Wall clock time and date at job start Tue Mar 31 2020 10:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38127 * 120.03184 * 2 1 4 4 C 1.38274 * 120.06952 * 179.74734 * 3 2 1 5 5 C 1.38304 * 120.15240 * 0.54558 * 4 3 2 6 6 C 1.50698 * 119.96436 * 179.72316 * 5 4 3 7 7 N 1.46905 * 109.47165 * 269.73103 * 6 5 4 8 8 C 1.48560 * 110.99577 * 169.99909 * 7 6 5 9 9 C 1.54378 * 104.69549 * 200.89794 * 8 7 6 10 10 C 1.54571 * 104.91190 * 23.88545 * 9 8 7 11 11 C 1.48555 * 110.99889 * 54.58389 * 7 6 5 12 12 C 1.38085 * 120.07272 * 359.45849 * 5 4 3 13 13 C 1.38889 * 120.04157 * 180.02562 * 2 1 3 14 14 N 1.39669 * 120.07297 * 0.02562 * 13 2 1 15 15 C 1.46501 * 120.00068 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.47456 * 179.97438 * 15 14 13 17 17 H 1.09006 * 109.46289 * 55.00515 * 16 15 14 18 18 C 1.52995 * 109.47484 * 295.00439 * 16 15 14 19 19 C 1.52998 * 109.46950 * 175.00144 * 16 15 14 20 20 C 1.50702 * 109.46810 * 185.00472 * 19 16 15 21 21 H 1.08004 * 120.00343 * 0.02562 * 20 19 16 22 22 C 1.37880 * 120.00179 * 179.97438 * 20 19 16 23 23 N 1.31513 * 119.99582 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00021 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46850 * 90.00660 * 24 22 20 26 26 H 1.48499 * 109.46969 * 209.99888 * 24 22 20 27 27 H 1.48492 * 109.47629 * 330.00322 * 24 22 20 28 28 H 1.08996 * 109.47469 * 269.97444 * 1 2 3 29 29 H 1.08996 * 109.47650 * 29.97832 * 1 2 3 30 30 H 1.09003 * 109.46802 * 149.97922 * 1 2 3 31 31 H 1.07997 * 119.96904 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.92199 * 180.29339 * 4 3 2 33 33 H 1.09000 * 109.46851 * 149.73116 * 6 5 4 34 34 H 1.08997 * 109.46905 * 29.73252 * 6 5 4 35 35 H 1.09002 * 110.41441 * 319.73871 * 8 7 6 36 36 H 1.09002 * 110.41248 * 82.06172 * 8 7 6 37 37 H 1.09006 * 110.32557 * 142.80924 * 9 8 7 38 38 H 1.08996 * 110.32821 * 265.02105 * 9 8 7 39 39 H 1.08995 * 110.29758 * 241.08109 * 10 9 8 40 40 H 1.09004 * 110.40408 * 118.93657 * 10 9 8 41 41 H 1.09005 * 110.41154 * 277.81401 * 11 7 6 42 42 H 1.08998 * 110.41848 * 40.13562 * 11 7 6 43 43 H 1.07998 * 120.03966 * 180.29325 * 12 5 4 44 44 H 0.96995 * 120.00507 * 359.97438 * 14 13 2 45 45 H 1.08997 * 109.47279 * 300.00719 * 15 14 13 46 46 H 1.09009 * 109.46661 * 60.00003 * 15 14 13 47 47 H 1.08993 * 109.47414 * 179.97438 * 18 16 15 48 48 H 1.08998 * 109.47056 * 299.99882 * 18 16 15 49 49 H 1.09007 * 109.46781 * 59.99422 * 18 16 15 50 50 H 1.09001 * 109.47362 * 305.00283 * 19 16 15 51 51 H 1.08997 * 109.47553 * 65.00765 * 19 16 15 52 52 H 0.96999 * 119.99717 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5810 1.1967 0.0053 5 6 4.2765 0.0013 -0.0008 6 6 5.7835 0.0073 -0.0013 7 7 6.2727 0.0095 -1.3865 8 6 7.7369 0.2562 -1.4335 9 6 8.0035 0.7588 -2.8687 10 6 6.6524 1.3399 -3.3440 11 6 5.6876 1.1376 -2.1559 12 6 3.5916 -1.1977 -0.0009 13 6 2.2023 -1.2023 -0.0005 14 7 1.5063 -2.4133 -0.0016 15 6 2.2414 -3.6806 -0.0028 16 6 1.2495 -4.8455 -0.0031 17 1 0.5649 -4.7394 -0.8448 18 6 0.4551 -4.8395 1.3044 19 6 2.0130 -6.1653 -0.1300 20 6 1.0324 -7.3029 -0.2540 21 1 -0.0292 -7.1044 -0.2438 22 6 1.4905 -8.5971 -0.3816 23 7 2.7832 -8.8388 -0.3945 24 14 0.2750 -10.0073 -0.5346 25 1 -0.0355 -10.2397 -1.9680 26 1 0.8679 -11.2373 0.0491 27 1 -0.9734 -9.6660 0.1934 28 1 -0.3634 -0.0005 1.0276 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6583 2.1311 0.0004 32 1 4.1191 2.1331 0.0101 33 1 6.1505 -0.8813 0.5122 34 1 6.1434 0.8986 0.5126 35 1 8.0177 1.0175 -0.7058 36 1 8.2843 -0.6676 -1.2465 37 1 8.7697 1.5341 -2.8621 38 1 8.3069 -0.0690 -3.5095 39 1 6.2944 0.7975 -4.2190 40 1 6.7543 2.4008 -3.5726 41 1 4.6919 0.8770 -2.5149 42 1 5.6457 2.0363 -1.5406 43 1 4.1353 -2.1309 -0.0009 44 1 0.5364 -2.4153 -0.0016 45 1 2.8682 -3.7362 -0.8927 46 1 2.8682 -3.7378 0.8873 47 1 -0.2518 -5.6691 1.3039 48 1 1.1397 -4.9455 2.1459 49 1 -0.0888 -3.8991 1.3947 50 1 2.6475 -6.1343 -1.0158 51 1 2.6316 -6.3137 0.7550 52 1 3.1054 -9.7493 -0.4838 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602496933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:50 Heat of formation + Delta-G solvation = 5.218419 kcal Electronic energy + Delta-G solvation = -26286.494033 eV Core-core repulsion = 22863.352357 eV Total energy + Delta-G solvation = -3423.141676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.95497 -38.71048 -36.63746 -34.42518 -33.36291 -31.98756 -31.36041 -29.19291 -28.90897 -27.55762 -26.81838 -25.83203 -24.34046 -23.13274 -21.54079 -21.15126 -20.89210 -20.47880 -19.07644 -16.69766 -16.56166 -16.19507 -15.94856 -15.68241 -15.15972 -14.61268 -14.52025 -14.43704 -13.98701 -13.74052 -13.66591 -13.31553 -13.02670 -12.77167 -12.68646 -12.44353 -12.35590 -12.14784 -12.02496 -11.75645 -11.62013 -11.52136 -11.36920 -11.27913 -11.04054 -10.93370 -10.88007 -10.70633 -10.67680 -10.40219 -10.31527 -9.98875 -9.60946 -9.29580 -9.04433 -8.69303 -8.40083 -8.36722 -7.07301 -6.01226 -4.03071 1.50414 1.80823 3.30817 3.37426 3.39900 3.76661 3.79081 4.17510 4.44928 4.48397 4.51476 4.78713 4.87008 4.93299 5.07134 5.15617 5.17255 5.30979 5.34382 5.34632 5.46560 5.49744 5.56398 5.57245 5.62809 5.64453 5.65014 5.71919 5.82273 5.85171 5.87072 5.91100 5.92519 5.97721 6.07080 6.21209 6.23627 6.38046 6.44703 6.52406 6.66489 6.69315 6.80671 6.84017 6.90150 7.00718 7.03818 7.10709 7.63013 7.64270 7.76916 7.97529 8.04041 8.39953 9.02582 9.60578 11.10180 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012902 B = 0.002752 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.631349 B =10172.739727 C =11827.196097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.172 4.172 3 C -0.074 4.074 4 C -0.181 4.181 5 C -0.041 4.041 6 C 0.085 3.915 7 N -0.503 5.503 8 C 0.030 3.970 9 C -0.124 4.124 10 C -0.127 4.127 11 C 0.036 3.964 12 C -0.173 4.173 13 C 0.226 3.774 14 N -0.739 5.739 15 C 0.126 3.874 16 C -0.095 4.095 17 H 0.061 0.939 18 C -0.132 4.132 19 C 0.031 3.969 20 C -0.516 4.516 21 H 0.056 0.944 22 C 0.057 3.943 23 N -0.894 5.894 24 Si 0.890 3.110 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.124 0.876 44 H 0.397 0.603 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.046 0.954 49 H 0.029 0.971 50 H 0.017 0.983 51 H 0.018 0.982 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 23.690 -0.802 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.177 4.177 3 C -0.093 4.093 4 C -0.201 4.201 5 C -0.042 4.042 6 C -0.042 4.042 7 N -0.227 5.227 8 C -0.098 4.098 9 C -0.162 4.162 10 C -0.165 4.165 11 C -0.092 4.092 12 C -0.197 4.197 13 C 0.121 3.879 14 N -0.368 5.368 15 C 0.002 3.998 16 C -0.114 4.114 17 H 0.079 0.921 18 C -0.189 4.189 19 C -0.007 4.007 20 C -0.554 4.554 21 H 0.074 0.926 22 C -0.145 4.145 23 N -0.534 5.534 24 Si 0.718 3.282 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.061 0.939 43 H 0.141 0.859 44 H 0.233 0.767 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.065 0.935 49 H 0.048 0.952 50 H 0.036 0.964 51 H 0.037 0.963 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.228 22.804 -1.021 23.418 hybrid contribution -0.713 -0.134 0.309 0.789 sum 4.514 22.670 -0.713 23.127 Atomic orbital electron populations 1.20559 0.91771 1.02064 1.01624 1.19323 0.95511 0.91876 1.10983 1.20614 0.93782 0.96413 0.98475 1.20608 0.93970 0.96676 1.08892 1.19318 0.93932 0.92861 0.98123 1.21206 0.91832 1.01454 0.89744 1.65511 1.03994 1.41641 1.11507 1.23151 0.89668 1.00343 0.96665 1.22337 0.97242 1.00514 0.96110 1.22367 0.95008 1.00567 0.98546 1.23112 0.99219 0.92354 0.94506 1.20503 0.91929 0.98144 1.09077 1.17709 0.91329 0.85872 0.93031 1.45080 1.08310 1.02820 1.80558 1.21627 0.95323 0.82220 1.00601 1.21431 0.96880 0.95624 0.97501 0.92076 1.21719 1.00028 0.99735 0.97408 1.19073 0.95220 0.89055 0.97352 1.21189 0.92958 0.91404 1.49882 0.92599 1.25013 0.95059 0.98933 0.95449 1.69961 1.12522 1.20386 1.50501 0.86621 0.81339 0.81983 0.78218 1.20706 1.21254 1.19938 0.91929 0.91913 0.92282 0.86770 0.87394 0.89741 0.94018 0.94017 0.90003 0.91547 0.90939 0.91029 0.91610 0.89870 0.93929 0.85851 0.76694 0.92489 0.92682 0.91785 0.93468 0.95183 0.96420 0.96317 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 9.57 36.00 0.34 -0.75 16 2 C -0.17 -2.21 5.90 -104.42 -0.62 -2.83 16 3 C -0.07 -0.87 9.70 -39.61 -0.38 -1.25 16 4 C -0.18 -2.12 8.39 -39.54 -0.33 -2.45 16 5 C -0.04 -0.53 4.65 -104.66 -0.49 -1.01 16 6 C 0.09 0.96 5.22 -4.97 -0.03 0.93 16 7 N -0.50 -5.72 5.48 -231.41 -1.27 -6.99 16 8 C 0.03 0.27 6.48 -2.18 -0.01 0.26 16 9 C -0.12 -1.01 7.02 -25.18 -0.18 -1.19 16 10 C -0.13 -1.09 7.01 -25.18 -0.18 -1.27 16 11 C 0.04 0.37 4.96 -2.19 -0.01 0.36 16 12 C -0.17 -2.53 8.96 -39.38 -0.35 -2.88 16 13 C 0.23 3.31 6.63 -83.79 -0.56 2.75 16 14 N -0.74 -11.08 5.36 -58.63 -0.31 -11.39 16 15 C 0.13 2.16 4.30 -4.04 -0.02 2.14 16 16 C -0.10 -1.87 2.37 -90.62 -0.22 -2.08 16 17 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.13 -2.39 8.88 37.16 0.33 -2.06 16 19 C 0.03 0.76 4.45 -27.88 -0.12 0.64 16 20 C -0.52 -14.16 8.41 -34.44 -0.29 -14.45 16 21 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 22 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 23 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 24 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 30 H 0.06 0.63 6.55 -51.93 -0.34 0.29 16 31 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.11 1.08 7.41 -52.49 -0.39 0.70 16 33 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.04 0.42 7.82 -51.93 -0.41 0.02 16 35 H 0.04 0.35 7.82 -51.93 -0.41 -0.05 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.98 7.75 -51.93 -0.40 0.57 16 42 H 0.04 0.41 7.13 -51.93 -0.37 0.04 16 43 H 0.12 1.89 6.73 -52.49 -0.35 1.54 16 44 H 0.40 5.53 5.65 -40.82 -0.23 5.30 16 45 H 0.06 1.02 7.95 -51.93 -0.41 0.61 16 46 H 0.05 0.96 7.95 -51.92 -0.41 0.54 16 47 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.03 0.46 7.18 -51.93 -0.37 0.08 16 50 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -29.44 401.23 -12.47 -41.91 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -9.45 Total: 3.49 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -3.20 Total: -23.65 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.85 Total: -44.26 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.44 -12.47 -41.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602496933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.133 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds