Wall clock time and date at job start Tue Mar 31 2020 11:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47179 * 2 1 4 4 C 1.53000 * 109.47447 * 120.00160 * 2 1 3 5 5 C 1.50695 * 109.46879 * 295.00486 * 4 2 1 6 6 H 1.08000 * 120.00229 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00165 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00373 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99737 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46724 * 90.00294 * 9 7 5 11 11 H 1.48502 * 109.47208 * 210.00496 * 9 7 5 12 12 H 1.48499 * 109.46941 * 330.00455 * 9 7 5 13 13 C 1.53003 * 109.47138 * 240.00431 * 2 1 3 14 14 N 1.46496 * 109.47343 * 65.00193 * 13 2 1 15 15 C 1.40012 * 120.00270 * 180.02562 * 14 13 2 16 16 C 1.38666 * 120.09515 * 0.02562 * 15 14 13 17 17 C 1.38270 * 119.99808 * 179.97438 * 16 15 14 18 18 C 1.38252 * 120.19553 * 0.02562 * 17 16 15 19 19 C 1.38266 * 120.19202 * 359.71849 * 18 17 16 20 20 C 1.38664 * 119.99675 * 0.55754 * 19 18 17 21 21 N 1.40025 * 120.09553 * 179.72003 * 20 19 18 22 22 C 1.47999 * 110.99963 * 62.32295 * 21 20 19 23 23 C 1.50447 * 112.82647 * 191.34506 * 22 21 20 24 24 C 1.54311 * 108.49528 * 93.73156 * 23 22 21 25 25 C 1.45881 * 112.18227 * 281.45751 * 24 23 22 26 26 C 1.54306 * 112.18333 * 61.13015 * 25 24 23 27 27 C 1.47998 * 110.99727 * 293.60699 * 21 20 19 28 28 H 1.09005 * 109.46825 * 60.00089 * 1 2 3 29 29 H 1.09001 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47113 * 300.00188 * 1 2 3 31 31 H 1.09000 * 109.46932 * 54.99695 * 4 2 1 32 32 H 1.08993 * 109.47428 * 175.00291 * 4 2 1 33 33 H 0.97001 * 120.00123 * 179.97438 * 8 7 5 34 34 H 1.08992 * 109.47140 * 304.99649 * 13 2 1 35 35 H 1.09001 * 109.46657 * 184.99798 * 13 2 1 36 36 H 0.97006 * 119.99986 * 359.97438 * 14 13 2 37 37 H 1.08000 * 119.99882 * 359.96236 * 16 15 14 38 38 H 1.08007 * 119.89721 * 179.97438 * 17 16 15 39 39 H 1.07999 * 119.90047 * 179.97438 * 18 17 16 40 40 H 1.07999 * 120.00440 * 180.30235 * 19 18 17 41 41 H 1.08996 * 108.81178 * 312.20936 * 22 21 20 42 42 H 1.09000 * 108.81113 * 70.48368 * 22 21 20 43 43 H 1.08994 * 109.62923 * 334.02773 * 23 22 21 44 44 H 1.09000 * 109.63109 * 213.42908 * 23 22 21 45 45 H 1.09006 * 108.93775 * 160.76800 * 24 23 22 46 46 H 1.08996 * 108.94552 * 42.15679 * 24 23 22 47 47 H 1.08993 * 108.94279 * 300.42767 * 25 24 23 48 48 H 1.09002 * 108.93839 * 181.82200 * 25 24 23 49 49 H 1.09004 * 109.63626 * 161.75537 * 26 25 24 50 50 H 1.09001 * 109.63430 * 41.16038 * 26 25 24 51 51 H 1.09004 * 108.80944 * 205.70147 * 27 21 20 52 52 H 1.09003 * 108.81661 * 323.96621 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 0.0569 2.4765 6 1 1.0806 0.9744 2.3756 7 6 1.9933 -0.4018 3.7282 8 7 1.6457 0.2776 4.7993 9 14 2.9638 -1.9884 3.9027 10 1 4.4172 -1.6847 3.8779 11 1 2.6165 -2.6421 5.1900 12 1 2.6292 -2.8994 2.7787 13 6 2.0400 -0.7212 -1.2493 14 7 1.6525 0.0355 -2.4424 15 6 2.0090 -0.4308 -3.7136 16 6 2.7283 -1.6089 -3.8455 17 6 3.0788 -2.0678 -5.1019 18 6 2.7146 -1.3551 -6.2291 19 6 1.9927 -0.1821 -6.1071 20 6 1.6420 0.2884 -4.8508 21 7 0.9160 1.4791 -4.7245 22 6 -0.4105 1.3626 -5.3705 23 6 -1.1145 2.6858 -5.5007 24 6 -0.7983 3.2737 -6.8920 25 6 0.5263 3.8826 -6.9446 26 6 1.6480 2.8631 -6.6559 27 6 1.7191 2.6397 -5.1698 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6054 -1.7198 1.2951 32 1 3.1263 -0.7994 1.2056 33 1 1.8930 -0.0453 5.6799 34 1 1.6055 -1.7197 -1.2953 35 1 3.1263 -0.7993 -1.2056 36 1 1.1483 0.8592 -2.3518 37 1 3.0150 -2.1679 -2.9670 38 1 3.6395 -2.9854 -5.2028 39 1 2.9913 -1.7177 -7.2081 40 1 1.7056 0.3697 -6.9899 41 1 -0.2809 0.9341 -6.3643 42 1 -1.0319 0.6906 -4.7786 43 1 -0.7607 3.3665 -4.7265 44 1 -2.1900 2.5397 -5.4007 45 1 -1.5451 4.0298 -7.1346 46 1 -0.8508 2.4764 -7.6333 47 1 0.5772 4.6831 -6.2067 48 1 0.6811 4.3075 -7.9363 49 1 2.6003 3.2552 -7.0133 50 1 1.4251 1.9214 -7.1575 51 1 1.3564 3.5336 -4.6623 52 1 2.7594 2.4762 -4.8883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602491496.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:52 Heat of formation + Delta-G solvation = 2.334446 kcal Electronic energy + Delta-G solvation = -27096.999947 eV Core-core repulsion = 23673.733213 eV Total energy + Delta-G solvation = -3423.266734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.33793 -39.36453 -37.99794 -35.44983 -35.33531 -33.96960 -33.05124 -30.73410 -30.35395 -29.00131 -27.22794 -26.86806 -25.83654 -24.52401 -22.90242 -22.41238 -21.25595 -20.93978 -20.46151 -18.96400 -18.17599 -17.59408 -16.85662 -16.77480 -16.26716 -16.12002 -15.97222 -15.39891 -15.05069 -14.93474 -14.70312 -14.52305 -14.40792 -14.16588 -14.03020 -13.97971 -13.57755 -13.51372 -13.16107 -13.05224 -12.87382 -12.69831 -12.55431 -12.35021 -12.15818 -12.07517 -11.82400 -11.59901 -11.56311 -11.44841 -11.43961 -11.30805 -11.11432 -11.10504 -10.82283 -10.73308 -9.60074 -9.22817 -8.25859 -8.13527 -6.28531 0.50645 0.81840 1.37304 1.38866 1.50410 2.38218 2.63665 2.89889 2.99955 3.09701 3.75039 3.84198 3.97501 4.03397 4.11324 4.16566 4.19445 4.25516 4.34865 4.35728 4.41997 4.47656 4.58193 4.70511 4.73205 4.76360 4.79071 4.82969 4.84385 4.89655 4.91392 4.98245 5.05788 5.07367 5.18314 5.22842 5.24525 5.28155 5.33641 5.34345 5.37102 5.43883 5.48273 5.50612 5.62821 5.65485 5.70022 5.78826 6.02087 6.19678 6.28096 6.34898 6.74761 6.79431 7.02361 7.35113 8.90795 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016513 B = 0.002998 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.196460 B = 9337.768872 C =10517.996065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 H 0.055 0.945 4 C -0.004 4.004 5 C -0.519 4.519 6 H 0.035 0.965 7 C 0.002 3.998 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.244 1.244 13 C 0.140 3.860 14 N -0.731 5.731 15 C 0.224 3.776 16 C -0.214 4.214 17 C -0.077 4.077 18 C -0.183 4.183 19 C -0.108 4.108 20 C 0.002 3.998 21 N -0.515 5.515 22 C 0.073 3.927 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.115 4.115 26 C -0.147 4.147 27 C 0.069 3.931 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.022 0.978 32 H 0.018 0.982 33 H 0.264 0.736 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.406 0.594 37 H 0.121 0.879 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.039 0.961 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.074 0.926 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.922 0.994 -29.450 29.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.042 4.042 5 C -0.557 4.557 6 H 0.054 0.946 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.168 1.168 13 C 0.015 3.985 14 N -0.359 5.359 15 C 0.118 3.882 16 C -0.238 4.238 17 C -0.095 4.095 18 C -0.204 4.204 19 C -0.128 4.128 20 C -0.096 4.096 21 N -0.237 5.237 22 C -0.052 4.052 23 C -0.157 4.157 24 C -0.154 4.154 25 C -0.153 4.153 26 C -0.186 4.186 27 C -0.057 4.057 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.242 0.758 37 H 0.139 0.861 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.148 0.852 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.086 0.914 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.976 0.991 -28.614 28.648 hybrid contribution 0.312 -0.195 0.272 0.457 sum -0.664 0.796 -28.342 28.361 Atomic orbital electron populations 1.21603 0.94975 1.01163 1.00370 1.21037 0.96362 0.99017 0.93308 0.92690 1.19508 0.96028 0.95959 0.92663 1.21418 1.34459 1.08656 0.91163 0.94643 1.25985 0.97021 1.00892 0.95520 1.70068 1.49098 1.41599 0.98741 0.85712 0.79175 0.79992 0.78098 1.19359 1.21325 1.16762 1.21298 0.98651 0.94911 0.83630 1.44775 1.61219 1.28150 1.01761 1.18003 0.92821 0.92369 0.85024 1.20802 1.06219 0.97804 0.98932 1.21144 0.97477 0.99402 0.91491 1.21012 1.03478 0.96818 0.99065 1.21690 0.97800 0.96669 0.96627 1.18244 1.05340 0.94714 0.91307 1.59172 1.03112 1.01123 1.60304 1.21803 0.88243 0.98188 0.96993 1.21438 1.00337 0.96008 0.97918 1.20572 0.97574 1.00761 0.96494 1.20539 0.94432 0.98041 1.02245 1.22048 0.99779 1.00149 0.96615 1.21873 0.96383 0.92665 0.94756 0.92334 0.93207 0.94413 0.95937 0.96326 0.92679 0.92376 0.92750 0.75797 0.86124 0.84458 0.84756 0.85178 0.94272 0.92527 0.91370 0.90323 0.91156 0.92220 0.92066 0.91361 0.90803 0.91374 0.90791 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.52 8.88 71.98 0.64 -3.88 16 2 C -0.08 -2.97 2.37 -10.79 -0.03 -2.99 16 3 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.00 -0.17 3.52 29.85 0.10 -0.06 16 5 C -0.52 -29.53 8.96 25.60 0.23 -29.30 16 6 H 0.04 2.22 7.30 -2.91 -0.02 2.20 16 7 C 0.00 0.12 5.47 84.66 0.46 0.58 16 8 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 9 Si 0.95 44.24 27.47 68.60 1.88 46.12 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.24 -10.50 6.54 99.48 0.65 -9.84 16 13 C 0.14 4.36 4.31 86.38 0.37 4.73 16 14 N -0.73 -21.05 5.46 -338.86 -1.85 -22.90 16 15 C 0.22 6.09 6.67 38.23 0.26 6.34 16 16 C -0.21 -5.43 9.31 22.38 0.21 -5.23 16 17 C -0.08 -1.62 10.04 22.28 0.22 -1.39 16 18 C -0.18 -3.60 10.04 22.28 0.22 -3.37 16 19 C -0.11 -2.24 8.36 22.38 0.19 -2.05 16 20 C 0.00 0.06 4.50 38.23 0.17 0.23 16 21 N -0.51 -11.14 3.84 -698.41 -2.68 -13.82 16 22 C 0.07 1.39 4.89 85.27 0.42 1.81 16 23 C -0.12 -1.83 5.63 30.21 0.17 -1.66 16 24 C -0.12 -1.45 5.30 28.86 0.15 -1.29 16 25 C -0.12 -1.43 5.30 28.85 0.15 -1.28 16 26 C -0.15 -2.16 5.35 30.21 0.16 -2.00 16 27 C 0.07 1.32 5.04 85.27 0.43 1.75 16 28 H 0.06 1.84 7.18 -2.38 -0.02 1.83 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 31 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 32 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 33 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 34 H 0.06 1.77 7.95 -2.39 -0.02 1.75 16 35 H 0.05 1.69 7.96 -2.39 -0.02 1.67 16 36 H 0.41 11.88 6.94 -92.70 -0.64 11.24 16 37 H 0.12 3.03 6.74 -2.91 -0.02 3.01 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 40 H 0.13 2.29 4.94 -2.91 -0.01 2.28 16 41 H 0.04 0.71 5.44 -2.39 -0.01 0.70 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.18 7.08 -2.39 -0.02 1.17 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.06 0.73 7.52 -2.39 -0.02 0.71 16 47 H 0.06 0.80 7.52 -2.39 -0.02 0.78 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 50 H 0.07 1.04 4.12 -2.39 -0.01 1.03 16 51 H 0.07 1.40 6.59 -2.38 -0.02 1.39 16 52 H 0.05 1.17 7.84 -2.39 -0.02 1.15 16 Total: -1.00 -63.86 383.65 2.39 -61.48 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.20 Total: 28.06 kcal Atomic # 6 Polarization: -43.61 SS G_CDS: 4.54 Total: -39.07 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -4.23 Total: -96.58 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Total: -63.86 2.39 -61.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602491496.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.812 kcal (2) G-P(sol) polarization free energy of solvation -63.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds