Wall clock time and date at job start Tue Mar 31 2020 11:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 H 1.07996 * 119.99755 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00135 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99773 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99975 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47237 * 90.00441 * 9 7 5 11 11 H 1.48506 * 109.47247 * 210.00240 * 9 7 5 12 12 H 1.48500 * 109.47404 * 330.00197 * 9 7 5 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 N 1.46504 * 109.46822 * 64.99847 * 13 2 1 15 15 C 1.39676 * 120.00111 * 179.97438 * 14 13 2 16 16 C 1.38939 * 120.07464 * 359.72484 * 15 14 13 17 17 C 1.38073 * 119.92527 * 179.78810 * 16 15 14 18 18 C 1.38312 * 120.07572 * 0.48978 * 17 16 15 19 19 C 1.38259 * 120.14800 * 359.74215 * 18 17 16 20 20 C 1.50703 * 119.96237 * 179.97438 * 19 18 17 21 21 N 1.46900 * 109.47195 * 270.02589 * 20 19 18 22 22 C 1.46852 * 110.99976 * 294.20637 * 21 20 19 23 23 C 1.53031 * 109.51999 * 174.16259 * 22 21 20 24 24 C 1.53124 * 109.27982 * 59.18253 * 23 22 21 25 25 C 1.53114 * 109.16056 * 302.34490 * 24 23 22 26 26 C 1.46852 * 110.99794 * 169.99981 * 21 20 19 27 27 C 1.38129 * 120.07747 * 0.02562 * 19 18 17 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 32 32 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 33 33 H 0.97000 * 120.00259 * 179.97438 * 8 7 5 34 34 H 1.08994 * 109.47465 * 185.00197 * 13 2 1 35 35 H 1.08998 * 109.47565 * 305.00629 * 13 2 1 36 36 H 0.96995 * 120.00028 * 0.02562 * 14 13 2 37 37 H 1.07998 * 120.03368 * 0.02562 * 16 15 14 38 38 H 1.08003 * 119.96373 * 180.21018 * 17 16 15 39 39 H 1.08002 * 119.92393 * 179.76327 * 18 17 16 40 40 H 1.09003 * 109.47023 * 30.02691 * 20 19 18 41 41 H 1.09000 * 109.46751 * 150.02277 * 20 19 18 42 42 H 1.08996 * 109.45935 * 294.18096 * 22 21 20 43 43 H 1.09002 * 109.45627 * 54.14755 * 22 21 20 44 44 H 1.09004 * 109.50674 * 299.23757 * 23 22 21 45 45 H 1.09000 * 109.50135 * 179.12456 * 23 22 21 46 46 H 1.08999 * 109.52125 * 182.44025 * 24 23 22 47 47 H 1.08997 * 109.52026 * 62.25106 * 24 23 22 48 48 H 1.09004 * 109.50155 * 297.71550 * 25 24 23 49 49 H 1.08998 * 109.50372 * 177.59827 * 25 24 23 50 50 H 1.08997 * 109.46054 * 305.85584 * 26 21 20 51 51 H 1.08997 * 109.46014 * 65.82105 * 26 21 20 52 52 H 1.07994 * 120.03828 * 179.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5622 5.2497 10 1 0.1702 0.0938 5.7227 11 1 2.5065 0.3520 6.3189 12 1 1.4228 2.0075 4.9170 13 6 2.0400 -0.7213 -1.2492 14 7 1.6524 0.0353 -2.4423 15 6 2.0089 -0.4294 -3.7104 16 6 2.7361 -1.6060 -3.8417 17 6 3.0831 -2.0649 -5.0968 18 6 2.7164 -1.3494 -6.2223 19 6 1.9969 -0.1756 -6.0950 20 6 1.6000 0.6009 -7.3240 21 7 2.6540 1.5701 -7.6525 22 6 2.7704 2.5953 -6.6075 23 6 3.9684 3.4987 -6.9087 24 6 3.7731 4.1578 -8.2770 25 6 3.6060 3.0687 -9.3402 26 6 2.4187 2.1776 -8.9685 27 6 1.6423 0.2866 -4.8426 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6054 -1.7199 1.2952 32 1 3.1263 -0.7995 1.2056 33 1 2.9227 -1.8423 4.7318 34 1 3.1263 -0.7996 -1.2055 35 1 1.6054 -1.7198 -1.2952 36 1 1.1488 0.8593 -2.3517 37 1 3.0262 -2.1631 -2.9631 38 1 3.6454 -2.9812 -5.1998 39 1 2.9924 -1.7086 -7.2027 40 1 1.4646 -0.0857 -8.1597 41 1 0.6663 1.1301 -7.1336 42 1 1.8604 3.1946 -6.5838 43 1 2.9131 2.1133 -5.6403 44 1 4.8806 2.9022 -6.9189 45 1 4.0452 4.2690 -6.1414 46 1 4.6442 4.7683 -8.5148 47 1 2.8822 4.7853 -8.2552 48 1 4.5126 2.4653 -9.3886 49 1 3.4241 3.5317 -10.3100 50 1 2.3058 1.3924 -9.7160 51 1 1.5103 2.7790 -8.9337 52 1 1.0807 1.2037 -4.7438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602485952.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:43 Heat of formation + Delta-G solvation = -15.533264 kcal Electronic energy + Delta-G solvation = -25985.915720 eV Core-core repulsion = 22561.874184 eV Total energy + Delta-G solvation = -3424.041536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.76836 -39.57814 -38.07775 -35.77802 -34.71167 -33.83139 -32.04432 -31.41824 -30.34036 -28.70164 -27.31469 -26.95848 -24.85155 -23.98124 -23.78850 -23.15007 -21.29839 -20.82264 -20.54986 -18.55430 -17.91802 -17.08308 -17.01566 -16.63151 -16.31932 -16.02154 -15.90795 -15.40367 -15.27388 -14.86053 -14.68329 -14.45907 -14.34252 -14.27619 -14.15527 -14.00019 -13.56813 -13.36172 -13.26393 -13.00512 -12.77382 -12.73440 -12.66899 -12.28203 -12.15471 -12.11023 -12.05492 -11.84959 -11.68413 -11.56819 -11.27421 -11.22858 -11.13873 -11.03960 -10.81802 -10.55077 -9.67488 -9.19313 -8.23881 -8.18894 -6.28083 0.53476 0.81524 1.40043 1.40631 1.51383 2.39716 2.58180 2.84040 3.14954 3.28686 3.83498 3.92744 3.98336 4.04299 4.08154 4.10282 4.16690 4.28274 4.34405 4.36772 4.45908 4.50448 4.60976 4.64637 4.67836 4.69960 4.72773 4.77180 4.79142 4.85972 4.91652 4.97581 4.99101 5.08553 5.09908 5.19757 5.20560 5.24663 5.29620 5.32657 5.43009 5.48235 5.49257 5.51016 5.70302 5.74869 5.84784 5.85020 6.02161 6.14404 6.23535 6.25623 6.49155 6.86880 6.92437 7.40203 8.93104 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019723 B = 0.002209 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.341942 B =12671.959614 C =13466.056059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.084 4.084 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.263 1.263 13 C 0.145 3.855 14 N -0.740 5.740 15 C 0.207 3.793 16 C -0.219 4.219 17 C -0.077 4.077 18 C -0.167 4.167 19 C -0.035 4.035 20 C 0.099 3.901 21 N -0.539 5.539 22 C 0.052 3.948 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.114 4.114 26 C 0.054 3.946 27 C -0.198 4.198 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.041 0.959 31 H -0.006 1.006 32 H -0.010 1.010 33 H 0.262 0.738 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.402 0.598 37 H 0.110 0.890 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.042 0.958 42 H 0.030 0.970 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.033 0.967 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 7.640 -28.498 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.103 4.103 3 H 0.080 0.920 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.574 5.574 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.188 1.188 13 C 0.020 3.980 14 N -0.369 5.369 15 C 0.103 3.897 16 C -0.242 4.242 17 C -0.095 4.095 18 C -0.188 4.188 19 C -0.036 4.036 20 C -0.028 4.028 21 N -0.264 5.264 22 C -0.076 4.076 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.152 4.152 26 C -0.073 4.073 27 C -0.221 4.221 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.012 0.988 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.238 0.762 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.114 0.886 41 H 0.061 0.939 42 H 0.048 0.952 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.100 0.900 50 H 0.102 0.898 51 H 0.051 0.949 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.632 7.172 -28.243 29.146 hybrid contribution -0.870 0.696 1.623 1.968 sum -1.502 7.868 -26.621 27.800 Atomic orbital electron populations 1.21627 0.94500 1.01007 1.00999 1.21195 0.96679 0.99113 0.93310 0.91982 1.18963 0.94456 0.94774 0.92179 1.21602 1.34552 1.08634 0.91909 0.91913 1.25948 0.95279 0.96117 1.02678 1.70095 1.40127 1.22896 1.24315 0.85504 0.77962 0.79270 0.78664 1.19914 1.21053 1.18764 1.21195 0.98129 0.94763 0.83909 1.44732 1.61966 1.28100 1.02150 1.18015 0.93197 0.93051 0.85426 1.20821 1.06384 0.98345 0.98626 1.21094 0.97505 0.99358 0.91557 1.20893 1.02644 0.96487 0.98749 1.19557 0.95967 0.94656 0.93412 1.21016 0.92126 0.94268 0.95408 1.61915 1.45623 1.16163 1.02713 1.22144 0.97464 0.92584 0.95381 1.21573 0.97926 0.98131 0.97851 1.21579 1.01982 0.97691 0.94480 1.21575 0.98338 0.96569 0.98689 1.22166 0.97214 0.97729 0.90229 1.20502 1.08520 1.02017 0.91045 0.91854 0.93232 0.94031 0.98786 0.99165 0.92923 0.93764 0.93219 0.76226 0.87155 0.84752 0.85006 0.88576 0.93940 0.95163 0.91467 0.92215 0.91388 0.91133 0.92131 0.91791 0.90040 0.89763 0.94884 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 8.88 71.98 0.64 -3.75 16 2 C -0.08 -3.29 2.37 -10.79 -0.03 -3.32 16 3 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.03 1.74 4.45 29.85 0.13 1.87 16 5 C -0.53 -29.28 8.41 25.60 0.22 -29.07 16 6 H 0.06 3.32 7.05 -2.91 -0.02 3.30 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 8 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 9 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 13 C 0.14 4.96 4.30 86.38 0.37 5.33 16 14 N -0.74 -21.40 5.46 -339.41 -1.85 -23.26 16 15 C 0.21 5.82 6.65 38.22 0.25 6.07 16 16 C -0.22 -6.20 9.31 22.40 0.21 -5.99 16 17 C -0.08 -1.84 10.04 22.25 0.22 -1.62 16 18 C -0.17 -3.67 9.70 22.29 0.22 -3.45 16 19 C -0.03 -0.76 4.89 -19.88 -0.10 -0.86 16 20 C 0.10 1.70 5.12 85.56 0.44 2.14 16 21 N -0.54 -9.43 4.65 -900.93 -4.19 -13.62 16 22 C 0.05 0.97 5.16 86.32 0.44 1.41 16 23 C -0.12 -1.94 6.09 30.65 0.19 -1.75 16 24 C -0.12 -1.56 6.00 30.67 0.18 -1.37 16 25 C -0.11 -1.38 6.09 30.64 0.19 -1.19 16 26 C 0.05 0.72 5.46 86.32 0.47 1.19 16 27 C -0.20 -4.79 7.72 22.40 0.17 -4.62 16 28 H 0.06 1.81 7.18 -2.39 -0.02 1.80 16 29 H 0.05 1.88 6.95 -2.39 -0.02 1.86 16 30 H 0.04 1.49 8.14 -2.38 -0.02 1.48 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 34 H 0.04 1.60 7.94 -2.39 -0.02 1.58 16 35 H 0.05 1.75 7.96 -2.39 -0.02 1.73 16 36 H 0.40 10.46 7.67 -92.71 -0.71 9.75 16 37 H 0.11 3.28 6.74 -2.91 -0.02 3.26 16 38 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.10 1.37 7.93 -2.39 -0.02 1.35 16 41 H 0.04 0.71 8.07 -2.39 -0.02 0.69 16 42 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.07 1.49 5.75 -2.39 -0.01 1.48 16 44 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.08 0.95 8.01 -2.39 -0.02 0.93 16 51 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 52 H 0.12 2.64 7.95 -2.91 -0.02 2.62 16 Total: -1.00 -62.68 401.67 1.11 -61.58 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.15 Total: 24.23 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 4.68 Total: -38.66 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -5.76 Total: -93.20 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -62.68 1.11 -61.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602485952.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.043 kcal (2) G-P(sol) polarization free energy of solvation -62.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds