Wall clock time and date at job start Tue Mar 31 2020 10:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46839 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47356 * 119.99073 * 9 7 5 12 12 H 1.48497 * 109.47175 * 239.99531 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46499 * 109.46679 * 294.99474 * 13 2 1 15 15 C 1.39672 * 119.99699 * 179.97438 * 14 13 2 16 16 C 1.38993 * 120.03680 * 359.73447 * 15 14 13 17 17 C 1.38141 * 120.06972 * 179.69396 * 16 15 14 18 18 C 1.38170 * 120.14678 * 0.59895 * 17 16 15 19 19 C 1.38952 * 120.07633 * 359.67748 * 18 17 16 20 20 N 1.39663 * 120.03701 * 180.02562 * 19 18 17 21 21 C 1.46844 * 111.00571 * 124.23102 * 20 19 18 22 22 C 1.53038 * 109.52897 * 174.15544 * 21 20 19 23 23 C 1.53125 * 109.27420 * 59.17760 * 22 21 20 24 24 C 1.53000 * 109.57119 * 182.40699 * 23 22 21 25 25 C 1.53117 * 109.16297 * 302.34993 * 23 22 21 26 26 C 1.46850 * 111.00087 * 0.02562 * 20 19 18 27 27 C 1.38750 * 120.03572 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 32 32 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 33 33 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 35 35 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 36 36 H 0.96996 * 120.00184 * 0.02562 * 14 13 2 37 37 H 1.07999 * 119.96156 * 359.97438 * 16 15 14 38 38 H 1.07996 * 119.91982 * 180.27707 * 17 16 15 39 39 H 1.08001 * 119.95921 * 179.70039 * 18 17 16 40 40 H 1.09003 * 109.46422 * 294.17740 * 21 20 19 41 41 H 1.09002 * 109.46207 * 54.13730 * 21 20 19 42 42 H 1.08998 * 109.50248 * 299.24037 * 22 21 20 43 43 H 1.08998 * 109.53665 * 179.13684 * 22 21 20 44 44 H 1.09003 * 109.51847 * 62.25325 * 23 22 21 45 45 H 1.09005 * 109.46559 * 179.71198 * 24 23 22 46 46 H 1.08997 * 109.47538 * 299.71668 * 24 23 22 47 47 H 1.08995 * 109.46894 * 59.72257 * 24 23 22 48 48 H 1.09009 * 109.49987 * 297.71251 * 25 23 22 49 49 H 1.09001 * 109.50284 * 177.59728 * 25 23 22 50 50 H 1.09000 * 109.46098 * 305.85428 * 26 20 19 51 51 H 1.08995 * 109.46121 * 65.82686 * 26 20 19 52 52 H 1.08004 * 120.07573 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 0.7424 1.7744 -4.8434 11 1 2.7172 0.9667 -5.9965 12 1 0.6443 -0.2857 -6.1184 13 6 2.0400 -0.7213 1.2493 14 7 1.6525 0.0354 2.4423 15 6 2.0081 -0.4299 3.7104 16 6 2.7248 -1.6135 3.8414 17 6 3.0823 -2.0711 5.0949 18 6 2.7183 -1.3607 6.2227 19 6 1.9969 -0.1796 6.0991 20 7 1.6299 0.5380 7.2397 21 6 2.1148 1.9223 7.1693 22 6 1.5730 2.7154 8.3607 23 6 2.0407 2.0565 9.6613 24 6 1.4534 2.8089 10.8571 25 6 1.5638 0.6017 9.6876 26 6 2.1061 -0.1300 8.4577 27 6 1.6410 0.2859 4.8409 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7198 -1.2952 33 1 2.9228 -1.8423 -4.7318 34 1 1.6054 -1.7199 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 1.1484 0.8591 2.3517 37 1 3.0063 -2.1738 2.9621 38 1 3.6430 -2.9887 5.1937 39 1 2.9953 -1.7237 7.2015 40 1 3.2046 1.9271 7.1951 41 1 1.7718 2.3806 6.2417 42 1 0.4835 2.7227 8.3277 43 1 1.9453 3.7389 8.3169 44 1 3.1292 2.0839 9.7126 45 1 1.7833 2.3354 11.7819 46 1 1.7935 3.8443 10.8376 47 1 0.3651 2.7828 10.8038 48 1 0.4741 0.5758 9.6755 49 1 1.9300 0.1149 10.5915 50 1 1.7565 -1.1623 8.4660 51 1 3.1957 -0.1154 8.4774 52 1 1.0804 1.2037 4.7421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602497837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:10 Heat of formation + Delta-G solvation = 2.380805 kcal Electronic energy + Delta-G solvation = -25889.757811 eV Core-core repulsion = 22466.493087 eV Total energy + Delta-G solvation = -3423.264724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45952 -38.59836 -36.69078 -34.96657 -33.55676 -32.10312 -31.40663 -30.23453 -28.90584 -27.25841 -26.84036 -25.71516 -23.87433 -23.30585 -22.58924 -21.70144 -20.62581 -19.78344 -19.25806 -17.64724 -16.54357 -15.93436 -15.73852 -15.45813 -15.02267 -14.81222 -14.64621 -14.46883 -14.40160 -14.22252 -13.70159 -13.43013 -13.21949 -13.01746 -12.82659 -12.62608 -12.40792 -12.32725 -12.04527 -11.87533 -11.63168 -11.53320 -11.27430 -11.15451 -11.06891 -10.93302 -10.88195 -10.66404 -10.52613 -10.40642 -10.33648 -10.07973 -9.75765 -9.44994 -9.31343 -9.04764 -8.38645 -7.88901 -7.13787 -6.02962 -4.04765 1.58410 1.80084 3.28906 3.36749 3.40002 3.48744 3.83659 4.08385 4.38866 4.43009 4.43859 4.46601 4.84877 4.97659 5.03260 5.08421 5.18169 5.26773 5.28985 5.32987 5.33474 5.35953 5.45115 5.53147 5.54294 5.57608 5.60309 5.68468 5.70177 5.74191 5.78866 5.81187 5.83964 5.92957 6.02254 6.09041 6.21319 6.31842 6.38405 6.42394 6.51387 6.67474 6.72843 6.85832 6.99863 7.00577 7.04286 7.33566 7.61244 7.64170 7.74949 7.95879 8.02923 8.38336 9.01162 9.59078 11.08439 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028506 B = 0.002017 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.000331 B =13881.984483 C =14572.060222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 H 0.061 0.939 4 C 0.030 3.970 5 C -0.515 4.515 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.127 3.873 14 N -0.739 5.739 15 C 0.247 3.753 16 C -0.222 4.222 17 C -0.048 4.048 18 C -0.239 4.239 19 C 0.153 3.847 20 N -0.489 5.489 21 C 0.059 3.941 22 C -0.114 4.114 23 C -0.096 4.096 24 C -0.146 4.146 25 C -0.113 4.113 26 C 0.053 3.947 27 C -0.225 4.225 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.017 0.983 32 H 0.019 0.981 33 H 0.260 0.740 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.397 0.603 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.043 0.957 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 4.899 28.328 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.115 4.115 3 H 0.080 0.920 4 C -0.008 4.008 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.003 3.997 14 N -0.366 5.366 15 C 0.140 3.860 16 C -0.245 4.245 17 C -0.067 4.067 18 C -0.262 4.262 19 C 0.055 3.945 20 N -0.204 5.204 21 C -0.066 4.066 22 C -0.151 4.151 23 C -0.115 4.115 24 C -0.203 4.203 25 C -0.151 4.151 26 C -0.074 4.074 27 C -0.250 4.250 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.232 0.768 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.101 0.899 51 H 0.062 0.938 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.136 4.737 28.092 28.511 hybrid contribution 0.337 0.630 -1.071 1.287 sum -0.800 5.367 27.021 27.560 Atomic orbital electron populations 1.21721 0.95913 1.01115 1.00171 1.21441 0.95654 0.99780 0.94625 0.92019 1.19086 0.96270 0.95567 0.89869 1.21231 1.34878 1.08357 0.90907 0.92503 1.25021 0.95264 0.95092 0.99153 1.69971 1.38880 1.21148 1.23400 0.86556 0.78267 0.80082 0.83215 1.19784 1.21057 1.21047 1.21628 0.99049 0.95175 0.83852 1.45022 1.60952 1.27936 1.02671 1.17697 0.91206 0.91878 0.85197 1.20649 1.07518 0.98308 0.98047 1.20686 0.96348 0.97929 0.91758 1.20907 1.07055 0.99447 0.98780 1.18510 0.92929 0.93570 0.89450 1.58969 1.57377 1.02832 1.01224 1.22205 0.97777 0.86997 0.99638 1.21700 1.01837 0.98334 0.93276 1.21213 1.00122 0.95137 0.95014 1.21804 1.01083 0.99972 0.97433 1.21697 1.01793 0.94844 0.96773 1.22238 0.97943 0.98514 0.88710 1.20033 1.11118 1.03833 0.90045 0.91788 0.95086 0.93461 0.96440 0.96285 0.93054 0.92586 0.92555 0.76840 0.86108 0.86529 0.86510 0.94059 0.89945 0.90911 0.91246 0.91453 0.92745 0.92720 0.92552 0.90963 0.91319 0.89916 0.93837 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.88 37.16 0.33 -2.06 16 2 C -0.10 -1.87 2.37 -90.62 -0.22 -2.08 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.52 -14.09 8.41 -34.44 -0.29 -14.38 16 6 H 0.06 1.51 7.05 -52.49 -0.37 1.14 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.13 2.14 4.30 -4.04 -0.02 2.12 16 14 N -0.74 -10.98 5.46 -58.65 -0.32 -11.30 16 15 C 0.25 3.61 6.65 -83.82 -0.56 3.05 16 16 C -0.22 -3.18 9.31 -39.34 -0.37 -3.55 16 17 C -0.05 -0.60 10.03 -39.64 -0.40 -1.00 16 18 C -0.24 -2.91 8.82 -39.34 -0.35 -3.26 16 19 C 0.15 1.93 5.64 -83.82 -0.47 1.46 16 20 N -0.49 -5.20 4.70 -171.17 -0.80 -6.01 16 21 C 0.06 0.55 5.26 -3.83 -0.02 0.53 16 22 C -0.11 -0.84 5.38 -26.65 -0.14 -0.99 16 23 C -0.10 -0.64 2.79 -90.50 -0.25 -0.90 16 24 C -0.15 -0.82 9.21 37.16 0.34 -0.47 16 25 C -0.11 -0.80 5.38 -26.65 -0.14 -0.94 16 26 C 0.05 0.46 4.15 -3.83 -0.02 0.45 16 27 C -0.22 -3.03 9.00 -39.19 -0.35 -3.38 16 28 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 29 H 0.03 0.47 7.18 -51.93 -0.37 0.10 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 35 H 0.06 0.98 7.96 -51.93 -0.41 0.56 16 36 H 0.40 5.47 7.66 -40.82 -0.31 5.15 16 37 H 0.12 1.74 6.72 -52.49 -0.35 1.39 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.12 1.20 5.80 -52.49 -0.30 0.90 16 40 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.79 6.70 -51.93 -0.35 0.44 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.72 6.98 -51.93 -0.36 0.36 16 51 H 0.04 0.38 7.73 -51.93 -0.40 -0.02 16 52 H 0.12 1.47 7.15 -52.48 -0.38 1.10 16 LS Contribution 397.81 15.07 5.99 5.99 Total: -1.00 -29.26 397.81 -11.99 -41.25 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -9.44 Total: 2.74 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -3.14 Total: -23.32 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -0.39 Total: -43.06 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.26 -11.99 -41.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602497837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.631 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds