Wall clock time and date at job start Tue Mar 31 2020 11:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46706 * 2 1 4 4 C 1.52996 * 109.47275 * 240.00070 * 2 1 3 5 5 C 1.50702 * 109.47180 * 64.99407 * 4 2 1 6 6 H 1.08008 * 120.00213 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00245 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00081 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00174 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47319 * 89.99963 * 9 7 5 11 11 H 1.48498 * 109.47174 * 210.00091 * 9 7 5 12 12 H 1.48501 * 109.47154 * 329.99698 * 9 7 5 13 13 C 1.52991 * 109.47501 * 119.99702 * 2 1 3 14 14 N 1.46899 * 109.47235 * 185.29794 * 13 2 1 15 15 C 1.48561 * 111.00105 * 75.56319 * 14 13 2 16 16 C 1.54373 * 104.70319 * 159.09913 * 15 14 13 17 17 C 1.54264 * 105.05960 * 336.08441 * 16 15 14 18 18 H 1.09006 * 110.32330 * 118.89194 * 17 16 15 19 19 N 1.46897 * 110.32475 * 241.00433 * 17 16 15 20 20 C 1.46898 * 110.99897 * 174.59291 * 19 17 16 21 21 C 1.46904 * 110.99690 * 298.54434 * 19 17 16 22 22 C 1.50703 * 109.46799 * 170.00204 * 21 19 17 23 23 C 1.38237 * 119.99707 * 269.72432 * 22 21 19 24 24 C 1.38233 * 119.99545 * 179.79220 * 23 22 21 25 25 C 1.38233 * 120.00298 * 0.46334 * 24 23 22 26 26 C 1.38237 * 119.99805 * 359.76769 * 25 24 23 27 27 C 1.38231 * 119.99917 * 90.00034 * 22 21 19 28 28 C 1.48853 * 111.13445 * 190.87861 * 14 13 2 29 29 H 1.09007 * 109.47170 * 174.57864 * 1 2 3 30 30 H 1.09003 * 109.47364 * 294.57035 * 1 2 3 31 31 H 1.09000 * 109.47575 * 54.57760 * 1 2 3 32 32 H 1.08995 * 109.47450 * 184.99297 * 4 2 1 33 33 H 1.09001 * 109.47035 * 304.99860 * 4 2 1 34 34 H 0.96996 * 120.00498 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47029 * 65.29728 * 13 2 1 36 36 H 1.09001 * 109.47333 * 305.30163 * 13 2 1 37 37 H 1.09001 * 110.41289 * 40.25347 * 15 14 13 38 38 H 1.08999 * 110.40658 * 277.93891 * 15 14 13 39 39 H 1.09002 * 110.32568 * 94.97963 * 16 15 14 40 40 H 1.08998 * 110.32881 * 217.08816 * 16 15 14 41 41 H 1.09007 * 109.47568 * 59.99864 * 20 19 17 42 42 H 1.09001 * 109.46861 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.46967 * 299.99470 * 20 19 17 44 44 H 1.09003 * 109.47210 * 289.99748 * 21 19 17 45 45 H 1.08995 * 109.46933 * 50.00201 * 21 19 17 46 46 H 1.07995 * 119.99962 * 0.02562 * 23 22 21 47 47 H 1.08001 * 120.00023 * 180.25392 * 24 23 22 48 48 H 1.08003 * 120.00038 * 179.79464 * 25 24 23 49 49 H 1.07997 * 119.99917 * 180.02562 * 26 25 24 50 50 H 1.07997 * 120.00184 * 359.97438 * 27 22 21 51 51 H 1.09002 * 110.39361 * 82.21158 * 28 14 13 52 52 H 1.09005 * 110.49832 * 319.84976 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6412 0.0570 -2.4766 6 1 1.0804 0.9746 -2.3757 7 6 1.9922 -0.4022 -3.7284 8 7 2.6746 -1.5197 -3.8513 9 14 1.4985 0.5628 -5.2496 10 1 2.5645 1.5416 -5.5825 11 1 1.3107 -0.3711 -6.3889 12 1 0.2278 1.2849 -4.9870 13 6 2.0400 -0.7211 1.2492 14 7 3.5035 -0.6113 1.3148 15 6 3.9165 0.7481 1.7490 16 6 5.3542 0.5692 2.2820 17 6 5.4505 -0.9169 2.6844 18 1 6.2224 -1.4180 2.1003 19 7 5.7378 -1.0392 4.1198 20 6 5.7061 -2.4449 4.5451 21 6 7.0262 -0.4172 4.4536 22 6 7.1745 -0.3420 5.9514 23 6 6.7277 0.7733 6.6351 24 6 6.8599 0.8403 8.0094 25 6 7.4476 -0.2037 8.6991 26 6 7.8987 -1.3169 8.0148 27 6 7.7625 -1.3859 6.6409 28 6 4.0628 -1.5108 2.3606 29 1 -0.3634 -1.0231 -0.0971 30 1 -0.3634 0.4273 0.9346 31 1 -0.3634 0.5956 -0.8374 32 1 3.1263 -0.7993 -1.2056 33 1 1.6054 -1.7198 -1.2951 34 1 2.9219 -1.8427 -4.7319 35 1 1.7563 -1.7726 1.2031 36 1 1.6013 -0.2650 2.1367 37 1 3.2600 1.1103 2.5401 38 1 3.9072 1.4362 0.9037 39 1 6.0789 0.7975 1.5004 40 1 5.5190 1.2091 3.1488 41 1 6.4547 -3.0098 3.9894 42 1 5.9225 -2.5068 5.6116 43 1 4.7179 -2.8613 4.3498 44 1 7.8370 -1.0153 4.0377 45 1 7.0638 0.5880 4.0338 46 1 6.2720 1.5905 6.0959 47 1 6.5072 1.7099 8.5441 48 1 7.5538 -0.1498 9.7725 49 1 8.3574 -2.1327 8.5536 50 1 8.1152 -2.2554 6.1063 51 1 4.1641 -2.5252 1.9746 52 1 3.4300 -1.5042 3.2481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602477531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:47 Heat of formation + Delta-G solvation = 26.844404 kcal Electronic energy + Delta-G solvation = -26439.815777 eV Core-core repulsion = 23017.611874 eV Total energy + Delta-G solvation = -3422.203903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.95969 -38.97458 -36.73914 -34.70856 -32.33692 -31.73619 -31.17098 -30.27761 -28.19904 -27.21911 -26.86929 -25.14344 -23.63485 -22.76962 -22.68640 -21.43249 -20.76574 -19.92270 -18.56902 -17.02682 -16.58460 -16.16149 -15.93037 -15.53941 -15.33766 -14.77019 -14.53659 -14.24782 -14.05003 -13.68940 -13.66239 -13.10810 -13.00097 -12.88898 -12.73595 -12.72467 -12.12049 -12.06033 -11.96854 -11.71066 -11.37193 -11.28698 -11.17484 -11.03449 -10.99384 -10.83867 -10.83062 -10.72104 -10.63727 -10.28312 -10.06103 -9.59740 -9.14669 -9.03325 -9.01057 -8.81048 -8.43867 -8.21485 -7.91854 -5.85443 -3.85642 1.08508 1.16683 3.38494 3.41891 3.44662 3.47603 3.89671 4.49806 4.53563 4.56372 4.60132 4.69931 4.76704 4.84791 4.88573 5.04150 5.19521 5.22639 5.25915 5.33736 5.41693 5.45605 5.49898 5.53971 5.68631 5.73980 5.77009 5.77657 5.81311 5.84825 5.92326 5.94663 6.10038 6.13626 6.17363 6.21660 6.26648 6.28291 6.34649 6.38778 6.42953 6.55710 6.74846 6.87990 6.92571 7.02524 7.09578 7.31353 7.36645 7.57259 7.88930 8.11148 8.24703 8.61030 9.22377 9.76233 11.25734 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027194 B = 0.002254 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.374988 B =12421.374821 C =12593.742817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 H 0.054 0.946 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.051 0.949 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.056 3.944 14 N -0.494 5.494 15 C 0.039 3.961 16 C -0.117 4.117 17 C 0.080 3.920 18 H 0.053 0.947 19 N -0.529 5.529 20 C 0.018 3.982 21 C 0.088 3.912 22 C -0.073 4.073 23 C -0.099 4.099 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.115 4.115 28 C 0.041 3.959 29 H 0.045 0.955 30 H 0.027 0.973 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.008 0.992 34 H 0.257 0.743 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.042 0.958 45 H 0.087 0.913 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.076 0.924 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.209 1.399 24.452 26.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.070 0.930 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.072 4.072 14 N -0.218 5.218 15 C -0.090 4.090 16 C -0.156 4.156 17 C -0.028 4.028 18 H 0.071 0.929 19 N -0.254 5.254 20 C -0.130 4.130 21 C -0.039 4.039 22 C -0.073 4.073 23 C -0.117 4.117 24 C -0.140 4.140 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.133 4.133 28 C -0.087 4.087 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.027 0.973 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.106 0.894 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.094 0.906 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.092 1.386 24.005 26.077 hybrid contribution 0.010 0.138 -0.536 0.554 sum 10.102 1.524 23.469 25.596 Atomic orbital electron populations 1.21702 0.96515 1.01197 0.99555 1.21169 0.94118 0.99212 0.95515 0.92712 1.19049 0.97390 0.94437 0.89278 1.21326 1.34196 1.08080 0.91396 0.93027 1.24995 0.95569 0.95088 0.98866 1.69975 1.39335 1.21185 1.23032 0.86711 0.78812 0.79880 0.83253 1.20864 1.21442 1.20073 1.22408 0.86275 1.00904 0.97645 1.65473 1.11397 1.03714 1.41203 1.23053 0.94520 0.92592 0.98805 1.22416 0.97781 0.94994 1.00382 1.22395 0.97266 0.96885 0.86299 0.92912 1.62153 1.30462 1.16266 1.16504 1.22480 1.01631 0.87971 1.00900 1.21102 0.90464 1.00857 0.91472 1.19770 0.97893 0.94355 0.95292 1.21047 0.98608 0.97916 0.94151 1.21161 0.99557 0.98817 0.94428 1.21140 0.99119 0.94171 0.99770 1.21107 1.00389 0.98233 0.94336 1.21074 0.99655 0.98206 0.94386 1.23147 0.93956 0.97677 0.93958 0.93541 0.95373 0.92056 0.94925 0.97341 0.93316 0.91530 0.96055 0.94284 0.89835 0.90977 0.90770 0.95585 0.91155 0.91087 0.93933 0.89442 0.85970 0.86163 0.86332 0.86264 0.86392 0.90566 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.91 37.16 0.33 -2.21 16 2 C -0.08 -1.70 2.40 -90.63 -0.22 -1.92 16 3 H 0.05 1.17 7.32 -51.93 -0.38 0.79 16 4 C 0.04 0.93 4.40 -27.88 -0.12 0.81 16 5 C -0.51 -14.60 8.48 -34.44 -0.29 -14.89 16 6 H 0.05 1.44 7.06 -52.48 -0.37 1.07 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.06 1.00 4.24 -3.83 -0.02 0.98 16 14 N -0.49 -8.53 4.73 -229.72 -1.09 -9.62 16 15 C 0.04 0.58 5.93 -2.18 -0.01 0.57 16 16 C -0.12 -1.48 6.00 -25.35 -0.15 -1.63 16 17 C 0.08 1.01 2.79 -66.33 -0.18 0.82 16 18 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 19 N -0.53 -5.81 4.54 -234.66 -1.06 -6.88 16 20 C 0.02 0.18 8.95 60.06 0.54 0.72 16 21 C 0.09 0.85 4.89 -4.97 -0.02 0.83 16 22 C -0.07 -0.68 4.89 -104.62 -0.51 -1.20 16 23 C -0.10 -0.90 9.70 -39.58 -0.38 -1.29 16 24 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 25 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 26 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 27 C -0.11 -0.99 7.91 -39.59 -0.31 -1.30 16 28 C 0.04 0.59 4.88 -2.02 -0.01 0.58 16 29 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 1.25 7.12 -51.93 -0.37 0.88 16 32 H 0.03 0.93 7.63 -51.93 -0.40 0.53 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 35 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 36 H 0.02 0.35 7.74 -51.93 -0.40 -0.05 16 37 H 0.04 0.57 7.74 -51.93 -0.40 0.17 16 38 H 0.08 1.36 7.74 -51.93 -0.40 0.96 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.83 6.63 -51.93 -0.34 0.48 16 41 H 0.03 0.25 8.14 -51.92 -0.42 -0.17 16 42 H 0.07 0.67 5.88 -51.93 -0.31 0.36 16 43 H 0.07 0.73 6.86 -51.93 -0.36 0.37 16 44 H 0.04 0.40 8.07 -51.93 -0.42 -0.02 16 45 H 0.09 0.81 6.16 -51.93 -0.32 0.49 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 48 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 49 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 50 H 0.12 0.89 7.98 -52.49 -0.42 0.47 16 51 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.05 0.70 7.52 -51.93 -0.39 0.31 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -31.17 400.43 -12.54 -43.71 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -9.48 Total: -1.84 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -2.66 Total: -21.74 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -1.41 Total: -43.26 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.17 -12.54 -43.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602477531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.559 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds