Wall clock time and date at job start Tue Mar 31 2020 11:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46706 * 2 1 4 4 C 1.52996 * 109.47275 * 240.00070 * 2 1 3 5 5 C 1.50702 * 109.47180 * 64.99407 * 4 2 1 6 6 H 1.08008 * 120.00213 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00245 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00081 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00174 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47319 * 89.99963 * 9 7 5 11 11 H 1.48498 * 109.47174 * 210.00091 * 9 7 5 12 12 H 1.48501 * 109.47154 * 329.99698 * 9 7 5 13 13 C 1.52991 * 109.47501 * 119.99702 * 2 1 3 14 14 N 1.46899 * 109.47235 * 185.29794 * 13 2 1 15 15 C 1.48561 * 111.00105 * 75.56319 * 14 13 2 16 16 C 1.54373 * 104.70319 * 159.09913 * 15 14 13 17 17 C 1.54264 * 105.05960 * 336.08441 * 16 15 14 18 18 H 1.09006 * 110.32330 * 118.89194 * 17 16 15 19 19 N 1.46897 * 110.32475 * 241.00433 * 17 16 15 20 20 C 1.46898 * 110.99897 * 174.59291 * 19 17 16 21 21 C 1.46904 * 110.99690 * 298.54434 * 19 17 16 22 22 C 1.50703 * 109.46799 * 170.00204 * 21 19 17 23 23 C 1.38237 * 119.99707 * 269.72432 * 22 21 19 24 24 C 1.38233 * 119.99545 * 179.79220 * 23 22 21 25 25 C 1.38233 * 120.00298 * 0.46334 * 24 23 22 26 26 C 1.38237 * 119.99805 * 359.76769 * 25 24 23 27 27 C 1.38231 * 119.99917 * 90.00034 * 22 21 19 28 28 C 1.48853 * 111.13445 * 190.87861 * 14 13 2 29 29 H 1.09007 * 109.47170 * 174.57864 * 1 2 3 30 30 H 1.09003 * 109.47364 * 294.57035 * 1 2 3 31 31 H 1.09000 * 109.47575 * 54.57760 * 1 2 3 32 32 H 1.08995 * 109.47450 * 184.99297 * 4 2 1 33 33 H 1.09001 * 109.47035 * 304.99860 * 4 2 1 34 34 H 0.96996 * 120.00498 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47029 * 65.29728 * 13 2 1 36 36 H 1.09001 * 109.47333 * 305.30163 * 13 2 1 37 37 H 1.09001 * 110.41289 * 40.25347 * 15 14 13 38 38 H 1.08999 * 110.40658 * 277.93891 * 15 14 13 39 39 H 1.09002 * 110.32568 * 94.97963 * 16 15 14 40 40 H 1.08998 * 110.32881 * 217.08816 * 16 15 14 41 41 H 1.09007 * 109.47568 * 59.99864 * 20 19 17 42 42 H 1.09001 * 109.46861 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.46967 * 299.99470 * 20 19 17 44 44 H 1.09003 * 109.47210 * 289.99748 * 21 19 17 45 45 H 1.08995 * 109.46933 * 50.00201 * 21 19 17 46 46 H 1.07995 * 119.99962 * 0.02562 * 23 22 21 47 47 H 1.08001 * 120.00023 * 180.25392 * 24 23 22 48 48 H 1.08003 * 120.00038 * 179.79464 * 25 24 23 49 49 H 1.07997 * 119.99917 * 180.02562 * 26 25 24 50 50 H 1.07997 * 120.00184 * 359.97438 * 27 22 21 51 51 H 1.09002 * 110.39361 * 82.21158 * 28 14 13 52 52 H 1.09005 * 110.49832 * 319.84976 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6412 0.0570 -2.4766 6 1 1.0804 0.9746 -2.3757 7 6 1.9922 -0.4022 -3.7284 8 7 2.6746 -1.5197 -3.8513 9 14 1.4985 0.5628 -5.2496 10 1 2.5645 1.5416 -5.5825 11 1 1.3107 -0.3711 -6.3889 12 1 0.2278 1.2849 -4.9870 13 6 2.0400 -0.7211 1.2492 14 7 3.5035 -0.6113 1.3148 15 6 3.9165 0.7481 1.7490 16 6 5.3542 0.5692 2.2820 17 6 5.4505 -0.9169 2.6844 18 1 6.2224 -1.4180 2.1003 19 7 5.7378 -1.0392 4.1198 20 6 5.7061 -2.4449 4.5451 21 6 7.0262 -0.4172 4.4536 22 6 7.1745 -0.3420 5.9514 23 6 6.7277 0.7733 6.6351 24 6 6.8599 0.8403 8.0094 25 6 7.4476 -0.2037 8.6991 26 6 7.8987 -1.3169 8.0148 27 6 7.7625 -1.3859 6.6409 28 6 4.0628 -1.5108 2.3606 29 1 -0.3634 -1.0231 -0.0971 30 1 -0.3634 0.4273 0.9346 31 1 -0.3634 0.5956 -0.8374 32 1 3.1263 -0.7993 -1.2056 33 1 1.6054 -1.7198 -1.2951 34 1 2.9219 -1.8427 -4.7319 35 1 1.7563 -1.7726 1.2031 36 1 1.6013 -0.2650 2.1367 37 1 3.2600 1.1103 2.5401 38 1 3.9072 1.4362 0.9037 39 1 6.0789 0.7975 1.5004 40 1 5.5190 1.2091 3.1488 41 1 6.4547 -3.0098 3.9894 42 1 5.9225 -2.5068 5.6116 43 1 4.7179 -2.8613 4.3498 44 1 7.8370 -1.0153 4.0377 45 1 7.0638 0.5880 4.0338 46 1 6.2720 1.5905 6.0959 47 1 6.5072 1.7099 8.5441 48 1 7.5538 -0.1498 9.7725 49 1 8.3574 -2.1327 8.5536 50 1 8.1152 -2.2554 6.1063 51 1 4.1641 -2.5252 1.9746 52 1 3.4300 -1.5042 3.2481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602477531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:46 Heat of formation + Delta-G solvation = 9.604692 kcal Electronic energy + Delta-G solvation = -26440.563347 eV Core-core repulsion = 23017.611874 eV Total energy + Delta-G solvation = -3422.951473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81837 -39.89949 -37.92137 -36.22967 -34.29006 -32.61966 -31.83218 -31.45166 -29.33525 -28.87200 -28.04242 -26.45274 -24.92733 -24.32867 -23.36857 -22.40751 -21.79760 -21.06022 -20.11214 -18.47433 -17.65129 -17.46065 -17.04860 -16.54792 -16.25937 -16.07325 -15.80340 -15.42799 -15.22594 -14.74544 -14.53124 -14.47367 -14.25489 -14.10022 -13.86814 -13.59689 -13.40324 -13.37098 -13.18060 -12.90310 -12.78331 -12.71760 -12.56370 -12.47630 -12.21714 -12.10127 -12.00982 -11.94251 -11.75175 -11.72891 -11.62666 -11.41646 -10.92363 -10.86170 -10.46089 -9.76217 -9.68281 -9.29000 -9.24150 -8.10385 -6.18843 0.45704 0.55428 1.40373 1.41642 1.52139 2.45285 2.66280 3.05138 3.22243 3.38637 3.58579 3.73431 3.88243 3.97708 4.13725 4.17402 4.20743 4.29265 4.34041 4.36707 4.37317 4.43273 4.54692 4.56889 4.63834 4.68254 4.68958 4.75605 4.78563 4.83984 4.86700 4.90577 4.93945 5.01157 5.03188 5.07289 5.16264 5.17203 5.21040 5.30879 5.44908 5.51311 5.60406 5.66446 5.67187 5.73853 5.88814 5.95011 6.03154 6.04763 6.15288 6.19956 6.25439 6.39216 6.99570 7.48095 9.01214 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027194 B = 0.002254 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.374988 B =12421.374821 C =12593.742817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.051 0.949 4 C 0.047 3.953 5 C -0.527 4.527 6 H 0.057 0.943 7 C -0.004 4.004 8 N -0.934 5.934 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.066 3.934 14 N -0.526 5.526 15 C 0.039 3.961 16 C -0.109 4.109 17 C 0.088 3.912 18 H 0.044 0.956 19 N -0.531 5.531 20 C 0.020 3.980 21 C 0.091 3.909 22 C -0.085 4.085 23 C -0.113 4.113 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.129 4.129 27 C -0.124 4.124 28 C 0.047 3.953 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.000 1.000 33 H -0.023 1.023 34 H 0.259 0.741 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.028 0.972 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.090 0.910 46 H 0.125 0.875 47 H 0.136 0.864 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.125 0.875 51 H 0.067 0.933 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.115 2.515 26.101 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.093 4.093 3 H 0.069 0.931 4 C 0.010 3.990 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.782 3.218 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.188 1.188 13 C -0.063 4.063 14 N -0.250 5.250 15 C -0.088 4.088 16 C -0.147 4.147 17 C -0.021 4.021 18 H 0.062 0.938 19 N -0.255 5.255 20 C -0.128 4.128 21 C -0.036 4.036 22 C -0.086 4.086 23 C -0.131 4.131 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.081 4.081 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.019 0.981 33 H -0.004 1.004 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.047 0.953 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.108 0.892 46 H 0.143 0.857 47 H 0.154 0.846 48 H 0.157 0.843 49 H 0.156 0.844 50 H 0.143 0.857 51 H 0.086 0.914 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.997 2.512 25.673 27.665 hybrid contribution 0.079 -0.239 -0.992 1.023 sum 10.076 2.273 24.681 26.756 Atomic orbital electron populations 1.21625 0.94969 1.00975 1.00841 1.21016 0.95409 0.98447 0.94454 0.93103 1.18843 0.95177 0.93296 0.91658 1.21732 1.33966 1.08341 0.92474 0.92519 1.25925 0.95520 0.96117 1.02493 1.70124 1.40570 1.22949 1.23912 0.85569 0.78940 0.78419 0.78840 1.20052 1.21071 1.18794 1.22204 0.87117 1.00115 0.96823 1.65387 1.11022 1.05437 1.43189 1.23039 0.96204 0.91200 0.98404 1.22361 0.96107 0.95342 1.00923 1.22226 0.95903 0.96536 0.87420 0.93781 1.62151 1.31491 1.16901 1.14985 1.22478 1.01495 0.87490 1.01333 1.21095 0.89700 1.00788 0.92002 1.19791 0.98827 0.94974 0.94988 1.21204 0.99044 0.98068 0.94807 1.21424 0.99438 0.99624 0.94260 1.21460 0.98428 0.93851 1.00941 1.21396 1.00135 0.98912 0.94216 1.21232 0.99716 0.98309 0.94949 1.23085 0.94947 0.96813 0.93263 0.93982 0.91755 0.93566 0.98111 1.00448 0.93215 0.92299 0.93692 0.93251 0.91626 0.91184 0.88887 0.95316 0.90431 0.91500 0.93838 0.89215 0.85690 0.84579 0.84316 0.84435 0.85735 0.91434 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 8.91 71.98 0.64 -4.10 16 2 C -0.07 -3.12 2.40 -10.80 -0.03 -3.15 16 3 H 0.05 2.17 7.32 -2.39 -0.02 2.15 16 4 C 0.05 2.57 4.40 29.85 0.13 2.71 16 5 C -0.53 -30.60 8.48 25.60 0.22 -30.39 16 6 H 0.06 3.16 7.06 -2.91 -0.02 3.14 16 7 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 8 N -0.93 -58.81 13.29 21.45 0.28 -58.53 16 9 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 13 C 0.07 2.33 4.24 86.30 0.37 2.69 16 14 N -0.53 -18.29 4.73 -880.70 -4.16 -22.45 16 15 C 0.04 1.17 5.93 86.45 0.51 1.69 16 16 C -0.11 -2.66 6.00 31.49 0.19 -2.47 16 17 C 0.09 2.17 2.79 45.81 0.13 2.29 16 18 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 19 N -0.53 -11.06 4.54 -896.32 -4.07 -15.13 16 20 C 0.02 0.38 8.95 127.69 1.14 1.52 16 21 C 0.09 1.65 4.89 85.56 0.42 2.07 16 22 C -0.09 -1.50 4.89 -19.87 -0.10 -1.60 16 23 C -0.11 -1.91 9.70 22.27 0.22 -1.69 16 24 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 25 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 26 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 27 C -0.12 -1.96 7.91 22.27 0.18 -1.78 16 28 C 0.05 1.35 4.88 86.39 0.42 1.77 16 29 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.85 7.12 -2.39 -0.02 1.83 16 32 H 0.00 0.03 7.63 -2.39 -0.02 0.01 16 33 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 34 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 36 H 0.04 1.39 7.74 -2.39 -0.02 1.37 16 37 H 0.05 1.36 7.74 -2.39 -0.02 1.34 16 38 H 0.07 2.16 7.74 -2.39 -0.02 2.14 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 1.91 6.63 -2.39 -0.02 1.90 16 41 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.08 1.37 5.88 -2.39 -0.01 1.36 16 43 H 0.07 1.32 6.86 -2.39 -0.02 1.30 16 44 H 0.04 0.78 8.07 -2.39 -0.02 0.76 16 45 H 0.09 1.56 6.16 -2.39 -0.01 1.55 16 46 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 47 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 48 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 49 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 50 H 0.12 1.72 7.98 -2.91 -0.02 1.70 16 51 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 52 H 0.06 1.52 7.52 -2.38 -0.02 1.50 16 Total: -1.00 -67.69 400.43 0.51 -67.18 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.85 Total: 16.20 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 5.57 Total: -34.94 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -7.94 Total: -96.11 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -67.69 0.51 -67.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602477531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.788 kcal (2) G-P(sol) polarization free energy of solvation -67.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds