Wall clock time and date at job start Tue Mar 31 2020 10:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47190 * 2 1 4 4 C 1.53002 * 109.47149 * 119.99892 * 2 1 3 5 5 C 1.50699 * 109.47207 * 294.99743 * 4 2 1 6 6 H 1.08003 * 119.99832 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00113 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00063 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00165 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47033 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47618 * 119.99845 * 9 7 5 12 12 H 1.48498 * 109.47074 * 240.00225 * 9 7 5 13 13 C 1.53001 * 109.47330 * 239.99740 * 2 1 3 14 14 N 1.46507 * 109.46637 * 64.99739 * 13 2 1 15 15 C 1.39672 * 119.99644 * 179.97438 * 14 13 2 16 16 C 1.38994 * 120.03509 * 0.30259 * 15 14 13 17 17 C 1.38136 * 120.06941 * 180.25602 * 16 15 14 18 18 C 1.38185 * 120.14750 * 359.43991 * 17 16 15 19 19 C 1.38950 * 120.07172 * 0.28153 * 18 17 16 20 20 N 1.39667 * 120.03525 * 179.97438 * 19 18 17 21 21 C 1.46847 * 110.99961 * 124.21185 * 20 19 18 22 22 C 1.53036 * 109.52327 * 174.15886 * 21 20 19 23 23 C 1.53127 * 109.27765 * 59.17720 * 22 21 20 24 24 C 1.52997 * 109.57423 * 182.41107 * 23 22 21 25 25 C 1.53116 * 109.16145 * 302.34608 * 23 22 21 26 26 C 1.46842 * 111.00029 * 359.97438 * 20 19 18 27 27 C 1.38750 * 120.03370 * 179.97438 * 15 14 13 28 28 H 1.08995 * 109.47329 * 60.00245 * 1 2 3 29 29 H 1.09002 * 109.46770 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47164 * 299.99516 * 1 2 3 31 31 H 1.09000 * 109.47229 * 55.00420 * 4 2 1 32 32 H 1.09005 * 109.47042 * 174.99839 * 4 2 1 33 33 H 0.97000 * 119.99951 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.47289 * 305.00275 * 13 2 1 35 35 H 1.08995 * 109.47265 * 184.99711 * 13 2 1 36 36 H 0.96993 * 120.00374 * 0.02562 * 14 13 2 37 37 H 1.08001 * 119.97033 * 359.97438 * 16 15 14 38 38 H 1.08002 * 119.92917 * 179.72550 * 17 16 15 39 39 H 1.07991 * 119.96298 * 180.25955 * 18 17 16 40 40 H 1.08998 * 109.46251 * 294.17443 * 21 20 19 41 41 H 1.09001 * 109.45988 * 54.14213 * 21 20 19 42 42 H 1.09005 * 109.50414 * 299.23837 * 22 21 20 43 43 H 1.09001 * 109.53519 * 179.13847 * 22 21 20 44 44 H 1.08995 * 109.52250 * 62.25274 * 23 22 21 45 45 H 1.08998 * 109.47281 * 179.71755 * 24 23 22 46 46 H 1.09012 * 109.46859 * 299.71556 * 24 23 22 47 47 H 1.08995 * 109.47369 * 59.71120 * 24 23 22 48 48 H 1.08999 * 109.50500 * 297.71589 * 25 23 22 49 49 H 1.08994 * 109.50266 * 177.59586 * 25 23 22 50 50 H 1.09000 * 109.46549 * 305.85434 * 26 20 19 51 51 H 1.09000 * 109.46496 * 65.82577 * 26 20 19 52 52 H 1.07992 * 120.07757 * 0.04818 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6756 -1.5192 3.8513 9 14 1.4977 0.5622 5.2497 10 1 0.7415 1.7740 4.8434 11 1 0.6434 -0.2870 6.1181 12 1 2.7155 0.9668 5.9970 13 6 2.0400 -0.7213 -1.2492 14 7 1.6524 0.0353 -2.4424 15 6 2.0089 -0.4294 -3.7103 16 6 2.7260 -1.6129 -3.8413 17 6 3.0836 -2.0704 -5.0947 18 6 2.7199 -1.3598 -6.2227 19 6 1.9980 -0.1790 -6.0990 20 7 1.6313 0.5388 -7.2396 21 6 0.1789 0.7507 -7.2837 22 6 -0.1696 1.6607 -8.4637 23 6 0.3097 1.0088 -9.7637 24 6 0.0186 1.9403 -10.9420 25 6 1.8169 0.7548 -9.6726 26 6 2.1083 -0.1287 -8.4575 27 6 1.6417 0.2863 -4.8409 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6054 -1.7198 1.2952 32 1 3.1264 -0.7995 1.2056 33 1 2.9228 -1.8421 4.7319 34 1 1.6054 -1.7199 -1.2951 35 1 3.1263 -0.7995 -1.2056 36 1 1.1488 0.8593 -2.3518 37 1 3.0079 -2.1730 -2.9620 38 1 3.6446 -2.9880 -5.1935 39 1 2.9974 -1.7225 -7.2013 40 1 -0.3246 -0.2086 -7.4039 41 1 -0.1482 1.2186 -6.3552 42 1 0.3225 2.6251 -8.3373 43 1 -1.2491 1.8057 -8.5058 44 1 -0.2110 0.0625 -9.9102 45 1 0.3649 1.4769 -11.8658 46 1 -1.0546 2.1206 -11.0061 47 1 0.5377 2.8871 -10.7936 48 1 2.3403 1.7048 -9.5651 49 1 2.1566 0.2519 -10.5780 50 1 3.1822 -0.2993 -8.3813 51 1 1.5962 -1.0840 -8.5724 52 1 1.0806 1.2037 -4.7421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602497834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:07 Heat of formation + Delta-G solvation = -11.782161 kcal Electronic energy + Delta-G solvation = -25896.246808 eV Core-core repulsion = 22472.367932 eV Total energy + Delta-G solvation = -3423.878876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31670 -39.56898 -37.97527 -36.05541 -34.93404 -33.81619 -32.17150 -31.12238 -30.04206 -28.69947 -27.97368 -27.11296 -24.95307 -24.54446 -23.61896 -22.65006 -21.54196 -20.81979 -20.49530 -18.63982 -18.55283 -17.04972 -16.72984 -16.61885 -16.27999 -16.09198 -15.76358 -15.49612 -15.23042 -15.01855 -14.66961 -14.54549 -14.39971 -14.19608 -14.15274 -13.85004 -13.42556 -13.40231 -13.29561 -12.86356 -12.80261 -12.70315 -12.57433 -12.36809 -12.29139 -12.13373 -12.08027 -11.95983 -11.72032 -11.61095 -11.25467 -11.18770 -11.13270 -11.02655 -10.95716 -10.55233 -10.40746 -8.82913 -8.25496 -8.18699 -6.27748 0.56706 0.76677 1.39676 1.40535 1.52854 2.39169 2.49955 2.80648 3.09575 3.15265 3.79644 3.83744 3.89807 4.02653 4.09236 4.17349 4.23861 4.31046 4.35131 4.36219 4.43261 4.48243 4.56216 4.63182 4.69244 4.73714 4.76893 4.79215 4.80675 4.86735 4.90904 4.92892 4.99187 5.03219 5.11895 5.20224 5.22693 5.26258 5.29805 5.36331 5.42634 5.43896 5.47740 5.51699 5.54542 5.70298 5.72991 5.76550 5.85519 6.14660 6.24815 6.37171 6.51307 6.87331 6.91790 7.40599 8.93449 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.029471 B = 0.002016 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.869547 B =13888.987920 C =14625.646183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.144 3.856 14 N -0.737 5.737 15 C 0.232 3.768 16 C -0.243 4.243 17 C -0.049 4.049 18 C -0.239 4.239 19 C 0.151 3.849 20 N -0.495 5.495 21 C 0.059 3.941 22 C -0.109 4.109 23 C -0.095 4.095 24 C -0.142 4.142 25 C -0.109 4.109 26 C 0.050 3.950 27 C -0.231 4.231 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.048 0.952 31 H -0.006 1.006 32 H -0.010 1.010 33 H 0.262 0.738 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.403 0.597 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.082 0.918 51 H 0.046 0.954 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 4.075 -30.484 31.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.574 5.574 9 Si 0.786 3.214 10 H -0.185 1.185 11 H -0.206 1.206 12 H -0.207 1.207 13 C 0.020 3.980 14 N -0.366 5.366 15 C 0.126 3.874 16 C -0.267 4.267 17 C -0.068 4.068 18 C -0.262 4.262 19 C 0.052 3.948 20 N -0.210 5.210 21 C -0.066 4.066 22 C -0.147 4.147 23 C -0.113 4.113 24 C -0.200 4.200 25 C -0.147 4.147 26 C -0.076 4.076 27 C -0.256 4.256 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.013 0.987 32 H 0.009 0.991 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.238 0.762 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.065 0.935 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.463 4.357 -30.248 30.884 hybrid contribution -0.308 -0.301 1.506 1.566 sum -4.771 4.056 -28.742 29.416 Atomic orbital electron populations 1.21626 0.94475 1.01029 1.00999 1.21208 0.96723 0.99150 0.93330 0.91973 1.18965 0.94490 0.94791 0.92134 1.21645 1.34495 1.08615 0.91932 0.91902 1.25945 0.95295 0.96101 1.02663 1.70104 1.40204 1.22873 1.24246 0.85452 0.78011 0.78882 0.79026 1.18541 1.20593 1.20698 1.21223 0.98255 0.94790 0.83759 1.44762 1.61645 1.28055 1.02145 1.17828 0.91897 0.92473 0.85158 1.20759 1.08387 0.98859 0.98649 1.20957 0.95888 0.98772 0.91210 1.21200 1.08951 0.96439 0.99561 1.18726 0.95460 0.90431 0.90182 1.58988 1.14447 1.46178 1.01426 1.22243 0.84627 0.99355 1.00417 1.21684 1.01498 0.98597 0.92919 1.21208 0.95819 0.99312 0.95005 1.21771 1.01753 0.99173 0.97275 1.21678 0.96181 1.00144 0.96659 1.22328 1.00939 0.95921 0.88440 1.20128 1.12100 1.03287 0.90076 0.91850 0.93979 0.93252 0.98713 0.99116 0.92936 0.93038 0.93602 0.76156 0.86980 0.84451 0.84463 0.94319 0.90528 0.91470 0.90070 0.91309 0.92033 0.92271 0.92741 0.91623 0.89714 0.89943 0.93532 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.40 8.88 71.98 0.64 -3.76 16 2 C -0.09 -3.35 2.37 -10.79 -0.03 -3.37 16 3 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.03 1.74 4.45 29.85 0.13 1.87 16 5 C -0.53 -29.34 8.41 25.60 0.22 -29.13 16 6 H 0.06 3.34 7.06 -2.91 -0.02 3.32 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 9 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 10 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.14 4.96 4.30 86.38 0.37 5.33 16 14 N -0.74 -21.69 5.46 -339.47 -1.85 -23.54 16 15 C 0.23 6.71 6.65 38.20 0.25 6.97 16 16 C -0.24 -6.97 9.31 22.43 0.21 -6.76 16 17 C -0.05 -1.19 10.03 22.23 0.22 -0.97 16 18 C -0.24 -5.43 8.82 22.43 0.20 -5.23 16 19 C 0.15 3.61 5.64 38.20 0.22 3.82 16 20 N -0.50 -9.79 4.70 -695.49 -3.27 -13.06 16 21 C 0.06 1.01 5.26 86.33 0.45 1.46 16 22 C -0.11 -1.41 5.38 30.65 0.16 -1.25 16 23 C -0.09 -1.05 2.79 -10.71 -0.03 -1.08 16 24 C -0.14 -1.26 9.20 71.98 0.66 -0.60 16 25 C -0.11 -1.30 5.38 30.64 0.16 -1.13 16 26 C 0.05 0.78 4.15 86.33 0.36 1.13 16 27 C -0.23 -6.03 9.00 22.53 0.20 -5.83 16 28 H 0.06 1.82 7.18 -2.39 -0.02 1.81 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.88 6.95 -2.39 -0.02 1.86 16 31 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.05 1.81 7.94 -2.38 -0.02 1.79 16 35 H 0.05 1.66 7.96 -2.39 -0.02 1.64 16 36 H 0.40 10.70 7.67 -92.71 -0.71 9.99 16 37 H 0.11 3.33 6.72 -2.91 -0.02 3.31 16 38 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.14 2.50 5.79 -2.92 -0.02 2.48 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 1.38 6.70 -2.39 -0.02 1.37 16 42 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 47 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.08 1.27 6.98 -2.39 -0.02 1.26 16 51 H 0.05 0.70 7.73 -2.39 -0.02 0.68 16 52 H 0.12 3.00 7.15 -2.91 -0.02 2.98 16 Total: -1.00 -63.22 397.81 2.22 -60.99 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.16 Total: 23.98 kcal Atomic # 6 Polarization: -43.08 SS G_CDS: 4.87 Total: -38.21 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -4.84 Total: -92.91 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -63.22 2.22 -60.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602497834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.212 kcal (2) G-P(sol) polarization free energy of solvation -63.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds