Wall clock time and date at job start Tue Mar 31 2020 11:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47791 * 2 1 4 4 C 1.53005 * 109.46909 * 120.00369 * 2 1 3 5 5 C 1.50695 * 109.46869 * 294.99533 * 4 2 1 6 6 H 1.08000 * 119.99912 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99977 * 180.28088 * 5 4 2 8 8 N 1.31519 * 120.00114 * 359.72131 * 7 5 4 9 9 Si 1.86802 * 120.00102 * 179.72707 * 7 5 4 10 10 H 1.48498 * 109.47267 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47225 * 119.99705 * 9 7 5 12 12 H 1.48497 * 109.47121 * 239.99655 * 9 7 5 13 13 C 1.53011 * 109.46992 * 239.99918 * 2 1 3 14 14 N 1.46903 * 109.46766 * 175.08450 * 13 2 1 15 15 C 1.46901 * 110.99921 * 288.14045 * 14 13 2 16 16 C 1.46895 * 110.99651 * 164.18638 * 14 13 2 17 17 H 1.08998 * 109.50522 * 59.92129 * 16 14 13 18 18 C 1.53121 * 109.50826 * 299.80272 * 16 14 13 19 19 C 1.53115 * 109.16367 * 182.40221 * 18 16 14 20 20 C 1.53042 * 109.27483 * 57.65647 * 19 18 16 21 21 N 1.46849 * 109.52270 * 300.81537 * 20 19 18 22 22 C 1.39675 * 110.99909 * 185.84091 * 21 20 19 23 23 C 1.38906 * 120.07342 * 235.51421 * 22 21 20 24 24 C 1.38111 * 119.92243 * 179.77038 * 23 22 21 25 25 C 1.38279 * 120.07485 * 0.50597 * 24 23 22 26 26 C 1.38283 * 120.14892 * 359.75051 * 25 24 23 27 27 C 1.38106 * 120.07602 * 359.97438 * 26 25 24 28 28 C 1.46846 * 111.19437 * 61.74607 * 21 20 19 29 29 H 1.08997 * 109.47074 * 56.35325 * 1 2 3 30 30 H 1.09002 * 109.47255 * 176.34809 * 1 2 3 31 31 H 1.09003 * 109.47181 * 296.34913 * 1 2 3 32 32 H 1.09002 * 109.46722 * 174.99737 * 4 2 1 33 33 H 1.08994 * 109.47436 * 54.99991 * 4 2 1 34 34 H 0.96993 * 119.99984 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.46758 * 295.08140 * 13 2 1 36 36 H 1.08997 * 109.46610 * 55.08399 * 13 2 1 37 37 H 1.08997 * 109.47017 * 53.84634 * 15 14 13 38 38 H 1.09000 * 109.46954 * 173.84828 * 15 14 13 39 39 H 1.08998 * 109.46863 * 293.84269 * 15 14 13 40 40 H 1.08997 * 109.51891 * 302.31158 * 18 16 14 41 41 H 1.09004 * 109.51995 * 62.49776 * 18 16 14 42 42 H 1.08996 * 109.50780 * 297.71692 * 19 18 16 43 43 H 1.08998 * 109.50090 * 177.59036 * 19 18 16 44 44 H 1.08998 * 109.46043 * 180.80261 * 20 19 18 45 45 H 1.08995 * 109.45519 * 60.83138 * 20 19 18 46 46 H 1.08003 * 120.04253 * 0.02562 * 23 22 21 47 47 H 1.08006 * 119.96024 * 180.25829 * 24 23 22 48 48 H 1.07999 * 119.93013 * 179.72012 * 25 24 23 49 49 H 1.08002 * 119.96592 * 179.97438 * 26 25 24 50 50 H 1.08006 * 120.03508 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.46129 * 178.24128 * 28 21 20 52 52 H 1.08997 * 109.45589 * 58.26849 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 1.6413 0.0569 2.4765 6 1 1.0800 0.9741 2.3756 7 6 1.9977 -0.3991 3.7279 8 7 2.6808 -1.5162 3.8509 9 14 1.5101 0.5697 5.2489 10 1 0.7526 1.7806 4.8428 11 1 0.6593 -0.2768 6.1233 12 1 2.7314 0.9757 5.9897 13 6 2.0399 -0.7213 -1.2493 14 7 3.5042 -0.6194 -1.3101 15 6 3.9231 0.7471 -1.6498 16 6 4.0606 -1.5921 -2.2599 17 1 3.6547 -1.4035 -3.2537 18 6 3.6896 -3.0098 -1.8160 19 6 4.3234 -4.0194 -2.7770 20 6 5.8397 -3.8134 -2.7983 21 7 6.1428 -2.4429 -3.2299 22 6 7.5186 -2.2604 -3.3872 23 6 8.1682 -1.2406 -2.7034 24 6 9.5295 -1.0660 -2.8576 25 6 10.2440 -1.8983 -3.6996 26 6 9.5995 -2.9111 -4.3859 27 6 8.2394 -3.0949 -4.2320 28 6 5.5845 -1.4566 -2.2962 29 1 -0.3633 0.5694 -0.8555 30 1 -0.3634 -1.0256 -0.0655 31 1 -0.3634 0.4561 0.9209 32 1 3.1262 -0.7996 1.2055 33 1 1.6053 -1.7199 1.2951 34 1 2.9312 -1.8372 4.7312 35 1 1.7503 -1.7713 -1.2063 36 1 1.6064 -0.2608 -2.1370 37 1 3.4657 1.4508 -0.9544 38 1 5.0083 0.8219 -1.5814 39 1 3.6061 0.9822 -2.6658 40 1 4.0618 -3.1845 -0.8066 41 1 2.6057 -3.1241 -1.8304 42 1 3.9217 -3.8696 -3.7792 43 1 4.0983 -5.0318 -2.4416 44 1 6.2926 -4.5213 -3.4924 45 1 6.2423 -3.9769 -1.7987 46 1 7.6102 -0.5876 -2.0487 47 1 10.0359 -0.2759 -2.3230 48 1 11.3076 -1.7567 -3.8219 49 1 10.1603 -3.5592 -5.0431 50 1 7.7366 -3.8859 -4.7686 51 1 5.8520 -0.4525 -2.6257 52 1 5.9885 -1.6312 -1.2991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602475323.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:03 Heat of formation + Delta-G solvation = 12.971531 kcal Electronic energy + Delta-G solvation = -27225.798894 eV Core-core repulsion = 23802.993419 eV Total energy + Delta-G solvation = -3422.805476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49117 -39.67927 -38.04670 -36.01741 -34.36882 -33.92854 -32.11327 -30.61302 -30.01791 -29.06939 -28.06024 -25.95831 -25.37166 -24.70948 -23.44151 -22.39717 -21.85058 -20.63430 -20.41412 -18.71151 -18.45602 -17.00351 -16.68155 -16.58628 -16.07234 -15.98851 -15.86991 -15.58951 -15.25411 -15.03756 -14.75117 -14.42509 -14.39134 -14.22751 -14.01996 -13.73508 -13.71584 -13.39530 -13.32383 -12.86918 -12.77509 -12.64073 -12.58599 -12.43944 -12.27793 -12.20473 -11.98792 -11.94620 -11.80764 -11.52413 -11.43083 -11.16780 -10.89082 -10.85155 -10.63983 -10.46164 -9.84657 -9.08660 -8.80141 -8.10600 -6.18460 0.46572 0.49877 1.39197 1.39918 1.52118 2.44696 2.50336 2.88409 3.20096 3.22436 3.64111 3.77914 3.94547 4.01821 4.07677 4.10995 4.18947 4.28897 4.32104 4.34201 4.43573 4.46772 4.53618 4.54290 4.57963 4.59505 4.67852 4.70524 4.77288 4.80423 4.82563 4.88274 4.94860 4.97285 5.04691 5.09248 5.15809 5.16180 5.32129 5.34637 5.37862 5.47453 5.53005 5.53281 5.66761 5.68887 5.87733 5.94203 5.98628 6.04845 6.25062 6.31688 6.36049 6.40460 7.00426 7.48454 9.00874 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.003020 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.400005 B = 9269.233995 C = 9933.095006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.077 4.077 3 H 0.051 0.949 4 C 0.051 3.949 5 C -0.526 4.526 6 H 0.055 0.945 7 C -0.002 4.002 8 N -0.933 5.933 9 Si 0.954 3.046 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.072 3.928 14 N -0.550 5.550 15 C 0.027 3.973 16 C 0.098 3.902 17 H 0.049 0.951 18 C -0.118 4.118 19 C -0.107 4.107 20 C 0.058 3.942 21 N -0.489 5.489 22 C 0.097 3.903 23 C -0.191 4.191 24 C -0.103 4.103 25 C -0.154 4.154 26 C -0.098 4.098 27 C -0.150 4.150 28 C 0.069 3.931 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.000 1.000 33 H -0.023 1.023 34 H 0.258 0.742 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.030 0.970 46 H 0.118 0.882 47 H 0.134 0.866 48 H 0.143 0.857 49 H 0.149 0.851 50 H 0.137 0.863 51 H 0.083 0.917 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.591 -3.075 -19.785 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.096 4.096 3 H 0.070 0.930 4 C 0.014 3.986 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.199 4.199 8 N -0.574 5.574 9 Si 0.779 3.221 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.208 1.208 13 C -0.056 4.056 14 N -0.275 5.275 15 C -0.121 4.121 16 C -0.011 4.011 17 H 0.067 0.933 18 C -0.155 4.155 19 C -0.145 4.145 20 C -0.067 4.067 21 N -0.204 5.204 22 C 0.000 4.000 23 C -0.212 4.212 24 C -0.122 4.122 25 C -0.173 4.173 26 C -0.116 4.116 27 C -0.170 4.170 28 C -0.058 4.058 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.018 0.982 33 H -0.004 1.004 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.048 0.952 46 H 0.136 0.864 47 H 0.152 0.848 48 H 0.160 0.840 49 H 0.167 0.833 50 H 0.154 0.846 51 H 0.102 0.898 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.527 -3.239 -19.638 22.516 hybrid contribution -0.240 0.592 1.381 1.521 sum 10.287 -2.647 -18.257 21.122 Atomic orbital electron populations 1.21642 0.95060 1.00957 1.00991 1.21082 0.95338 0.98538 0.94623 0.93038 1.18791 0.95096 0.93243 0.91459 1.21768 1.33679 1.08382 0.92562 0.92631 1.25880 0.95520 0.96108 1.02350 1.70127 1.40525 1.23006 1.23764 0.85568 0.77954 0.79002 0.79536 1.18705 1.20670 1.20813 1.22138 0.86272 1.00640 0.96520 1.61813 1.10558 1.05231 1.49889 1.22398 1.01169 0.89509 0.99041 1.21498 0.93514 0.92525 0.93528 0.93286 1.21705 1.00960 0.93851 0.99034 1.21575 0.93431 0.99305 1.00167 1.22318 0.97437 0.87621 0.99306 1.59049 1.09698 1.05190 1.46444 1.19190 0.87729 0.96650 0.96475 1.21491 0.96042 1.01607 1.02064 1.21279 0.93345 0.99449 0.98077 1.21397 1.01060 0.96427 0.98382 1.21355 0.93826 0.97675 0.98742 1.21005 0.94773 1.01132 1.00064 1.22137 0.94224 0.95878 0.93562 0.91916 0.93662 0.93607 0.98154 1.00421 0.93294 0.91351 0.94113 0.91990 0.91279 0.94640 0.93667 0.91414 0.90053 0.89303 0.88059 0.95203 0.86419 0.84792 0.83968 0.83344 0.84556 0.89831 0.94898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.06 71.98 0.65 -4.08 16 2 C -0.08 -3.15 2.35 -10.79 -0.03 -3.17 16 3 H 0.05 2.14 6.49 -2.39 -0.02 2.13 16 4 C 0.05 2.72 4.39 29.85 0.13 2.86 16 5 C -0.53 -30.18 8.36 25.60 0.21 -29.97 16 6 H 0.06 3.08 7.07 -2.91 -0.02 3.06 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 8 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 9 Si 0.95 45.44 29.54 68.60 2.03 47.47 16 10 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 C 0.07 2.45 4.22 86.31 0.36 2.81 16 14 N -0.55 -18.50 3.96 -896.73 -3.55 -22.05 16 15 C 0.03 0.79 8.89 127.69 1.13 1.92 16 16 C 0.10 2.80 2.10 44.97 0.09 2.90 16 17 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 18 C -0.12 -3.34 5.04 30.67 0.15 -3.19 16 19 C -0.11 -2.27 6.09 30.65 0.19 -2.08 16 20 C 0.06 1.28 5.26 86.33 0.45 1.73 16 21 N -0.49 -11.92 4.70 -695.40 -3.27 -15.19 16 22 C 0.10 2.31 5.64 38.21 0.22 2.53 16 23 C -0.19 -4.62 8.82 22.40 0.20 -4.42 16 24 C -0.10 -2.08 10.04 22.25 0.22 -1.86 16 25 C -0.15 -2.62 10.04 22.29 0.22 -2.40 16 26 C -0.10 -1.61 10.04 22.25 0.22 -1.38 16 27 C -0.15 -2.92 9.16 22.40 0.21 -2.72 16 28 C 0.07 1.91 3.04 86.33 0.26 2.17 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.84 6.85 -2.39 -0.02 1.82 16 32 H 0.00 0.00 7.62 -2.39 -0.02 -0.02 16 33 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.07 2.38 5.69 -2.39 -0.01 2.37 16 36 H 0.04 1.22 8.05 -2.39 -0.02 1.20 16 37 H 0.06 1.98 6.41 -2.39 -0.02 1.97 16 38 H 0.07 1.91 6.39 -2.39 -0.02 1.89 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.93 6.24 -2.38 -0.01 1.92 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.10 1.77 6.70 -2.39 -0.02 1.75 16 45 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.12 2.97 5.81 -2.91 -0.02 2.95 16 47 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 48 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 49 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 50 H 0.14 2.20 7.15 -2.91 -0.02 2.18 16 51 H 0.08 2.22 5.27 -2.38 -0.01 2.21 16 52 H 0.03 1.06 7.75 -2.39 -0.02 1.04 16 Total: -1.00 -67.42 390.05 1.74 -65.67 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.87 Total: 19.99 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 5.37 Total: -37.99 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -6.53 Total: -95.14 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -67.42 1.74 -65.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602475323.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.646 kcal (2) G-P(sol) polarization free energy of solvation -67.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds