Wall clock time and date at job start Tue Mar 31 2020 11:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47284 * 2 1 4 4 C 1.52999 * 109.47336 * 120.00446 * 2 1 3 5 5 C 1.50706 * 109.46644 * 294.99635 * 4 2 1 6 6 H 1.07996 * 120.00566 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99693 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00035 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47268 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47710 * 119.99791 * 9 7 5 12 12 H 1.48502 * 109.47003 * 239.99763 * 9 7 5 13 13 C 1.53002 * 109.47013 * 240.00304 * 2 1 3 14 14 N 1.46506 * 109.47035 * 64.99796 * 13 2 1 15 15 C 1.39673 * 119.99605 * 180.02562 * 14 13 2 16 16 C 1.38914 * 120.07707 * 359.72057 * 15 14 13 17 17 C 1.38106 * 119.92380 * 179.76726 * 16 15 14 18 18 C 1.38287 * 120.07267 * 0.51577 * 17 16 15 19 19 C 1.50700 * 119.92402 * 179.76601 * 18 17 16 20 20 C 1.53001 * 109.47022 * 269.97696 * 19 18 17 21 21 N 1.46898 * 109.47441 * 180.02562 * 20 19 18 22 22 C 1.48529 * 111.00241 * 52.59837 * 21 20 19 23 23 C 1.54935 * 103.22928 * 159.72631 * 22 21 20 24 24 C 1.54595 * 102.91914 * 322.58757 * 23 22 21 25 25 C 1.47895 * 111.00214 * 170.00141 * 21 20 19 26 26 C 1.38283 * 120.15072 * 359.74237 * 18 17 16 27 27 C 1.38101 * 120.07597 * 359.97438 * 26 18 17 28 28 H 1.08988 * 109.47502 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46690 * 299.99822 * 1 2 3 30 30 H 1.09007 * 109.47116 * 59.99499 * 1 2 3 31 31 H 1.08992 * 109.47021 * 54.99347 * 4 2 1 32 32 H 1.08998 * 109.47006 * 174.99962 * 4 2 1 33 33 H 0.96996 * 120.00202 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.46930 * 305.00026 * 13 2 1 35 35 H 1.09000 * 109.47312 * 184.99970 * 13 2 1 36 36 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 37 37 H 1.07998 * 120.03713 * 0.02562 * 16 15 14 38 38 H 1.07994 * 119.96460 * 180.25714 * 17 16 15 39 39 H 1.09004 * 109.47371 * 29.97433 * 19 18 17 40 40 H 1.08999 * 109.47324 * 149.97674 * 19 18 17 41 41 H 1.09004 * 109.46832 * 300.00067 * 20 19 18 42 42 H 1.08999 * 109.47090 * 59.99834 * 20 19 18 43 43 H 1.09007 * 110.66913 * 278.16240 * 22 21 20 44 44 H 1.09000 * 110.66603 * 41.29238 * 22 21 20 45 45 H 1.09002 * 110.72658 * 204.22868 * 23 22 21 46 46 H 1.08997 * 110.72138 * 80.94459 * 23 22 21 47 47 H 1.09006 * 110.30993 * 263.03990 * 24 23 22 48 48 H 1.08999 * 110.39289 * 140.91792 * 24 23 22 49 49 H 1.09000 * 109.91731 * 333.50195 * 25 21 20 50 50 H 1.09000 * 109.92244 * 94.60292 * 25 21 20 51 51 H 1.08009 * 119.96012 * 179.97438 * 26 18 17 52 52 H 1.08005 * 120.03673 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0801 0.9741 2.3758 7 6 1.9925 -0.4023 3.7283 8 7 2.6747 -1.5199 3.8511 9 14 1.4978 0.5620 5.2496 10 1 0.7416 1.7737 4.8435 11 1 0.6434 -0.2873 6.1180 12 1 2.7156 0.9664 5.9970 13 6 2.0400 -0.7212 -1.2493 14 7 1.6523 0.0355 -2.4424 15 6 2.0079 -0.4298 -3.7105 16 6 2.7341 -1.6067 -3.8418 17 6 3.0798 -2.0664 -5.0974 18 6 2.7132 -1.3509 -6.2226 19 6 3.0968 -1.8528 -7.5908 20 6 4.4593 -1.2768 -7.9818 21 7 4.8330 -1.7656 -9.3157 22 6 3.7500 -1.5093 -10.2993 23 6 4.4841 -1.5810 -11.6618 24 6 5.8493 -0.9241 -11.3538 25 6 6.0213 -1.0500 -9.8287 26 6 1.9949 -0.1761 -6.0951 27 6 1.6408 0.2862 -4.8429 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6054 -1.7198 1.2950 32 1 3.1263 -0.7995 1.2054 33 1 2.9214 -1.8433 4.7317 34 1 1.6053 -1.7198 -1.2952 35 1 3.1263 -0.7994 -1.2057 36 1 1.1488 0.8596 -2.3517 37 1 3.0243 -2.1638 -2.9633 38 1 3.6408 -2.9834 -5.2005 39 1 3.1533 -2.9413 -7.5759 40 1 2.3473 -1.5378 -8.3167 41 1 4.4028 -0.1884 -7.9967 42 1 5.2088 -1.5919 -7.2558 43 1 2.9817 -2.2799 -10.2352 44 1 3.3179 -0.5203 -10.1467 45 1 3.9454 -1.0135 -12.4206 46 1 4.6163 -2.6168 -11.9746 47 1 5.8391 0.1254 -11.6481 48 1 6.6504 -1.4532 -11.8699 49 1 6.0809 -0.0589 -9.3787 50 1 6.9238 -1.6166 -9.5993 51 1 1.7105 0.3805 -6.9759 52 1 1.0802 1.2040 -4.7440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602491319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:35 Heat of formation + Delta-G solvation = 1.283343 kcal Electronic energy + Delta-G solvation = -25141.986842 eV Core-core repulsion = 21718.674529 eV Total energy + Delta-G solvation = -3423.312314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.70542 -39.03405 -36.85391 -34.71224 -33.26747 -32.05563 -30.79589 -30.32986 -29.20582 -27.41192 -26.70543 -25.52209 -23.50638 -23.13530 -22.13071 -21.27577 -21.06607 -20.20678 -19.29800 -17.05711 -16.58451 -16.42397 -16.29850 -15.61038 -15.11876 -14.71807 -14.53070 -14.49844 -14.26552 -13.81043 -13.61261 -13.43388 -13.22348 -13.12508 -12.80787 -12.60919 -12.38272 -12.24474 -12.01993 -11.75486 -11.66064 -11.51676 -11.42429 -11.20081 -11.06029 -10.95339 -10.93776 -10.89111 -10.69896 -10.41557 -10.35301 -9.97873 -9.57543 -9.32744 -9.06220 -8.80341 -8.71203 -8.39749 -7.10997 -6.04042 -4.05983 1.57752 1.72110 3.28138 3.36056 3.39268 3.66639 3.75932 3.99535 4.30285 4.35520 4.42873 4.59300 4.82182 4.91555 5.01497 5.04982 5.08288 5.17061 5.18862 5.31418 5.31941 5.41522 5.43453 5.45822 5.51713 5.54794 5.58277 5.61702 5.66723 5.71632 5.80976 5.86071 5.89699 5.93288 5.99456 6.16157 6.18793 6.34858 6.40254 6.49011 6.54055 6.59010 6.75348 6.80886 6.82711 6.97586 7.00279 7.06735 7.59671 7.60274 7.73299 7.94617 7.99588 8.36988 8.99915 9.57969 11.07361 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.036028 B = 0.001692 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.990136 B =16542.876936 C =16878.142322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.061 0.939 4 C 0.030 3.970 5 C -0.516 4.516 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.126 3.874 14 N -0.741 5.741 15 C 0.224 3.776 16 C -0.198 4.198 17 C -0.063 4.063 18 C -0.158 4.158 19 C -0.066 4.066 20 C 0.052 3.948 21 N -0.520 5.520 22 C 0.032 3.968 23 C -0.125 4.125 24 C -0.132 4.132 25 C 0.034 3.966 26 C -0.067 4.067 27 C -0.204 4.204 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.030 0.970 31 H 0.019 0.981 32 H 0.017 0.983 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.397 0.603 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.044 0.956 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.044 0.956 50 H 0.078 0.922 51 H 0.112 0.888 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 0.919 -29.451 29.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.080 0.920 4 C -0.008 4.008 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.002 3.998 14 N -0.368 5.368 15 C 0.119 3.881 16 C -0.221 4.221 17 C -0.082 4.082 18 C -0.161 4.161 19 C -0.103 4.103 20 C -0.076 4.076 21 N -0.244 5.244 22 C -0.096 4.096 23 C -0.163 4.163 24 C -0.170 4.170 25 C -0.094 4.094 26 C -0.086 4.086 27 C -0.227 4.227 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.232 0.768 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.054 0.946 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.062 0.938 50 H 0.097 0.903 51 H 0.130 0.870 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.569 0.127 -29.054 29.168 hybrid contribution -0.537 1.705 1.082 2.090 sum 2.033 1.832 -27.972 28.106 Atomic orbital electron populations 1.21718 0.95918 1.01101 1.00160 1.21442 0.95648 0.99790 0.94630 0.92013 1.19085 0.96275 0.95561 0.89864 1.21230 1.34939 1.08379 0.90916 0.92508 1.25018 0.95232 0.95081 0.99151 1.69969 1.38894 1.21092 1.23421 0.86555 0.78281 0.80071 0.83202 1.19786 1.21031 1.21048 1.21630 0.99043 0.95166 0.83935 1.45036 1.61111 1.27925 1.02714 1.17945 0.92172 0.92513 0.85508 1.20707 1.05448 0.97895 0.98024 1.20749 0.97423 0.98523 0.91486 1.19400 1.04649 0.97526 0.94485 1.20439 0.95463 1.00936 0.93495 1.22358 0.97572 0.97269 0.90372 1.64825 1.03869 1.53642 1.02053 1.23256 0.94826 1.00112 0.91362 1.22491 0.95530 1.01478 0.96813 1.22399 0.98121 1.00848 0.95615 1.22876 0.94874 0.97127 0.94541 1.20627 0.96676 0.95087 0.96238 1.20525 1.08343 1.02213 0.91599 0.93466 0.91769 0.95123 0.96287 0.96436 0.93037 0.92621 0.92576 0.76838 0.85979 0.86489 0.90743 0.91694 0.94647 0.90430 0.89848 0.93737 0.91179 0.90735 0.91643 0.91039 0.93776 0.90349 0.86986 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.88 37.16 0.33 -2.03 16 2 C -0.10 -1.86 2.37 -90.62 -0.22 -2.07 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.52 -14.08 8.41 -34.44 -0.29 -14.37 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.13 2.10 4.30 -4.04 -0.02 2.09 16 14 N -0.74 -10.81 5.46 -58.63 -0.32 -11.13 16 15 C 0.22 3.18 6.65 -83.79 -0.56 2.62 16 16 C -0.20 -2.76 9.31 -39.38 -0.37 -3.13 16 17 C -0.06 -0.77 9.69 -39.61 -0.38 -1.16 16 18 C -0.16 -1.78 5.14 -104.59 -0.54 -2.32 16 19 C -0.07 -0.61 5.00 -27.88 -0.14 -0.75 16 20 C 0.05 0.48 5.01 -3.82 -0.02 0.46 16 21 N -0.52 -4.53 5.40 -230.46 -1.24 -5.78 16 22 C 0.03 0.24 5.10 -1.90 -0.01 0.23 16 23 C -0.13 -0.76 7.06 -24.87 -0.18 -0.94 16 24 C -0.13 -0.80 6.93 -25.37 -0.18 -0.98 16 25 C 0.03 0.26 6.70 -2.76 -0.02 0.24 16 26 C -0.07 -0.77 9.69 -39.62 -0.38 -1.15 16 27 C -0.20 -2.57 9.90 -39.38 -0.39 -2.96 16 28 H 0.05 0.85 8.14 -51.94 -0.42 0.43 16 29 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 30 H 0.03 0.46 7.18 -51.93 -0.37 0.09 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.06 0.95 7.96 -51.93 -0.41 0.53 16 35 H 0.06 0.97 7.94 -51.93 -0.41 0.55 16 36 H 0.40 5.34 7.67 -40.82 -0.31 5.03 16 37 H 0.12 1.72 6.73 -52.49 -0.35 1.37 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.06 0.55 6.74 -51.93 -0.35 0.20 16 41 H 0.04 0.34 7.81 -51.93 -0.41 -0.07 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.59 7.66 -51.92 -0.40 0.19 16 44 H 0.04 0.33 8.00 -51.93 -0.42 -0.09 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 49 H 0.04 0.34 7.57 -51.93 -0.39 -0.05 16 50 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.11 1.06 8.06 -52.48 -0.42 0.63 16 52 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 406.29 15.07 6.12 6.12 Total: -1.00 -29.14 406.29 -12.90 -42.05 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -9.61 Total: 2.25 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -3.57 Total: -24.13 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -0.83 Total: -42.60 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.14 -12.90 -42.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602491319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.329 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds