Wall clock time and date at job start Tue Mar 31 2020 11:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46950 * 2 1 4 4 C 1.52999 * 109.47052 * 240.00540 * 2 1 3 5 5 C 1.50693 * 109.47420 * 64.99796 * 4 2 1 6 6 H 1.08004 * 120.00050 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00506 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99566 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00705 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47175 * 89.99830 * 9 7 5 11 11 H 1.48499 * 109.47135 * 210.00316 * 9 7 5 12 12 H 1.48505 * 109.46712 * 329.99655 * 9 7 5 13 13 C 1.52999 * 109.47256 * 120.00162 * 2 1 3 14 14 N 1.46901 * 109.46956 * 185.14286 * 13 2 1 15 15 C 1.48535 * 111.00043 * 58.43915 * 14 13 2 16 16 C 1.54936 * 103.22782 * 159.71666 * 15 14 13 17 17 C 1.54598 * 102.92146 * 322.58970 * 16 15 14 18 18 H 1.09002 * 110.30402 * 263.03848 * 17 16 15 19 19 N 1.46899 * 110.39234 * 140.91446 * 17 16 15 20 20 C 1.46906 * 110.99822 * 188.18444 * 19 17 16 21 21 C 1.46902 * 111.00169 * 64.23476 * 19 17 16 22 22 C 1.50701 * 109.47368 * 189.99871 * 21 19 17 23 23 C 1.38234 * 119.99871 * 269.73066 * 22 21 19 24 24 C 1.38238 * 119.99787 * 179.78853 * 23 22 21 25 25 C 1.38230 * 119.99893 * 0.43382 * 24 23 22 26 26 C 1.38240 * 120.00098 * 359.81525 * 25 24 23 27 27 C 1.38230 * 120.00137 * 359.97438 * 26 25 24 28 28 C 1.47901 * 110.99697 * 175.83159 * 14 13 2 29 29 H 1.09000 * 109.47207 * 54.94688 * 1 2 3 30 30 H 1.08993 * 109.47165 * 174.95322 * 1 2 3 31 31 H 1.09000 * 109.47037 * 294.95132 * 1 2 3 32 32 H 1.08999 * 109.46673 * 304.99356 * 4 2 1 33 33 H 1.08999 * 109.47118 * 185.00168 * 4 2 1 34 34 H 0.96997 * 120.00086 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47216 * 305.14170 * 13 2 1 36 36 H 1.08998 * 109.47042 * 65.14080 * 13 2 1 37 37 H 1.08996 * 110.66619 * 278.15239 * 15 14 13 38 38 H 1.08998 * 110.66426 * 41.28628 * 15 14 13 39 39 H 1.08996 * 110.72889 * 204.23144 * 16 15 14 40 40 H 1.09000 * 110.72200 * 80.93964 * 16 15 14 41 41 H 1.09001 * 109.46940 * 59.99798 * 20 19 17 42 42 H 1.09001 * 109.47227 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.47105 * 300.00319 * 20 19 17 44 44 H 1.09005 * 109.46822 * 310.00090 * 21 19 17 45 45 H 1.09004 * 109.47180 * 69.99819 * 21 19 17 46 46 H 1.07998 * 120.00055 * 359.97438 * 23 22 21 47 47 H 1.08000 * 119.99445 * 180.27119 * 24 23 22 48 48 H 1.08000 * 120.00024 * 179.83827 * 25 24 23 49 49 H 1.07997 * 119.99764 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00393 * 179.97438 * 27 26 25 51 51 H 1.08996 * 109.92021 * 333.51483 * 28 14 13 52 52 H 1.09006 * 109.91688 * 94.60471 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9922 -0.4020 -3.7284 8 7 2.6746 -1.5196 -3.8513 9 14 1.4987 0.5631 -5.2496 10 1 2.5647 1.5419 -5.5824 11 1 1.3108 -0.3707 -6.3889 12 1 0.2280 1.2853 -4.9869 13 6 2.0400 -0.7213 1.2492 14 7 3.5038 -0.6146 1.3128 15 6 3.9334 0.8070 1.3375 16 6 5.3662 0.7343 1.9223 17 6 5.2501 -0.3837 2.9838 18 1 5.0907 0.0480 3.9719 19 7 6.4586 -1.2188 2.9820 20 6 6.2861 -2.3961 3.8435 21 6 7.6373 -0.4400 3.3846 22 6 8.8834 -1.2507 3.1375 23 6 9.3813 -2.0731 4.1308 24 6 10.5219 -2.8200 3.9026 25 6 11.1696 -2.7377 2.6842 26 6 10.6747 -1.9113 1.6927 27 6 9.5317 -1.1677 1.9193 28 6 4.0252 -1.2150 2.5599 29 1 -0.3633 0.5902 -0.8413 30 1 -0.3633 -1.0236 -0.0904 31 1 -0.3633 0.4335 0.9317 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7994 -1.2057 34 1 2.9219 -1.8425 -4.7319 35 1 1.6034 -0.2634 2.1368 36 1 1.7538 -1.7720 1.2043 37 1 3.9498 1.2214 0.3295 38 1 3.2827 1.3943 1.9855 39 1 5.6415 1.6808 2.3876 40 1 6.0846 0.4595 1.1500 41 1 5.4488 -2.9923 3.4808 42 1 7.1955 -2.9968 3.8243 43 1 6.0863 -2.0727 4.8651 44 1 7.6810 0.4803 2.8021 45 1 7.5669 -0.1960 4.4447 46 1 8.8774 -2.1343 5.0841 47 1 10.9083 -3.4658 4.6771 48 1 12.0622 -3.3192 2.5068 49 1 11.1805 -1.8473 0.7407 50 1 9.1452 -0.5218 1.1449 51 1 3.2627 -1.1762 3.3378 52 1 4.3189 -2.2492 2.3796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602477200.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:41 Heat of formation + Delta-G solvation = 29.618695 kcal Electronic energy + Delta-G solvation = -26639.414187 eV Core-core repulsion = 23217.330587 eV Total energy + Delta-G solvation = -3422.083600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.89175 -38.97146 -36.75780 -34.64948 -32.31534 -31.65513 -31.05286 -30.30032 -28.13964 -27.19153 -26.85855 -25.10461 -23.57003 -22.76871 -22.63694 -21.35026 -20.80966 -19.80180 -18.59854 -16.93579 -16.58433 -16.26557 -15.77189 -15.44710 -15.29911 -14.57105 -14.48765 -14.17863 -14.14722 -13.82909 -13.54686 -13.15771 -12.93443 -12.75225 -12.65685 -12.51479 -12.14021 -12.07825 -11.88636 -11.59628 -11.39786 -11.31346 -11.14042 -10.95628 -10.93648 -10.83042 -10.78261 -10.75522 -10.64017 -10.27381 -10.06987 -9.58802 -9.02784 -9.01886 -8.91585 -8.78889 -8.35791 -8.19749 -7.82734 -5.84092 -3.84939 1.19619 1.28874 3.39118 3.45439 3.48012 3.52592 4.03067 4.38366 4.56293 4.57584 4.68856 4.71294 4.87543 4.93380 4.97768 5.11151 5.22061 5.24769 5.36580 5.38893 5.50401 5.50878 5.52590 5.53296 5.62060 5.70576 5.76366 5.83944 5.88245 5.88689 5.93251 5.95470 6.10677 6.11201 6.27324 6.31417 6.32365 6.38980 6.39523 6.48657 6.50511 6.52927 6.86616 6.96417 7.01115 7.06078 7.09726 7.33189 7.38988 7.60351 7.89823 8.10978 8.25525 8.61107 9.23163 9.77055 11.26860 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014238 B = 0.002821 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.137622 B = 9923.140832 C =11231.256567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 H 0.056 0.944 4 C 0.035 3.965 5 C -0.514 4.514 6 H 0.051 0.949 7 C 0.056 3.944 8 N -0.893 5.893 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.056 3.944 14 N -0.496 5.496 15 C 0.040 3.960 16 C -0.116 4.116 17 C 0.077 3.923 18 H 0.041 0.959 19 N -0.521 5.521 20 C 0.016 3.984 21 C 0.092 3.908 22 C -0.074 4.074 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.095 4.095 28 C 0.041 3.959 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.027 0.973 32 H 0.010 0.990 33 H 0.033 0.967 34 H 0.257 0.743 35 H 0.016 0.984 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.020 0.980 44 H 0.086 0.914 45 H 0.038 0.962 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.125 0.875 51 H 0.036 0.964 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.086 0.483 19.359 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.105 4.105 3 H 0.074 0.926 4 C -0.002 4.002 5 C -0.552 4.552 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.072 4.072 14 N -0.220 5.220 15 C -0.088 4.088 16 C -0.155 4.155 17 C -0.032 4.032 18 H 0.059 0.941 19 N -0.245 5.245 20 C -0.131 4.131 21 C -0.035 4.035 22 C -0.075 4.075 23 C -0.135 4.135 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.114 4.114 28 C -0.087 4.087 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.039 0.961 44 H 0.104 0.896 45 H 0.057 0.943 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.140 0.860 50 H 0.143 0.857 51 H 0.054 0.946 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.400 -0.076 18.296 22.678 hybrid contribution -0.769 1.034 0.635 1.437 sum 12.631 0.958 18.931 22.778 Atomic orbital electron populations 1.21694 0.96461 1.01229 0.99548 1.21268 0.94392 0.99178 0.95658 0.92591 1.19055 0.97438 0.94527 0.89154 1.21304 1.34367 1.08135 0.91400 0.93074 1.24992 0.95538 0.95059 0.98830 1.69985 1.39141 1.21086 1.23056 0.86725 0.78783 0.79899 0.83330 1.20850 1.21419 1.20118 1.22444 0.86369 1.01027 0.97352 1.64772 1.11349 1.12814 1.33028 1.23185 0.93862 0.90239 1.01558 1.22603 0.98478 0.96280 0.98115 1.22517 0.89766 0.93585 0.97314 0.94072 1.62080 1.02072 1.07839 1.52509 1.22541 1.03055 0.93711 0.93838 1.21059 0.87823 0.95868 0.98773 1.19740 0.95823 0.97732 0.94164 1.21030 0.96572 0.96989 0.98861 1.21078 0.96043 0.99728 0.97383 1.21139 1.00060 0.99120 0.93819 1.21190 0.96626 0.96865 0.99157 1.21092 0.94793 0.99086 0.96382 1.22998 0.94187 1.00190 0.91345 0.92025 0.93487 0.95437 0.97200 0.94867 0.93277 0.96550 0.91291 0.88930 0.94592 0.91793 0.89340 0.90711 0.90974 0.96099 0.89594 0.94346 0.86584 0.86362 0.86345 0.86042 0.85718 0.94577 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.92 37.16 0.33 -2.18 16 2 C -0.09 -1.79 2.16 -90.62 -0.20 -1.98 16 3 H 0.06 1.17 6.63 -51.93 -0.34 0.82 16 4 C 0.04 0.92 4.39 -27.89 -0.12 0.80 16 5 C -0.51 -14.60 8.47 -34.44 -0.29 -14.89 16 6 H 0.05 1.42 7.06 -52.48 -0.37 1.04 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 9 Si 0.88 22.07 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.06 1.00 4.22 -3.82 -0.02 0.99 16 14 N -0.50 -8.64 4.73 -230.46 -1.09 -9.73 16 15 C 0.04 0.62 5.34 -1.90 -0.01 0.61 16 16 C -0.12 -1.52 5.44 -24.87 -0.14 -1.65 16 17 C 0.08 0.95 2.72 -66.36 -0.18 0.77 16 18 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 19 N -0.52 -6.24 4.56 -234.68 -1.07 -7.31 16 20 C 0.02 0.18 8.88 60.07 0.53 0.71 16 21 C 0.09 0.95 5.00 -4.97 -0.02 0.93 16 22 C -0.07 -0.78 4.88 -104.62 -0.51 -1.29 16 23 C -0.12 -1.10 7.92 -39.58 -0.31 -1.42 16 24 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 27 C -0.09 -1.03 9.70 -39.58 -0.38 -1.42 16 28 C 0.04 0.59 5.89 -2.76 -0.02 0.57 16 29 H 0.06 1.25 7.10 -51.93 -0.37 0.88 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.03 0.95 7.62 -51.93 -0.40 0.55 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.02 0.27 7.97 -51.93 -0.41 -0.15 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.64 7.54 -51.93 -0.39 1.25 16 38 H 0.04 0.52 8.01 -51.93 -0.42 0.11 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.27 7.99 -51.93 -0.41 0.86 16 41 H 0.07 0.83 6.08 -51.93 -0.32 0.51 16 42 H 0.07 0.75 5.91 -51.93 -0.31 0.45 16 43 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 44 H 0.09 0.87 6.88 -51.93 -0.36 0.51 16 45 H 0.04 0.36 8.06 -51.93 -0.42 -0.06 16 46 H 0.12 0.94 8.00 -52.49 -0.42 0.52 16 47 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 48 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 49 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 50 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 51 H 0.04 0.48 7.67 -51.93 -0.40 0.08 16 52 H 0.09 1.30 6.04 -51.93 -0.31 0.99 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -31.32 399.10 -12.49 -43.81 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -9.43 Total: -0.55 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -2.63 Total: -22.53 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -1.42 Total: -43.79 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.32 -12.49 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602477200.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.428 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds