Wall clock time and date at job start Tue Mar 31 2020 11:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46950 * 2 1 4 4 C 1.52999 * 109.47052 * 240.00540 * 2 1 3 5 5 C 1.50693 * 109.47420 * 64.99796 * 4 2 1 6 6 H 1.08004 * 120.00050 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00506 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99566 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00705 * 180.02562 * 7 5 4 10 10 H 1.48491 * 109.47175 * 89.99830 * 9 7 5 11 11 H 1.48499 * 109.47135 * 210.00316 * 9 7 5 12 12 H 1.48505 * 109.46712 * 329.99655 * 9 7 5 13 13 C 1.52999 * 109.47256 * 120.00162 * 2 1 3 14 14 N 1.46901 * 109.46956 * 185.14286 * 13 2 1 15 15 C 1.48535 * 111.00043 * 58.43915 * 14 13 2 16 16 C 1.54936 * 103.22782 * 159.71666 * 15 14 13 17 17 C 1.54598 * 102.92146 * 322.58970 * 16 15 14 18 18 H 1.09002 * 110.30402 * 263.03848 * 17 16 15 19 19 N 1.46899 * 110.39234 * 140.91446 * 17 16 15 20 20 C 1.46906 * 110.99822 * 188.18444 * 19 17 16 21 21 C 1.46902 * 111.00169 * 64.23476 * 19 17 16 22 22 C 1.50701 * 109.47368 * 189.99871 * 21 19 17 23 23 C 1.38234 * 119.99871 * 269.73066 * 22 21 19 24 24 C 1.38238 * 119.99787 * 179.78853 * 23 22 21 25 25 C 1.38230 * 119.99893 * 0.43382 * 24 23 22 26 26 C 1.38240 * 120.00098 * 359.81525 * 25 24 23 27 27 C 1.38230 * 120.00137 * 359.97438 * 26 25 24 28 28 C 1.47901 * 110.99697 * 175.83159 * 14 13 2 29 29 H 1.09000 * 109.47207 * 54.94688 * 1 2 3 30 30 H 1.08993 * 109.47165 * 174.95322 * 1 2 3 31 31 H 1.09000 * 109.47037 * 294.95132 * 1 2 3 32 32 H 1.08999 * 109.46673 * 304.99356 * 4 2 1 33 33 H 1.08999 * 109.47118 * 185.00168 * 4 2 1 34 34 H 0.96997 * 120.00086 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47216 * 305.14170 * 13 2 1 36 36 H 1.08998 * 109.47042 * 65.14080 * 13 2 1 37 37 H 1.08996 * 110.66619 * 278.15239 * 15 14 13 38 38 H 1.08998 * 110.66426 * 41.28628 * 15 14 13 39 39 H 1.08996 * 110.72889 * 204.23144 * 16 15 14 40 40 H 1.09000 * 110.72200 * 80.93964 * 16 15 14 41 41 H 1.09001 * 109.46940 * 59.99798 * 20 19 17 42 42 H 1.09001 * 109.47227 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.47105 * 300.00319 * 20 19 17 44 44 H 1.09005 * 109.46822 * 310.00090 * 21 19 17 45 45 H 1.09004 * 109.47180 * 69.99819 * 21 19 17 46 46 H 1.07998 * 120.00055 * 359.97438 * 23 22 21 47 47 H 1.08000 * 119.99445 * 180.27119 * 24 23 22 48 48 H 1.08000 * 120.00024 * 179.83827 * 25 24 23 49 49 H 1.07997 * 119.99764 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00393 * 179.97438 * 27 26 25 51 51 H 1.08996 * 109.92021 * 333.51483 * 28 14 13 52 52 H 1.09006 * 109.91688 * 94.60471 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9922 -0.4020 -3.7284 8 7 2.6746 -1.5196 -3.8513 9 14 1.4987 0.5631 -5.2496 10 1 2.5647 1.5419 -5.5824 11 1 1.3108 -0.3707 -6.3889 12 1 0.2280 1.2853 -4.9869 13 6 2.0400 -0.7213 1.2492 14 7 3.5038 -0.6146 1.3128 15 6 3.9334 0.8070 1.3375 16 6 5.3662 0.7343 1.9223 17 6 5.2501 -0.3837 2.9838 18 1 5.0907 0.0480 3.9719 19 7 6.4586 -1.2188 2.9820 20 6 6.2861 -2.3961 3.8435 21 6 7.6373 -0.4400 3.3846 22 6 8.8834 -1.2507 3.1375 23 6 9.3813 -2.0731 4.1308 24 6 10.5219 -2.8200 3.9026 25 6 11.1696 -2.7377 2.6842 26 6 10.6747 -1.9113 1.6927 27 6 9.5317 -1.1677 1.9193 28 6 4.0252 -1.2150 2.5599 29 1 -0.3633 0.5902 -0.8413 30 1 -0.3633 -1.0236 -0.0904 31 1 -0.3633 0.4335 0.9317 32 1 1.6054 -1.7197 -1.2952 33 1 3.1263 -0.7994 -1.2057 34 1 2.9219 -1.8425 -4.7319 35 1 1.6034 -0.2634 2.1368 36 1 1.7538 -1.7720 1.2043 37 1 3.9498 1.2214 0.3295 38 1 3.2827 1.3943 1.9855 39 1 5.6415 1.6808 2.3876 40 1 6.0846 0.4595 1.1500 41 1 5.4488 -2.9923 3.4808 42 1 7.1955 -2.9968 3.8243 43 1 6.0863 -2.0727 4.8651 44 1 7.6810 0.4803 2.8021 45 1 7.5669 -0.1960 4.4447 46 1 8.8774 -2.1343 5.0841 47 1 10.9083 -3.4658 4.6771 48 1 12.0622 -3.3192 2.5068 49 1 11.1805 -1.8473 0.7407 50 1 9.1452 -0.5218 1.1449 51 1 3.2627 -1.1762 3.3378 52 1 4.3189 -2.2492 2.3796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602477200.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:40 Heat of formation + Delta-G solvation = 11.880565 kcal Electronic energy + Delta-G solvation = -26640.183370 eV Core-core repulsion = 23217.330587 eV Total energy + Delta-G solvation = -3422.852783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82104 -39.93954 -37.95098 -36.17624 -34.28122 -32.60506 -31.82872 -31.49116 -29.27267 -28.90523 -28.01854 -26.42053 -24.90388 -24.38372 -23.37252 -22.48947 -21.78884 -20.83662 -20.21841 -18.48523 -17.66199 -17.52833 -16.95165 -16.57237 -16.24441 -16.14778 -15.54295 -15.44158 -15.26896 -14.89047 -14.61096 -14.43186 -14.24122 -14.10185 -13.65577 -13.55675 -13.46939 -13.22047 -13.18562 -12.99067 -12.79713 -12.67565 -12.60744 -12.45524 -12.22500 -12.10598 -11.95997 -11.85745 -11.82375 -11.72428 -11.65117 -11.40396 -10.94729 -10.81914 -10.46064 -9.76307 -9.66795 -9.23932 -9.07352 -8.09819 -6.18929 0.45887 0.55033 1.40295 1.41729 1.52097 2.45354 2.73717 3.14162 3.22222 3.22834 3.57908 3.81406 3.90684 3.97678 4.16431 4.19759 4.21092 4.28297 4.31809 4.36305 4.38388 4.44584 4.53783 4.56147 4.61338 4.65402 4.70498 4.73685 4.80446 4.83698 4.86285 4.89532 4.94481 4.97962 5.07426 5.12252 5.16138 5.20476 5.26053 5.32315 5.44739 5.50936 5.59852 5.66742 5.67038 5.74760 5.94151 6.02966 6.08608 6.10845 6.17640 6.22714 6.31331 6.38747 6.99901 7.48307 9.01758 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014238 B = 0.002821 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.137622 B = 9923.140832 C =11231.256567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 H 0.055 0.945 4 C 0.048 3.952 5 C -0.527 4.527 6 H 0.057 0.943 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.066 3.934 14 N -0.531 5.531 15 C 0.041 3.959 16 C -0.108 4.108 17 C 0.086 3.914 18 H 0.063 0.937 19 N -0.541 5.541 20 C 0.020 3.980 21 C 0.097 3.903 22 C -0.086 4.086 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.129 4.129 26 C -0.134 4.134 27 C -0.117 4.117 28 C 0.044 3.956 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.065 0.935 32 H -0.024 1.024 33 H -0.002 1.002 34 H 0.259 0.741 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.132 0.868 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.131 0.869 50 H 0.116 0.884 51 H 0.053 0.947 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.045 1.516 21.351 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.098 4.098 3 H 0.074 0.926 4 C 0.011 3.989 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.200 4.200 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.187 1.187 13 C -0.062 4.062 14 N -0.255 5.255 15 C -0.087 4.087 16 C -0.146 4.146 17 C -0.022 4.022 18 H 0.081 0.919 19 N -0.266 5.266 20 C -0.128 4.128 21 C -0.030 4.030 22 C -0.087 4.087 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.152 4.152 27 C -0.136 4.136 28 C -0.084 4.084 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.084 0.916 32 H -0.006 1.006 33 H 0.017 0.983 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.101 0.899 45 H 0.071 0.929 46 H 0.150 0.850 47 H 0.160 0.840 48 H 0.157 0.843 49 H 0.149 0.851 50 H 0.134 0.866 51 H 0.071 0.929 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.357 0.969 20.303 24.322 hybrid contribution -0.702 0.658 0.015 0.962 sum 12.655 1.627 20.318 23.992 Atomic orbital electron populations 1.21618 0.94903 1.00954 1.00899 1.21112 0.95661 0.98574 0.94451 0.92648 1.18835 0.95055 0.93300 0.91751 1.21714 1.34025 1.08374 0.92421 0.92440 1.25932 0.95481 0.96075 1.02518 1.70142 1.40505 1.22966 1.23909 0.85574 0.78948 0.78421 0.78855 1.20027 1.21095 1.18738 1.22244 0.87152 1.00086 0.96746 1.64660 1.11078 1.14269 1.35539 1.23116 0.95856 0.89397 1.00321 1.22531 0.96207 0.98033 0.97873 1.22407 0.89177 0.92879 0.97760 0.91926 1.62014 1.02386 1.08467 1.53725 1.22499 1.02691 0.93146 0.94427 1.21033 0.87040 0.95476 0.99475 1.19850 0.96079 0.98384 0.94362 1.21250 0.96818 0.96565 0.99193 1.21423 0.95695 0.99586 0.97856 1.21449 1.00716 0.98864 0.93690 1.21409 0.96594 0.97095 1.00070 1.21199 0.95734 0.99896 0.96765 1.22984 0.95419 0.99601 0.90409 0.93572 0.94062 0.91626 1.00579 0.98320 0.93227 0.93649 0.92429 0.92130 0.92824 0.89028 0.91518 0.91637 0.90991 0.94378 0.89874 0.92864 0.84994 0.84025 0.84312 0.85140 0.86595 0.92920 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 8.92 71.98 0.64 -4.05 16 2 C -0.08 -3.30 2.16 -10.79 -0.02 -3.33 16 3 H 0.06 2.31 6.63 -2.38 -0.02 2.29 16 4 C 0.05 2.61 4.39 29.85 0.13 2.74 16 5 C -0.53 -30.66 8.47 25.60 0.22 -30.45 16 6 H 0.06 3.20 7.06 -2.91 -0.02 3.18 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 8 N -0.93 -59.39 13.29 21.45 0.28 -59.11 16 9 Si 0.96 45.80 29.54 68.60 2.03 47.83 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 13 C 0.07 2.32 4.22 86.30 0.36 2.68 16 14 N -0.53 -18.62 4.73 -883.03 -4.18 -22.79 16 15 C 0.04 1.27 5.34 86.65 0.46 1.73 16 16 C -0.11 -2.74 5.44 31.80 0.17 -2.56 16 17 C 0.09 2.00 2.72 45.79 0.12 2.12 16 18 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 19 N -0.54 -12.45 4.56 -896.40 -4.09 -16.54 16 20 C 0.02 0.40 8.88 127.69 1.13 1.53 16 21 C 0.10 1.88 5.00 85.56 0.43 2.31 16 22 C -0.09 -1.77 4.88 -19.87 -0.10 -1.87 16 23 C -0.12 -2.08 7.92 22.27 0.18 -1.91 16 24 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 25 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 26 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16 27 C -0.12 -2.61 9.70 22.27 0.22 -2.40 16 28 C 0.04 1.21 5.89 86.45 0.51 1.72 16 29 H 0.05 1.83 7.10 -2.39 -0.02 1.82 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H -0.02 -1.47 8.14 -2.39 -0.02 -1.49 16 33 H 0.00 -0.10 7.62 -2.39 -0.02 -0.12 16 34 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.05 1.35 7.97 -2.39 -0.02 1.33 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 2.23 7.54 -2.39 -0.02 2.21 16 38 H 0.05 1.46 8.01 -2.39 -0.02 1.44 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.98 7.99 -2.39 -0.02 1.96 16 41 H 0.06 1.41 6.08 -2.39 -0.01 1.39 16 42 H 0.07 1.42 5.91 -2.39 -0.01 1.40 16 43 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 1.62 6.88 -2.38 -0.02 1.61 16 45 H 0.05 0.87 8.06 -2.39 -0.02 0.85 16 46 H 0.13 1.80 8.00 -2.91 -0.02 1.78 16 47 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 49 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 50 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 51 H 0.05 1.28 7.67 -2.39 -0.02 1.26 16 52 H 0.07 2.23 6.04 -2.38 -0.01 2.21 16 Total: -1.00 -69.73 399.10 0.49 -69.24 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.85 Total: 19.03 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 5.59 Total: -37.66 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -7.98 Total: -98.44 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -69.73 0.49 -69.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602477200.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.117 kcal (2) G-P(sol) polarization free energy of solvation -69.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds