Wall clock time and date at job start Tue Mar 31 2020 11:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47284 * 2 1 4 4 C 1.52999 * 109.47336 * 120.00446 * 2 1 3 5 5 C 1.50706 * 109.46644 * 294.99635 * 4 2 1 6 6 H 1.07996 * 120.00566 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99693 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00035 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47268 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47710 * 119.99791 * 9 7 5 12 12 H 1.48502 * 109.47003 * 239.99763 * 9 7 5 13 13 C 1.53002 * 109.47013 * 240.00304 * 2 1 3 14 14 N 1.46506 * 109.47035 * 64.99796 * 13 2 1 15 15 C 1.39673 * 119.99605 * 180.02562 * 14 13 2 16 16 C 1.38914 * 120.07707 * 359.72057 * 15 14 13 17 17 C 1.38106 * 119.92380 * 179.76726 * 16 15 14 18 18 C 1.38287 * 120.07267 * 0.51577 * 17 16 15 19 19 C 1.50700 * 119.92402 * 179.76601 * 18 17 16 20 20 C 1.53001 * 109.47022 * 269.97696 * 19 18 17 21 21 N 1.46898 * 109.47441 * 180.02562 * 20 19 18 22 22 C 1.48529 * 111.00241 * 52.59837 * 21 20 19 23 23 C 1.54935 * 103.22928 * 159.72631 * 22 21 20 24 24 C 1.54595 * 102.91914 * 322.58757 * 23 22 21 25 25 C 1.47895 * 111.00214 * 170.00141 * 21 20 19 26 26 C 1.38283 * 120.15072 * 359.74237 * 18 17 16 27 27 C 1.38101 * 120.07597 * 359.97438 * 26 18 17 28 28 H 1.08988 * 109.47502 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46690 * 299.99822 * 1 2 3 30 30 H 1.09007 * 109.47116 * 59.99499 * 1 2 3 31 31 H 1.08992 * 109.47021 * 54.99347 * 4 2 1 32 32 H 1.08998 * 109.47006 * 174.99962 * 4 2 1 33 33 H 0.96996 * 120.00202 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.46930 * 305.00026 * 13 2 1 35 35 H 1.09000 * 109.47312 * 184.99970 * 13 2 1 36 36 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 37 37 H 1.07998 * 120.03713 * 0.02562 * 16 15 14 38 38 H 1.07994 * 119.96460 * 180.25714 * 17 16 15 39 39 H 1.09004 * 109.47371 * 29.97433 * 19 18 17 40 40 H 1.08999 * 109.47324 * 149.97674 * 19 18 17 41 41 H 1.09004 * 109.46832 * 300.00067 * 20 19 18 42 42 H 1.08999 * 109.47090 * 59.99834 * 20 19 18 43 43 H 1.09007 * 110.66913 * 278.16240 * 22 21 20 44 44 H 1.09000 * 110.66603 * 41.29238 * 22 21 20 45 45 H 1.09002 * 110.72658 * 204.22868 * 23 22 21 46 46 H 1.08997 * 110.72138 * 80.94459 * 23 22 21 47 47 H 1.09006 * 110.30993 * 263.03990 * 24 23 22 48 48 H 1.08999 * 110.39289 * 140.91792 * 24 23 22 49 49 H 1.09000 * 109.91731 * 333.50195 * 25 21 20 50 50 H 1.09000 * 109.92244 * 94.60292 * 25 21 20 51 51 H 1.08009 * 119.96012 * 179.97438 * 26 18 17 52 52 H 1.08005 * 120.03673 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0801 0.9741 2.3758 7 6 1.9925 -0.4023 3.7283 8 7 2.6747 -1.5199 3.8511 9 14 1.4978 0.5620 5.2496 10 1 0.7416 1.7737 4.8435 11 1 0.6434 -0.2873 6.1180 12 1 2.7156 0.9664 5.9970 13 6 2.0400 -0.7212 -1.2493 14 7 1.6523 0.0355 -2.4424 15 6 2.0079 -0.4298 -3.7105 16 6 2.7341 -1.6067 -3.8418 17 6 3.0798 -2.0664 -5.0974 18 6 2.7132 -1.3509 -6.2226 19 6 3.0968 -1.8528 -7.5908 20 6 4.4593 -1.2768 -7.9818 21 7 4.8330 -1.7656 -9.3157 22 6 3.7500 -1.5093 -10.2993 23 6 4.4841 -1.5810 -11.6618 24 6 5.8493 -0.9241 -11.3538 25 6 6.0213 -1.0500 -9.8287 26 6 1.9949 -0.1761 -6.0951 27 6 1.6408 0.2862 -4.8429 28 1 -0.3634 -1.0275 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6054 -1.7198 1.2950 32 1 3.1263 -0.7995 1.2054 33 1 2.9214 -1.8433 4.7317 34 1 1.6053 -1.7198 -1.2952 35 1 3.1263 -0.7994 -1.2057 36 1 1.1488 0.8596 -2.3517 37 1 3.0243 -2.1638 -2.9633 38 1 3.6408 -2.9834 -5.2005 39 1 3.1533 -2.9413 -7.5759 40 1 2.3473 -1.5378 -8.3167 41 1 4.4028 -0.1884 -7.9967 42 1 5.2088 -1.5919 -7.2558 43 1 2.9817 -2.2799 -10.2352 44 1 3.3179 -0.5203 -10.1467 45 1 3.9454 -1.0135 -12.4206 46 1 4.6163 -2.6168 -11.9746 47 1 5.8391 0.1254 -11.6481 48 1 6.6504 -1.4532 -11.8699 49 1 6.0809 -0.0589 -9.3787 50 1 6.9238 -1.6166 -9.5993 51 1 1.7105 0.3805 -6.9759 52 1 1.0802 1.2040 -4.7440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602491319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:35 Heat of formation + Delta-G solvation = -13.383128 kcal Electronic energy + Delta-G solvation = -25142.622828 eV Core-core repulsion = 21718.674529 eV Total energy + Delta-G solvation = -3423.948299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.60602 -39.75856 -38.19826 -35.99573 -34.59080 -33.57048 -31.77700 -31.23970 -29.79659 -29.01248 -28.00635 -26.78343 -24.93118 -24.16106 -23.28200 -22.03358 -21.67645 -21.03305 -20.85259 -18.56441 -18.16331 -17.18976 -16.90683 -16.73775 -16.46006 -16.06211 -15.93547 -15.47892 -15.03489 -14.87100 -14.64053 -14.48566 -14.27474 -14.14819 -14.10630 -13.86032 -13.54684 -13.36869 -13.24946 -12.90894 -12.80818 -12.69352 -12.34883 -12.29079 -12.24653 -12.08996 -12.03447 -11.99681 -11.81617 -11.65895 -11.55596 -11.39062 -11.18037 -11.03568 -10.70169 -10.55899 -9.77352 -9.35735 -8.19396 -8.18989 -6.28603 0.59770 0.73279 1.39473 1.40324 1.52660 2.39710 2.59297 2.94126 3.12741 3.14754 3.76206 3.83623 3.96947 4.03970 4.08423 4.15773 4.16200 4.22854 4.28459 4.36588 4.38783 4.40063 4.59850 4.63360 4.67243 4.68900 4.74640 4.76541 4.77887 4.90477 4.93544 4.96747 4.99603 5.06106 5.09873 5.18146 5.21145 5.22848 5.24136 5.29886 5.34154 5.43212 5.49090 5.51662 5.57781 5.74679 5.84658 5.87611 5.97436 6.05190 6.11249 6.24924 6.47608 6.86767 6.92770 7.39970 8.92888 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.036028 B = 0.001692 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.990136 B =16542.876936 C =16878.142322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.063 0.937 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.144 3.856 14 N -0.739 5.739 15 C 0.204 3.796 16 C -0.217 4.217 17 C -0.071 4.071 18 C -0.152 4.152 19 C -0.058 4.058 20 C 0.058 3.942 21 N -0.532 5.532 22 C 0.029 3.971 23 C -0.123 4.123 24 C -0.129 4.129 25 C 0.029 3.971 26 C -0.068 4.068 27 C -0.204 4.204 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.064 0.936 31 H -0.006 1.006 32 H -0.010 1.010 33 H 0.262 0.738 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.404 0.596 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.032 0.968 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.041 0.959 50 H 0.075 0.925 51 H 0.138 0.862 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 2.333 -31.507 31.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.104 4.104 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.787 3.213 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.207 1.207 13 C 0.019 3.981 14 N -0.369 5.369 15 C 0.099 3.901 16 C -0.240 4.240 17 C -0.089 4.089 18 C -0.155 4.155 19 C -0.095 4.095 20 C -0.070 4.070 21 N -0.257 5.257 22 C -0.098 4.098 23 C -0.161 4.161 24 C -0.168 4.168 25 C -0.098 4.098 26 C -0.087 4.087 27 C -0.226 4.226 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.012 0.988 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.240 0.760 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.059 0.941 50 H 0.094 0.906 51 H 0.155 0.845 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.601 1.553 -31.148 31.227 hybrid contribution -0.186 1.219 1.606 2.025 sum 1.415 2.771 -29.542 29.705 Atomic orbital electron populations 1.21626 0.94449 1.01006 1.01043 1.21208 0.96739 0.99156 0.93295 0.91897 1.18966 0.94458 0.94784 0.92204 1.21650 1.34547 1.08648 0.91937 0.91862 1.25944 0.95246 0.96076 1.02670 1.70104 1.40243 1.22851 1.24266 0.85446 0.78013 0.78885 0.78993 1.18496 1.20607 1.20694 1.21206 0.98145 0.94783 0.83975 1.44754 1.61890 1.28099 1.02148 1.18115 0.93197 0.93102 0.85637 1.20789 1.06376 0.98365 0.98436 1.20939 0.97547 0.99186 0.91266 1.19668 1.03541 0.97203 0.95073 1.20392 0.95831 1.00817 0.92501 1.22232 0.97101 0.96968 0.90677 1.64814 1.04716 1.54021 1.02100 1.23321 0.94629 1.00255 0.91629 1.22501 0.95409 1.01688 0.96477 1.22404 0.98449 1.01492 0.94413 1.22930 0.94432 0.96786 0.95698 1.20950 0.95957 0.95061 0.96737 1.20762 1.07994 1.02529 0.91357 0.94055 0.93248 0.91758 0.98790 0.99162 0.92930 0.93247 0.93745 0.76047 0.87175 0.85389 0.90811 0.90388 0.94939 0.91575 0.89622 0.93548 0.89790 0.90853 0.90882 0.90378 0.94058 0.90641 0.84454 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 8.88 71.98 0.64 -3.73 16 2 C -0.09 -3.32 2.37 -10.79 -0.03 -3.35 16 3 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 4 C 0.03 1.72 4.45 29.85 0.13 1.85 16 5 C -0.53 -29.33 8.41 25.60 0.22 -29.12 16 6 H 0.06 3.35 7.06 -2.91 -0.02 3.33 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 9 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 13 C 0.14 4.90 4.30 86.38 0.37 5.27 16 14 N -0.74 -21.12 5.46 -339.39 -1.85 -22.97 16 15 C 0.20 5.63 6.65 38.22 0.25 5.88 16 16 C -0.22 -6.10 9.31 22.40 0.21 -5.89 16 17 C -0.07 -1.70 9.69 22.25 0.22 -1.48 16 18 C -0.15 -3.18 5.14 -19.84 -0.10 -3.29 16 19 C -0.06 -0.96 5.00 29.85 0.15 -0.81 16 20 C 0.06 1.00 5.01 86.30 0.43 1.43 16 21 N -0.53 -8.54 5.40 -883.03 -4.76 -13.30 16 22 C 0.03 0.37 5.10 86.65 0.44 0.81 16 23 C -0.12 -1.23 7.06 31.80 0.22 -1.01 16 24 C -0.13 -1.34 6.93 31.47 0.22 -1.12 16 25 C 0.03 0.41 6.70 86.45 0.58 0.99 16 26 C -0.07 -1.40 9.69 22.25 0.22 -1.18 16 27 C -0.20 -4.73 9.90 22.40 0.22 -4.51 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.87 6.95 -2.39 -0.02 1.86 16 30 H 0.06 1.82 7.18 -2.38 -0.02 1.81 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.05 1.74 7.96 -2.38 -0.02 1.72 16 35 H 0.04 1.60 7.94 -2.39 -0.02 1.58 16 36 H 0.40 10.24 7.67 -92.71 -0.71 9.53 16 37 H 0.11 3.27 6.73 -2.91 -0.02 3.25 16 38 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.07 1.26 8.08 -2.39 -0.02 1.24 16 40 H 0.08 1.12 6.74 -2.39 -0.02 1.10 16 41 H 0.03 0.57 7.81 -2.39 -0.02 0.55 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.03 7.66 -2.38 -0.02 1.01 16 44 H 0.05 0.57 8.00 -2.39 -0.02 0.55 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.04 0.59 7.57 -2.39 -0.02 0.57 16 50 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 52 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -63.12 406.29 0.70 -62.42 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.15 Total: 23.03 kcal Atomic # 6 Polarization: -43.75 SS G_CDS: 4.85 Total: -38.89 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -6.33 Total: -92.57 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -63.12 0.70 -62.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602491319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.038 kcal (2) G-P(sol) polarization free energy of solvation -63.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds