Wall clock time and date at job start Tue Mar 31 2020 11:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47179 * 2 1 4 4 C 1.53000 * 109.47447 * 120.00160 * 2 1 3 5 5 C 1.50695 * 109.46879 * 295.00486 * 4 2 1 6 6 H 1.08000 * 120.00229 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00165 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00373 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99737 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46724 * 90.00294 * 9 7 5 11 11 H 1.48502 * 109.47208 * 210.00496 * 9 7 5 12 12 H 1.48499 * 109.46941 * 330.00455 * 9 7 5 13 13 C 1.53003 * 109.47138 * 240.00431 * 2 1 3 14 14 N 1.46496 * 109.47343 * 65.00193 * 13 2 1 15 15 C 1.40012 * 120.00270 * 180.02562 * 14 13 2 16 16 C 1.38666 * 120.09515 * 0.02562 * 15 14 13 17 17 C 1.38270 * 119.99808 * 179.97438 * 16 15 14 18 18 C 1.38252 * 120.19553 * 0.02562 * 17 16 15 19 19 C 1.38266 * 120.19202 * 359.71849 * 18 17 16 20 20 C 1.38664 * 119.99675 * 0.55754 * 19 18 17 21 21 N 1.40025 * 120.09553 * 179.72003 * 20 19 18 22 22 C 1.47999 * 110.99963 * 62.32295 * 21 20 19 23 23 C 1.50447 * 112.82647 * 191.34506 * 22 21 20 24 24 C 1.54311 * 108.49528 * 93.73156 * 23 22 21 25 25 C 1.45881 * 112.18227 * 281.45751 * 24 23 22 26 26 C 1.54306 * 112.18333 * 61.13015 * 25 24 23 27 27 C 1.47998 * 110.99727 * 293.60699 * 21 20 19 28 28 H 1.09005 * 109.46825 * 60.00089 * 1 2 3 29 29 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47113 * 300.00188 * 1 2 3 31 31 H 1.09000 * 109.46932 * 54.99695 * 4 2 1 32 32 H 1.08993 * 109.47428 * 175.00291 * 4 2 1 33 33 H 0.97001 * 120.00123 * 179.97438 * 8 7 5 34 34 H 1.08992 * 109.47140 * 304.99649 * 13 2 1 35 35 H 1.09001 * 109.46657 * 184.99798 * 13 2 1 36 36 H 0.97006 * 119.99986 * 359.97438 * 14 13 2 37 37 H 1.08000 * 119.99882 * 359.96236 * 16 15 14 38 38 H 1.08007 * 119.89721 * 179.97438 * 17 16 15 39 39 H 1.07999 * 119.90047 * 179.97438 * 18 17 16 40 40 H 1.07999 * 120.00440 * 180.30235 * 19 18 17 41 41 H 1.08996 * 108.81178 * 312.20936 * 22 21 20 42 42 H 1.09000 * 108.81113 * 70.48368 * 22 21 20 43 43 H 1.08994 * 109.62923 * 334.02773 * 23 22 21 44 44 H 1.09000 * 109.63109 * 213.42908 * 23 22 21 45 45 H 1.09006 * 108.93775 * 160.76800 * 24 23 22 46 46 H 1.08996 * 108.94552 * 42.15679 * 24 23 22 47 47 H 1.08993 * 108.94279 * 300.42767 * 25 24 23 48 48 H 1.09002 * 108.93839 * 181.82200 * 25 24 23 49 49 H 1.09004 * 109.63626 * 161.75537 * 26 25 24 50 50 H 1.09001 * 109.63430 * 41.16038 * 26 25 24 51 51 H 1.09004 * 108.80944 * 205.70147 * 27 21 20 52 52 H 1.09003 * 108.81661 * 323.96621 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 0.0569 2.4765 6 1 1.0806 0.9744 2.3756 7 6 1.9933 -0.4018 3.7282 8 7 1.6457 0.2776 4.7993 9 14 2.9638 -1.9884 3.9027 10 1 4.4172 -1.6847 3.8779 11 1 2.6165 -2.6421 5.1900 12 1 2.6292 -2.8994 2.7787 13 6 2.0400 -0.7212 -1.2493 14 7 1.6525 0.0355 -2.4424 15 6 2.0090 -0.4308 -3.7136 16 6 2.7283 -1.6089 -3.8455 17 6 3.0788 -2.0678 -5.1019 18 6 2.7146 -1.3551 -6.2291 19 6 1.9927 -0.1821 -6.1071 20 6 1.6420 0.2884 -4.8508 21 7 0.9160 1.4791 -4.7245 22 6 -0.4105 1.3626 -5.3705 23 6 -1.1145 2.6858 -5.5007 24 6 -0.7983 3.2737 -6.8920 25 6 0.5263 3.8826 -6.9446 26 6 1.6480 2.8631 -6.6559 27 6 1.7191 2.6397 -5.1698 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6054 -1.7198 1.2951 32 1 3.1263 -0.7994 1.2056 33 1 1.8930 -0.0453 5.6799 34 1 1.6055 -1.7197 -1.2953 35 1 3.1263 -0.7993 -1.2056 36 1 1.1483 0.8592 -2.3518 37 1 3.0150 -2.1679 -2.9670 38 1 3.6395 -2.9854 -5.2028 39 1 2.9913 -1.7177 -7.2081 40 1 1.7056 0.3697 -6.9899 41 1 -0.2809 0.9341 -6.3643 42 1 -1.0319 0.6906 -4.7786 43 1 -0.7607 3.3665 -4.7265 44 1 -2.1900 2.5397 -5.4007 45 1 -1.5451 4.0298 -7.1346 46 1 -0.8508 2.4764 -7.6333 47 1 0.5772 4.6831 -6.2067 48 1 0.6811 4.3075 -7.9363 49 1 2.6003 3.2552 -7.0133 50 1 1.4251 1.9214 -7.1575 51 1 1.3564 3.5336 -4.6623 52 1 2.7594 2.4762 -4.8883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602491496.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:53 Heat of formation + Delta-G solvation = 16.816857 kcal Electronic energy + Delta-G solvation = -27096.371943 eV Core-core repulsion = 23673.733213 eV Total energy + Delta-G solvation = -3422.638730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.48381 -38.47598 -36.65024 -34.59571 -33.90788 -32.35283 -32.05311 -29.84257 -29.06278 -27.36106 -26.29145 -25.68221 -25.09852 -22.88486 -21.93560 -21.35291 -20.50841 -19.91258 -19.15143 -17.25306 -16.89048 -16.65658 -16.04095 -15.66927 -15.39945 -14.65857 -14.45928 -14.32035 -14.10707 -13.79839 -13.74074 -13.38070 -13.27531 -13.10779 -12.94696 -12.64287 -12.41415 -12.20450 -12.05869 -11.89356 -11.80947 -11.49809 -11.35309 -11.02804 -10.90542 -10.87544 -10.83617 -10.63526 -10.45871 -10.42034 -10.09808 -9.79041 -9.67117 -9.57620 -9.11330 -8.68663 -8.53840 -8.40189 -7.08849 -6.04198 -4.01829 1.42807 1.76878 3.30585 3.38343 3.41379 3.64308 3.86093 3.93253 4.39715 4.45041 4.47787 4.69713 4.87688 4.92208 5.03713 5.11487 5.18177 5.20892 5.29206 5.39181 5.42020 5.46226 5.49994 5.59894 5.62558 5.65873 5.72194 5.75086 5.81457 5.82604 5.87084 5.89434 5.97843 6.01031 6.09018 6.10819 6.15682 6.32211 6.35191 6.40775 6.52461 6.70432 6.73255 6.87628 6.92576 6.98656 7.03392 7.21308 7.28380 7.41106 7.73467 7.81237 8.14466 8.53748 9.00661 9.58233 11.09093 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.002998 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.196460 B = 9337.768872 C =10517.996065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 H 0.067 0.933 4 C -0.006 4.006 5 C -0.515 4.515 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.904 5.904 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.122 3.878 14 N -0.726 5.726 15 C 0.248 3.752 16 C -0.201 4.201 17 C -0.072 4.072 18 C -0.186 4.186 19 C -0.104 4.104 20 C 0.004 3.996 21 N -0.505 5.505 22 C 0.070 3.930 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.153 4.153 27 C 0.066 3.934 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.018 0.982 32 H 0.012 0.988 33 H 0.262 0.738 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.408 0.592 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.056 0.944 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.074 0.926 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.580 2.278 -26.514 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.104 4.104 3 H 0.086 0.914 4 C -0.044 4.044 5 C -0.553 4.553 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.543 5.543 9 Si 0.705 3.295 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.002 4.002 14 N -0.353 5.353 15 C 0.140 3.860 16 C -0.224 4.224 17 C -0.091 4.091 18 C -0.207 4.207 19 C -0.125 4.125 20 C -0.094 4.094 21 N -0.226 5.226 22 C -0.056 4.056 23 C -0.160 4.160 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.192 4.192 27 C -0.060 4.060 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.245 0.755 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.093 0.907 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.636 2.276 -25.630 25.783 hybrid contribution 0.555 -0.680 -0.573 1.048 sum -1.081 1.596 -26.203 26.274 Atomic orbital electron populations 1.21714 0.95454 1.01038 1.00778 1.21214 0.96028 0.99842 0.93354 0.91431 1.19565 0.95663 0.96192 0.92974 1.21094 1.35581 1.09558 0.89047 0.90821 1.25021 0.95648 0.96911 0.95931 1.69909 1.47089 1.39270 0.98045 0.86811 0.80649 0.84459 0.77547 1.20346 1.21464 1.19001 1.21637 0.98830 0.95218 0.84471 1.44989 1.60367 1.28164 1.01824 1.17777 0.91597 0.91492 0.85123 1.20650 1.05879 0.97806 0.98112 1.20864 0.97601 0.98587 0.92028 1.20666 1.04657 0.97344 0.98079 1.21474 0.98010 0.96382 0.96591 1.18097 1.05587 0.94488 0.91240 1.59206 1.02654 1.01223 1.59548 1.21817 0.88931 0.97508 0.97357 1.21460 1.00144 0.97074 0.97342 1.20604 0.97298 1.00482 0.97402 1.20558 0.94862 0.98423 1.01655 1.22116 0.98971 0.99933 0.98187 1.21903 0.97506 0.93202 0.93422 0.94624 0.93677 0.91378 0.96418 0.96977 0.92774 0.92802 0.92792 0.75497 0.85905 0.86614 0.87122 0.86624 0.94588 0.91127 0.90448 0.91054 0.92189 0.92454 0.91906 0.92514 0.91428 0.91153 0.90727 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.88 37.16 0.33 -2.07 16 2 C -0.09 -1.62 2.37 -90.62 -0.22 -1.83 16 3 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 4 C -0.01 -0.14 3.52 -27.89 -0.10 -0.24 16 5 C -0.51 -14.27 8.96 -34.44 -0.31 -14.58 16 6 H 0.07 2.19 7.30 -52.49 -0.38 1.81 16 7 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 9 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.12 1.97 4.31 -4.04 -0.02 1.95 16 14 N -0.73 -10.65 5.46 -58.46 -0.32 -10.97 16 15 C 0.25 3.48 6.67 -83.50 -0.56 2.93 16 16 C -0.20 -2.69 9.31 -39.41 -0.37 -3.06 16 17 C -0.07 -0.84 10.04 -39.56 -0.40 -1.24 16 18 C -0.19 -2.09 10.04 -39.57 -0.40 -2.49 16 19 C -0.10 -1.19 8.36 -39.41 -0.33 -1.52 16 20 C 0.00 0.05 4.50 -83.50 -0.38 -0.32 16 21 N -0.50 -5.65 3.84 -172.10 -0.66 -6.31 16 22 C 0.07 0.70 4.89 -4.49 -0.02 0.68 16 23 C -0.12 -1.02 5.63 -27.32 -0.15 -1.17 16 24 C -0.12 -0.87 5.30 -29.41 -0.16 -1.03 16 25 C -0.12 -0.86 5.30 -29.42 -0.16 -1.01 16 26 C -0.15 -1.26 5.35 -27.32 -0.15 -1.41 16 27 C 0.07 0.66 5.04 -4.49 -0.02 0.64 16 28 H 0.03 0.56 7.18 -51.93 -0.37 0.19 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 31 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 32 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.05 0.86 7.95 -51.93 -0.41 0.45 16 35 H 0.05 0.87 7.96 -51.93 -0.41 0.45 16 36 H 0.41 6.01 6.94 -40.82 -0.28 5.73 16 37 H 0.12 1.62 6.74 -52.49 -0.35 1.27 16 38 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 1.17 4.94 -52.49 -0.26 0.91 16 41 H 0.04 0.36 5.44 -51.93 -0.28 0.07 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.70 7.08 -51.93 -0.37 0.34 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.42 7.52 -51.93 -0.39 0.03 16 47 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.62 4.12 -51.93 -0.21 0.40 16 51 H 0.07 0.73 6.59 -51.93 -0.34 0.38 16 52 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -29.14 383.65 -11.55 -40.69 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -8.97 Total: 4.83 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: -3.49 Total: -23.99 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -0.21 Total: -44.19 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.14 -11.55 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602491496.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.506 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds