Wall clock time and date at job start Tue Mar 31 2020 11:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47791 * 2 1 4 4 C 1.53005 * 109.46909 * 120.00369 * 2 1 3 5 5 C 1.50695 * 109.46869 * 294.99533 * 4 2 1 6 6 H 1.08000 * 119.99912 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99977 * 180.28088 * 5 4 2 8 8 N 1.31519 * 120.00114 * 359.72131 * 7 5 4 9 9 Si 1.86802 * 120.00102 * 179.72707 * 7 5 4 10 10 H 1.48498 * 109.47267 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47225 * 119.99705 * 9 7 5 12 12 H 1.48497 * 109.47121 * 239.99655 * 9 7 5 13 13 C 1.53011 * 109.46992 * 239.99918 * 2 1 3 14 14 N 1.46903 * 109.46766 * 175.08450 * 13 2 1 15 15 C 1.46901 * 110.99921 * 288.14045 * 14 13 2 16 16 C 1.46895 * 110.99651 * 164.18638 * 14 13 2 17 17 H 1.08998 * 109.50522 * 59.92129 * 16 14 13 18 18 C 1.53121 * 109.50826 * 299.80272 * 16 14 13 19 19 C 1.53115 * 109.16367 * 182.40221 * 18 16 14 20 20 C 1.53042 * 109.27483 * 57.65647 * 19 18 16 21 21 N 1.46849 * 109.52270 * 300.81537 * 20 19 18 22 22 C 1.39675 * 110.99909 * 185.84091 * 21 20 19 23 23 C 1.38906 * 120.07342 * 235.51421 * 22 21 20 24 24 C 1.38111 * 119.92243 * 179.77038 * 23 22 21 25 25 C 1.38279 * 120.07485 * 0.50597 * 24 23 22 26 26 C 1.38283 * 120.14892 * 359.75051 * 25 24 23 27 27 C 1.38106 * 120.07602 * 359.97438 * 26 25 24 28 28 C 1.46846 * 111.19437 * 61.74607 * 21 20 19 29 29 H 1.08997 * 109.47074 * 56.35325 * 1 2 3 30 30 H 1.09002 * 109.47255 * 176.34809 * 1 2 3 31 31 H 1.09003 * 109.47181 * 296.34913 * 1 2 3 32 32 H 1.09002 * 109.46722 * 174.99737 * 4 2 1 33 33 H 1.08994 * 109.47436 * 54.99991 * 4 2 1 34 34 H 0.96993 * 119.99984 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46758 * 295.08140 * 13 2 1 36 36 H 1.08997 * 109.46610 * 55.08399 * 13 2 1 37 37 H 1.08997 * 109.47017 * 53.84634 * 15 14 13 38 38 H 1.09000 * 109.46954 * 173.84828 * 15 14 13 39 39 H 1.08998 * 109.46863 * 293.84269 * 15 14 13 40 40 H 1.08997 * 109.51891 * 302.31158 * 18 16 14 41 41 H 1.09004 * 109.51995 * 62.49776 * 18 16 14 42 42 H 1.08996 * 109.50780 * 297.71692 * 19 18 16 43 43 H 1.08998 * 109.50090 * 177.59036 * 19 18 16 44 44 H 1.08998 * 109.46043 * 180.80261 * 20 19 18 45 45 H 1.08995 * 109.45519 * 60.83138 * 20 19 18 46 46 H 1.08003 * 120.04253 * 0.02562 * 23 22 21 47 47 H 1.08006 * 119.96024 * 180.25829 * 24 23 22 48 48 H 1.07999 * 119.93013 * 179.72012 * 25 24 23 49 49 H 1.08002 * 119.96592 * 179.97438 * 26 25 24 50 50 H 1.08006 * 120.03508 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.46129 * 178.24128 * 28 21 20 52 52 H 1.08997 * 109.45589 * 58.26849 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6413 0.0569 2.4765 6 1 1.0800 0.9741 2.3756 7 6 1.9977 -0.3991 3.7279 8 7 2.6808 -1.5162 3.8509 9 14 1.5101 0.5697 5.2489 10 1 0.7526 1.7806 4.8428 11 1 0.6593 -0.2768 6.1233 12 1 2.7314 0.9757 5.9897 13 6 2.0399 -0.7213 -1.2493 14 7 3.5042 -0.6194 -1.3101 15 6 3.9231 0.7471 -1.6498 16 6 4.0606 -1.5921 -2.2599 17 1 3.6547 -1.4035 -3.2537 18 6 3.6896 -3.0098 -1.8160 19 6 4.3234 -4.0194 -2.7770 20 6 5.8397 -3.8134 -2.7983 21 7 6.1428 -2.4429 -3.2299 22 6 7.5186 -2.2604 -3.3872 23 6 8.1682 -1.2406 -2.7034 24 6 9.5295 -1.0660 -2.8576 25 6 10.2440 -1.8983 -3.6996 26 6 9.5995 -2.9111 -4.3859 27 6 8.2394 -3.0949 -4.2320 28 6 5.5845 -1.4566 -2.2962 29 1 -0.3633 0.5694 -0.8555 30 1 -0.3634 -1.0256 -0.0655 31 1 -0.3634 0.4561 0.9209 32 1 3.1262 -0.7996 1.2055 33 1 1.6053 -1.7199 1.2951 34 1 2.9312 -1.8372 4.7312 35 1 1.7503 -1.7713 -1.2063 36 1 1.6064 -0.2608 -2.1370 37 1 3.4657 1.4508 -0.9544 38 1 5.0083 0.8219 -1.5814 39 1 3.6061 0.9822 -2.6658 40 1 4.0618 -3.1845 -0.8066 41 1 2.6057 -3.1241 -1.8304 42 1 3.9217 -3.8696 -3.7792 43 1 4.0983 -5.0318 -2.4416 44 1 6.2926 -4.5213 -3.4924 45 1 6.2423 -3.9769 -1.7987 46 1 7.6102 -0.5876 -2.0487 47 1 10.0359 -0.2759 -2.3230 48 1 11.3076 -1.7567 -3.8219 49 1 10.1603 -3.5592 -5.0431 50 1 7.7366 -3.8859 -4.7686 51 1 5.8520 -0.4525 -2.6257 52 1 5.9885 -1.6312 -1.2991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602475323.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:04 Heat of formation + Delta-G solvation = 29.088668 kcal Electronic energy + Delta-G solvation = -27225.100003 eV Core-core repulsion = 23802.993419 eV Total energy + Delta-G solvation = -3422.106584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.53927 -38.60106 -36.86838 -34.42416 -33.21632 -32.05403 -31.22932 -29.53800 -29.10146 -27.22381 -26.63968 -24.64215 -24.33226 -23.02939 -22.24982 -21.49671 -20.85124 -19.51527 -18.78078 -17.80623 -16.33374 -15.99558 -15.68552 -15.15627 -14.95433 -14.69596 -14.51878 -14.38966 -14.15449 -13.80168 -13.63705 -13.57842 -13.05857 -12.89357 -12.79354 -12.51433 -12.41366 -11.94897 -11.68383 -11.58946 -11.42689 -11.31683 -11.26918 -11.11211 -10.92073 -10.83680 -10.74768 -10.48057 -10.28786 -10.15443 -10.09227 -9.74348 -9.55671 -9.04645 -9.03729 -8.82356 -8.23442 -7.90399 -7.80783 -5.88119 -3.88105 1.28433 1.29824 3.35697 3.43471 3.45663 3.46904 3.76009 4.31559 4.54355 4.69914 4.71068 4.84802 4.94582 4.97795 5.02817 5.15904 5.31128 5.32355 5.41045 5.45710 5.47599 5.49416 5.54928 5.65695 5.67620 5.76004 5.79476 5.83395 5.84520 5.92017 6.00600 6.04807 6.07020 6.20128 6.21117 6.26643 6.30787 6.31115 6.43434 6.45002 6.48161 6.59292 6.68573 6.90378 7.00888 7.07554 7.22292 7.32737 7.51922 7.56193 7.86932 8.08708 8.21923 8.58663 9.20051 9.74028 11.22975 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.003020 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.400005 B = 9269.233995 C = 9933.095006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.055 0.945 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.052 0.948 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.062 3.938 14 N -0.524 5.524 15 C 0.024 3.976 16 C 0.092 3.908 17 H 0.042 0.958 18 C -0.119 4.119 19 C -0.116 4.116 20 C 0.059 3.941 21 N -0.490 5.490 22 C 0.119 3.881 23 C -0.171 4.171 24 C -0.093 4.093 25 C -0.153 4.153 26 C -0.098 4.098 27 C -0.145 4.145 28 C 0.057 3.943 29 H 0.027 0.973 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.008 0.992 34 H 0.256 0.744 35 H 0.072 0.928 36 H 0.017 0.983 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.129 0.871 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.123 0.877 51 H 0.081 0.919 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.217 -3.341 -17.931 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.074 0.926 4 C 0.000 4.000 5 C -0.550 4.550 6 H 0.070 0.930 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.712 3.288 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.065 4.065 14 N -0.248 5.248 15 C -0.125 4.125 16 C -0.017 4.017 17 H 0.059 0.941 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.067 4.067 21 N -0.205 5.205 22 C 0.021 3.979 23 C -0.192 4.192 24 C -0.111 4.111 25 C -0.172 4.172 26 C -0.116 4.116 27 C -0.165 4.165 28 C -0.070 4.070 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.036 0.964 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.146 0.854 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.099 0.901 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.150 -3.516 -17.770 20.764 hybrid contribution -0.215 0.691 0.812 1.087 sum 9.935 -2.825 -16.958 19.856 Atomic orbital electron populations 1.21721 0.96546 1.00418 1.00503 1.21227 0.94096 0.99259 0.95628 0.92648 1.19021 0.97334 0.94414 0.89211 1.21363 1.34024 1.08187 0.91432 0.92995 1.24983 0.95521 0.95092 0.98841 1.69983 1.39273 1.21277 1.22927 0.86675 0.78176 0.80206 0.83743 1.19924 1.21242 1.21211 1.22342 0.85576 1.01195 0.97423 1.61883 1.10834 1.03896 1.48200 1.22431 1.00806 0.90687 0.98528 1.21520 0.93159 0.93084 0.93932 0.94054 1.21741 1.01080 0.92893 0.99996 1.21614 0.93809 0.99524 1.00473 1.22257 0.97294 0.87492 0.99616 1.58957 1.09168 1.05189 1.47190 1.18996 0.87746 0.95775 0.95369 1.21416 0.95125 1.01199 1.01447 1.21028 0.93797 0.98688 0.97628 1.21039 0.99800 0.97058 0.99342 1.20978 0.94114 0.97630 0.98908 1.20769 0.94132 1.01179 1.00428 1.22341 0.94888 0.95188 0.94534 0.95368 0.93810 0.91621 0.94948 0.97388 0.93382 0.90936 0.96433 0.90570 0.91949 0.96467 0.90358 0.91109 0.91305 0.90769 0.90308 0.93472 0.85350 0.86122 0.86424 0.86160 0.85943 0.90054 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 9.06 37.15 0.34 -2.18 16 2 C -0.08 -1.69 2.35 -90.61 -0.21 -1.90 16 3 H 0.06 1.15 6.49 -51.93 -0.34 0.81 16 4 C 0.04 0.95 4.39 -27.88 -0.12 0.83 16 5 C -0.51 -14.34 8.36 -34.44 -0.29 -14.63 16 6 H 0.05 1.43 7.07 -52.49 -0.37 1.06 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.88 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.06 1.06 4.22 -3.82 -0.02 1.05 16 14 N -0.52 -8.62 3.96 -234.79 -0.93 -9.55 16 15 C 0.02 0.35 8.89 60.07 0.53 0.88 16 16 C 0.09 1.30 2.10 -67.63 -0.14 1.16 16 17 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 18 C -0.12 -1.64 5.04 -26.61 -0.13 -1.78 16 19 C -0.12 -1.28 6.09 -26.65 -0.16 -1.44 16 20 C 0.06 0.66 5.26 -3.83 -0.02 0.64 16 21 N -0.49 -6.03 4.70 -171.15 -0.80 -6.84 16 22 C 0.12 1.44 5.64 -83.79 -0.47 0.97 16 23 C -0.17 -2.03 8.82 -39.38 -0.35 -2.38 16 24 C -0.09 -0.97 10.04 -39.61 -0.40 -1.37 16 25 C -0.15 -1.47 10.04 -39.55 -0.40 -1.87 16 26 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 27 C -0.14 -1.54 9.16 -39.38 -0.36 -1.90 16 28 C 0.06 0.76 3.04 -3.83 -0.01 0.75 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.34 6.85 -51.93 -0.36 0.98 16 32 H 0.03 0.90 7.62 -51.93 -0.40 0.50 16 33 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 1.25 5.69 -51.93 -0.30 0.95 16 36 H 0.02 0.28 8.05 -51.93 -0.42 -0.14 16 37 H 0.08 1.21 6.41 -51.93 -0.33 0.87 16 38 H 0.06 0.84 6.39 -51.93 -0.33 0.51 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 0.99 6.24 -51.93 -0.32 0.66 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.76 6.70 -51.93 -0.35 0.41 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.13 1.51 5.81 -52.48 -0.30 1.21 16 47 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 50 H 0.12 1.14 7.15 -52.48 -0.38 0.77 16 51 H 0.08 1.05 5.27 -51.93 -0.27 0.78 16 52 H 0.06 0.88 7.75 -51.93 -0.40 0.48 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -30.42 390.05 -11.92 -42.34 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -9.07 Total: 0.61 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -2.71 Total: -22.99 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -1.00 Total: -42.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.42 -11.92 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475323.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.429 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds