23.59096 -22.87119 -21.84746 -20.52053 -20.15865 -18.53388 -18.35136 -17.09621 -16.73631 -16.41427 -16.20102 -16.03197 -15.92226 -15.73189 -15.08175 -15.00093 -14.72166 -14.58610 -14.31166 -14.26543 -14.17271 -13.81754 -13.43506 -13.30497 -13.20955 -12.91075 -12.78469 -12.62700 -12.55430 -12.42529 -12.24482 -12.17914 -12.12731 -11.96944 -11.73822 -11.67290 -11.48155 -11.30471 -11.04646 -10.86271 -10.52346 -9.83899 -9.65289 -9.42009 -9.12850 -8.16798 -6.25603 0.37308 0.50375 1.39982 1.41022 1.52141 2.41877 2.58767 2.86111 3.16498 3.21308 3.76424 3.79591 3.95844 4.05185 4.06869 4.11385 4.20665 4.28138 4.28658 4.34883 4.46024 4.49523 4.52444 4.57149 4.57267 4.62312 4.65263 4.77587 4.83418 4.84135 4.90973 4.92192 4.95454 5.00619 5.07038 5.13622 5.15606 5.21112 5.29227 5.33505 5.48494 5.50637 5.51564 5.57088 5.60134 5.63736 5.81414 5.89235 5.91075 5.96519 6.11713 6.24334 6.33170 6.48731 6.90234 7.42358 8.95256 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026273 B = 0.002352 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.481753 B =11904.427056 C =12351.625583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.071 4.071 3 H 0.055 0.945 4 C 0.033 3.967 5 C -0.526 4.526 6 H 0.060 0.940 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.077 3.923 14 N -0.533 5.533 15 C 0.020 3.980 16 C 0.092 3.908 17 H 0.077 0.923 18 C -0.152 4.152 19 C -0.106 4.106 20 C 0.064 3.936 21 N -0.509 5.509 22 C 0.077 3.923 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.128 4.128 26 C -0.117 4.117 27 C -0.159 4.159 28 C 0.086 3.914 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.034 0.966 32 H -0.011 1.011 33 H -0.015 1.015 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.022 0.978 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.028 0.972 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.039 0.961 46 H 0.127 0.873 47 H 0.145 0.855 48 H 0.144 0.856 49 H 0.138 0.862 50 H 0.118 0.882 51 H 0.041 0.959 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.487 4.369 29.070 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.188 1.188 13 C -0.050 4.050 14 N -0.256 5.256 15 C -0.128 4.128 16 C -0.016 4.016 17 H 0.095 0.905 18 C -0.191 4.191 19 C -0.145 4.145 20 C -0.062 4.062 21 N -0.231 5.231 22 C -0.017 4.017 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.146 4.146 26 C -0.136 4.136 27 C -0.179 4.179 28 C -0.041 4.041 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.007 0.993 33 H 0.003 0.997 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.057 0.943 46 H 0.145 0.855 47 H 0.162 0.838 48 H 0.162 0.838 49 H 0.156 0.844 50 H 0.136 0.864 51 H 0.059 0.941 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.093 3.867 28.820 29.242 hybrid contribution 1.294 0.677 -1.253 1.924 sum -1.800 4.544 27.566 27.996 Atomic orbital electron populations 1.21462 0.94818 1.00284 1.00324 1.21023 0.96571 0.98511 0.92885 0.92678 1.19007 0.93982 0.94670 0.92769 1.21620 1.34218 1.08529 0.92053 0.92186 1.25957 0.95327 0.96139 1.02643 1.70106 1.40316 1.22954 1.24240 0.85512 0.78997 0.78388 0.78558 1.19910 1.20939 1.18781 1.21992 0.96910 0.96760 0.89386 1.62083 1.57980 1.04181 1.01344 1.22488 0.96368 0.91257 1.02707 1.21654 0.93915 0.97267 0.88811 0.90473 1.22246 0.97265 1.01062 0.98531 1.21492 1.00646 0.99408 0.92904 1.22145 0.85514 0.99535 0.99029 1.59432 1.09682 1.52458 1.01509 1.18944 0.96392 0.92880 0.93455 1.21235 0.95226 1.00337 0.96123 1.21410 0.99978 0.96163 0.95989 1.21505 0.97370 0.95043 1.00657 1.21312 0.96065 1.00575 0.95631 1.21763 1.01430 0.96041 0.98706 1.21927 1.00599 0.94121 0.87451 0.91706 0.94456 0.94654 0.99259 0.99699 0.92981 0.91912 0.95945 0.91871 0.90325 0.95309 0.92686 0.91525 0.91353 0.89899 0.90063 0.94256 0.85458 0.83769 0.83775 0.84403 0.86383 0.94139 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.38 8.89 71.98 0.64 -3.74 16 2 C -0.07 -2.96 2.26 -10.80 -0.02 -2.98 16 3 H 0.05 2.30 6.34 -2.38 -0.02 2.29 16 4 C 0.03 1.78 4.45 29.85 0.13 1.91 16 5 C -0.53 -30.10 8.41 25.60 0.22 -29.88 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.94 -57.77 13.29 21.45 0.28 -57.49 16 9 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 13 C 0.08 2.72 3.92 86.30 0.34 3.06 16 14 N -0.53 -15.36 4.17 -896.74 -3.74 -19.10 16 15 C 0.02 0.51 8.45 127.69 1.08 1.59 16 16 C 0.09 2.29 2.35 44.97 0.11 2.40 16 17 H 0.08 2.11 7.93 -2.39 -0.02 2.10 16 18 C -0.15 -3.40 4.56 30.68 0.14 -3.26 16 19 C -0.11 -1.94 6.09 30.65 0.19 -1.76 16 20 C 0.06 1.14 5.06 86.33 0.44 1.58 16 21 N -0.51 -10.44 4.62 -695.39 -3.21 -13.65 16 22 C 0.08 1.50 4.68 38.21 0.18 1.68 16 23 C -0.11 -1.99 9.97 22.40 0.22 -1.77 16 24 C -0.12 -1.66 10.04 22.25 0.22 -1.44 16 25 C -0.13 -1.67 10.04 22.29 0.22 -1.44 16 26 C -0.12 -1.69 10.04 22.25 0.22 -1.47 16 27 C -0.16 -2.79 8.74 22.40 0.20 -2.59 16 28 C 0.09 1.91 4.45 86.33 0.38 2.29 16 29 H 0.06 2.24 7.75 -2.39 -0.02 2.22 16 30 H 0.04 1.55 6.95 -2.39 -0.02 1.54 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 33 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 34 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 35 H 0.06 2.26 7.93 -2.39 -0.02 2.25 16 36 H 0.02 0.82 7.12 -2.39 -0.02 0.80 16 37 H 0.06 1.81 6.37 -2.39 -0.02 1.79 16 38 H 0.08 1.74 6.28 -2.39 -0.01 1.73 16 39 H 0.03 0.74 6.41 -2.39 -0.02 0.72 16 40 H 0.05 1.39 7.03 -2.39 -0.02 1.38 16 41 H 0.07 1.46 6.29 -2.39 -0.02 1.44 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.35 8.11 -2.39 -0.02 1.34 16 45 H 0.04 0.68 7.15 -2.39 -0.02 0.66 16 46 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 47 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 48 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 49 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 50 H 0.12 1.96 7.13 -2.91 -0.02 1.94 16 51 H 0.04 0.88 6.08 -2.38 -0.01 0.86 16 52 H 0.07 1.77 8.11 -2.39 -0.02 1.75 16 Total: -1.00 -64.53 392.06 1.59 -62.94 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.87 Total: 15.84 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 5.36 Total: -35.55 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -6.67 Total: -90.24 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -64.53 1.59 -62.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475322.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.771 kcal (2) G-P(sol) polarization free energy of solvation -64.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds