Wall clock time and date at job start Tue Mar 31 2020 10:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.50707 * 109.47009 * 65.00166 * 4 2 1 6 6 H 1.07996 * 119.99521 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00339 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00003 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00392 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46839 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47356 * 119.99073 * 9 7 5 12 12 H 1.48497 * 109.47175 * 239.99531 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 N 1.46499 * 109.46679 * 294.99474 * 13 2 1 15 15 C 1.39672 * 119.99699 * 179.97438 * 14 13 2 16 16 C 1.38993 * 120.03680 * 359.73447 * 15 14 13 17 17 C 1.38141 * 120.06972 * 179.69396 * 16 15 14 18 18 C 1.38170 * 120.14678 * 0.59895 * 17 16 15 19 19 C 1.38952 * 120.07633 * 359.67748 * 18 17 16 20 20 N 1.39663 * 120.03701 * 180.02562 * 19 18 17 21 21 C 1.46844 * 111.00571 * 124.23102 * 20 19 18 22 22 C 1.53038 * 109.52897 * 174.15544 * 21 20 19 23 23 C 1.53125 * 109.27420 * 59.17760 * 22 21 20 24 24 C 1.53000 * 109.57119 * 182.40699 * 23 22 21 25 25 C 1.53117 * 109.16297 * 302.34993 * 23 22 21 26 26 C 1.46850 * 111.00087 * 0.02562 * 20 19 18 27 27 C 1.38750 * 120.03572 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47465 * 185.00197 * 4 2 1 32 32 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 33 33 H 0.96995 * 120.00234 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.47326 * 54.99931 * 13 2 1 35 35 H 1.09000 * 109.46904 * 175.00284 * 13 2 1 36 36 H 0.96996 * 120.00184 * 0.02562 * 14 13 2 37 37 H 1.07999 * 119.96156 * 359.97438 * 16 15 14 38 38 H 1.07996 * 119.91982 * 180.27707 * 17 16 15 39 39 H 1.08001 * 119.95921 * 179.70039 * 18 17 16 40 40 H 1.09003 * 109.46422 * 294.17740 * 21 20 19 41 41 H 1.09002 * 109.46207 * 54.13730 * 21 20 19 42 42 H 1.08998 * 109.50248 * 299.24037 * 22 21 20 43 43 H 1.08998 * 109.53665 * 179.13684 * 22 21 20 44 44 H 1.09003 * 109.51847 * 62.25325 * 23 22 21 45 45 H 1.09005 * 109.46559 * 179.71198 * 24 23 22 46 46 H 1.08997 * 109.47538 * 299.71668 * 24 23 22 47 47 H 1.08995 * 109.46894 * 59.72257 * 24 23 22 48 48 H 1.09009 * 109.49987 * 297.71251 * 25 23 22 49 49 H 1.09001 * 109.50284 * 177.59728 * 25 23 22 50 50 H 1.09000 * 109.46098 * 305.85428 * 26 20 19 51 51 H 1.08995 * 109.46121 * 65.82686 * 26 20 19 52 52 H 1.08004 * 120.07573 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6756 -1.5194 -3.8512 9 14 1.4989 0.5628 -5.2497 10 1 0.7424 1.7744 -4.8434 11 1 2.7172 0.9667 -5.9965 12 1 0.6443 -0.2857 -6.1184 13 6 2.0400 -0.7213 1.2493 14 7 1.6525 0.0354 2.4423 15 6 2.0081 -0.4299 3.7104 16 6 2.7248 -1.6135 3.8414 17 6 3.0823 -2.0711 5.0949 18 6 2.7183 -1.3607 6.2227 19 6 1.9969 -0.1796 6.0991 20 7 1.6299 0.5380 7.2397 21 6 2.1148 1.9223 7.1693 22 6 1.5730 2.7154 8.3607 23 6 2.0407 2.0565 9.6613 24 6 1.4534 2.8089 10.8571 25 6 1.5638 0.6017 9.6876 26 6 2.1061 -0.1300 8.4577 27 6 1.6410 0.2859 4.8409 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1263 -0.7996 -1.2055 32 1 1.6054 -1.7198 -1.2952 33 1 2.9228 -1.8423 -4.7318 34 1 1.6054 -1.7199 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 1.1484 0.8591 2.3517 37 1 3.0063 -2.1738 2.9621 38 1 3.6430 -2.9887 5.1937 39 1 2.9953 -1.7237 7.2015 40 1 3.2046 1.9271 7.1951 41 1 1.7718 2.3806 6.2417 42 1 0.4835 2.7227 8.3277 43 1 1.9453 3.7389 8.3169 44 1 3.1292 2.0839 9.7126 45 1 1.7833 2.3354 11.7819 46 1 1.7935 3.8443 10.8376 47 1 0.3651 2.7828 10.8038 48 1 0.4741 0.5758 9.6755 49 1 1.9300 0.1149 10.5915 50 1 1.7565 -1.1623 8.4660 51 1 3.1957 -0.1154 8.4774 52 1 1.0804 1.2037 4.7421 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602497837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:09 Heat of formation + Delta-G solvation = -11.762510 kcal Electronic energy + Delta-G solvation = -25890.371111 eV Core-core repulsion = 22466.493087 eV Total energy + Delta-G solvation = -3423.878024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.31757 -39.56982 -37.97584 -36.05569 -34.93440 -33.81635 -32.17114 -31.12309 -30.04235 -28.69950 -27.97407 -27.11335 -24.95322 -24.54562 -23.61976 -22.64960 -21.54234 -20.81972 -20.49651 -18.64041 -18.55270 -17.05139 -16.73190 -16.61857 -16.28357 -16.03117 -15.85545 -15.47259 -15.20476 -15.02638 -14.70650 -14.50480 -14.36829 -14.26783 -14.07607 -13.93353 -13.42484 -13.36513 -13.27612 -12.90284 -12.79766 -12.67791 -12.59163 -12.36514 -12.29085 -12.17124 -12.07428 -11.91749 -11.73549 -11.61055 -11.25478 -11.17922 -11.13966 -11.02980 -10.95536 -10.55221 -10.41184 -8.82965 -8.25517 -8.18664 -6.27731 0.56613 0.76636 1.39690 1.40523 1.52854 2.39166 2.49897 2.80721 3.09532 3.15282 3.79541 3.83654 3.89745 4.02544 4.09301 4.17325 4.23731 4.31015 4.34961 4.36134 4.43180 4.48150 4.56131 4.63117 4.69190 4.73774 4.76917 4.79189 4.80580 4.86679 4.90855 4.92815 4.99095 5.03183 5.11843 5.20247 5.22609 5.26209 5.29881 5.36329 5.42566 5.43740 5.47708 5.51680 5.54465 5.70242 5.72918 5.76564 5.85547 6.14439 6.24797 6.37126 6.51269 6.87353 6.91759 7.40627 8.93493 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028506 B = 0.002017 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.000331 B =13881.984483 C =14572.060222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 H 0.063 0.937 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.934 5.934 9 Si 0.961 3.039 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.144 3.856 14 N -0.737 5.737 15 C 0.232 3.768 16 C -0.243 4.243 17 C -0.049 4.049 18 C -0.239 4.239 19 C 0.151 3.849 20 N -0.495 5.495 21 C 0.059 3.941 22 C -0.109 4.109 23 C -0.095 4.095 24 C -0.142 4.142 25 C -0.109 4.109 26 C 0.050 3.950 27 C -0.230 4.230 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.041 0.959 31 H -0.009 1.009 32 H -0.006 1.006 33 H 0.262 0.738 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.403 0.597 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.046 0.954 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 6.160 30.286 30.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.104 4.104 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.574 5.574 9 Si 0.786 3.214 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.020 3.980 14 N -0.366 5.366 15 C 0.126 3.874 16 C -0.267 4.267 17 C -0.068 4.068 18 C -0.261 4.261 19 C 0.052 3.948 20 N -0.210 5.210 21 C -0.067 4.067 22 C -0.147 4.147 23 C -0.114 4.114 24 C -0.200 4.200 25 C -0.146 4.146 26 C -0.076 4.076 27 C -0.256 4.256 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.009 0.991 32 H 0.012 0.988 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.238 0.762 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.064 0.936 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.718 6.016 30.091 30.734 hybrid contribution 0.540 0.212 -1.558 1.663 sum -1.179 6.229 28.532 29.228 Atomic orbital electron populations 1.21630 0.94543 1.01011 1.00986 1.21207 0.96662 0.99178 0.93329 0.91893 1.18964 0.94506 0.94781 0.92132 1.21645 1.34482 1.08617 0.91930 0.91897 1.25945 0.95299 0.96102 1.02662 1.70103 1.40207 1.22877 1.24248 0.85452 0.78009 0.78884 0.79027 1.18537 1.20668 1.20629 1.21224 0.98277 0.94774 0.83761 1.44760 1.61628 1.28075 1.02143 1.17827 0.91980 0.92391 0.85163 1.20760 1.08557 0.98692 0.98643 1.20954 0.96040 0.98626 0.91208 1.21196 1.06260 0.99111 0.99571 1.18726 0.92333 0.93871 0.89881 1.58993 1.57386 1.03393 1.01218 1.22244 0.97596 0.86469 1.00357 1.21681 1.01422 0.98711 0.92872 1.21210 1.00202 0.94943 0.95003 1.21770 1.00908 1.00137 0.97151 1.21681 1.01346 0.95073 0.96546 1.22332 0.98160 0.98663 0.88486 1.20130 1.11293 1.04042 0.90119 0.93227 0.91904 0.94026 0.99067 0.98752 0.92937 0.93129 0.93508 0.76155 0.86980 0.84451 0.84458 0.94375 0.90552 0.91425 0.90105 0.91349 0.92030 0.92291 0.92713 0.91576 0.89710 0.89903 0.93566 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 8.88 71.98 0.64 -3.81 16 2 C -0.08 -3.33 2.37 -10.79 -0.03 -3.36 16 3 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.03 1.73 4.45 29.85 0.13 1.87 16 5 C -0.53 -29.31 8.41 25.60 0.22 -29.10 16 6 H 0.06 3.34 7.05 -2.91 -0.02 3.32 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 9 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.14 4.96 4.30 86.38 0.37 5.33 16 14 N -0.74 -21.69 5.46 -339.48 -1.85 -23.54 16 15 C 0.23 6.71 6.65 38.20 0.25 6.97 16 16 C -0.24 -6.97 9.31 22.43 0.21 -6.76 16 17 C -0.05 -1.19 10.03 22.23 0.22 -0.97 16 18 C -0.24 -5.42 8.82 22.42 0.20 -5.23 16 19 C 0.15 3.60 5.64 38.20 0.22 3.82 16 20 N -0.49 -9.79 4.70 -695.47 -3.27 -13.05 16 21 C 0.06 1.01 5.26 86.33 0.45 1.46 16 22 C -0.11 -1.42 5.38 30.65 0.16 -1.26 16 23 C -0.10 -1.06 2.79 -10.71 -0.03 -1.09 16 24 C -0.14 -1.27 9.21 71.98 0.66 -0.61 16 25 C -0.11 -1.29 5.38 30.65 0.16 -1.13 16 26 C 0.05 0.77 4.15 86.33 0.36 1.13 16 27 C -0.23 -6.03 9.00 22.53 0.20 -5.83 16 28 H 0.05 1.90 6.95 -2.39 -0.02 1.88 16 29 H 0.06 1.84 7.18 -2.39 -0.02 1.82 16 30 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 34 H 0.05 1.79 7.94 -2.39 -0.02 1.77 16 35 H 0.05 1.68 7.96 -2.39 -0.02 1.67 16 36 H 0.40 10.71 7.66 -92.71 -0.71 10.00 16 37 H 0.11 3.33 6.72 -2.91 -0.02 3.31 16 38 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.14 2.50 5.80 -2.91 -0.02 2.48 16 40 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 1.39 6.70 -2.39 -0.02 1.38 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 46 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.08 1.27 6.98 -2.39 -0.02 1.25 16 51 H 0.05 0.70 7.73 -2.39 -0.02 0.68 16 52 H 0.12 3.00 7.15 -2.91 -0.02 2.98 16 Total: -1.00 -63.14 397.81 2.22 -60.92 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.16 Total: 24.08 kcal Atomic # 6 Polarization: -43.11 SS G_CDS: 4.87 Total: -38.24 kcal Atomic # 7 Polarization: -88.05 SS G_CDS: -4.84 Total: -92.88 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -63.14 2.22 -60.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602497837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.159 kcal (2) G-P(sol) polarization free energy of solvation -63.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds