Wall clock time and date at job start Tue Mar 31 2020 11:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47327 * 239.99813 * 2 1 3 5 5 C 1.50696 * 109.46919 * 64.99798 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 C 1.52999 * 109.47107 * 119.99444 * 2 1 3 14 14 N 1.46903 * 109.47368 * 295.00343 * 13 2 1 15 15 C 1.46898 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.53124 * 109.52203 * 274.68379 * 15 14 13 17 17 C 1.53037 * 109.27502 * 182.44092 * 16 15 14 18 18 N 1.46847 * 109.52567 * 59.17898 * 17 16 15 19 19 C 1.46901 * 111.00210 * 174.15835 * 18 17 16 20 20 C 1.50699 * 109.47065 * 294.21155 * 19 18 17 21 21 C 1.38239 * 120.00001 * 269.72573 * 20 19 18 22 22 C 1.38233 * 120.00370 * 179.78421 * 21 20 19 23 23 C 1.38236 * 119.99554 * 0.44490 * 22 21 20 24 24 C 1.38230 * 120.00150 * 359.81054 * 23 22 21 25 25 C 1.38230 * 119.99960 * 359.97392 * 24 23 22 26 26 C 1.46850 * 111.19460 * 298.25555 * 18 17 16 27 27 C 1.53034 * 109.52273 * 61.74390 * 26 18 17 28 28 H 1.08997 * 109.47105 * 60.00166 * 1 2 3 29 29 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47004 * 300.00313 * 1 2 3 31 31 H 1.09000 * 109.46497 * 305.00064 * 4 2 1 32 32 H 1.08999 * 109.46623 * 185.00128 * 4 2 1 33 33 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 34 34 H 1.09008 * 109.47057 * 55.00147 * 13 2 1 35 35 H 1.09005 * 109.47222 * 174.99830 * 13 2 1 36 36 H 1.00899 * 110.99795 * 56.04805 * 14 13 2 37 37 H 1.09006 * 109.52360 * 34.86806 * 15 14 13 38 38 H 1.08998 * 109.50130 * 302.37841 * 16 15 14 39 39 H 1.08990 * 109.50567 * 62.50046 * 16 15 14 40 40 H 1.09000 * 109.46411 * 299.15985 * 17 16 15 41 41 H 1.09008 * 109.45088 * 179.18497 * 17 16 15 42 42 H 1.09000 * 109.46897 * 54.20339 * 19 18 17 43 43 H 1.08990 * 109.47040 * 174.21024 * 19 18 17 44 44 H 1.08009 * 119.99685 * 0.02562 * 21 20 19 45 45 H 1.08001 * 120.00085 * 180.27198 * 22 21 20 46 46 H 1.08003 * 119.99535 * 179.83182 * 23 22 21 47 47 H 1.08000 * 119.99640 * 180.02562 * 24 23 22 48 48 H 1.07999 * 119.99884 * 180.02562 * 25 24 23 49 49 H 1.08998 * 109.46068 * 301.72201 * 26 18 17 50 50 H 1.09003 * 109.44879 * 181.74977 * 26 18 17 51 51 H 1.09003 * 109.50129 * 180.87900 * 27 26 18 52 52 H 1.09001 * 109.50515 * 60.76202 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6705 -1.5225 -3.8513 9 14 1.4976 0.5619 -5.2497 10 1 2.5628 1.5414 -5.5830 11 1 1.3103 -0.3724 -6.3887 12 1 0.2265 1.2832 -4.9870 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6269 3.6673 16 6 1.1083 -1.6873 4.0997 17 6 1.5768 -2.3335 5.4054 18 7 1.7077 -1.3032 6.4435 19 6 2.0219 -1.9052 7.7462 20 6 0.8557 -2.7407 8.2077 21 6 -0.1412 -2.1708 8.9774 22 6 -1.2132 -2.9361 9.3970 23 6 -1.2836 -4.2735 9.0547 24 6 -0.2841 -4.8447 8.2895 25 6 0.7855 -4.0783 7.8662 26 6 2.7130 -0.2994 6.0715 27 6 2.2784 0.4075 4.7857 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -1.7198 -1.2950 32 1 3.1264 -0.7995 -1.2054 33 1 2.9272 -2.0234 -3.0613 34 1 1.6054 -1.7197 1.2953 35 1 3.1264 -0.7994 1.2057 36 1 0.6528 0.1794 2.4753 37 1 3.0873 -1.1008 3.4746 38 1 0.1365 -1.2184 4.2539 39 1 1.0262 -2.4499 3.3253 40 1 2.5422 -2.8141 5.2469 41 1 0.8478 -3.0789 5.7235 42 1 2.9056 -2.5361 7.6512 43 1 2.2145 -1.1169 8.4737 44 1 -0.0845 -1.1266 9.2476 45 1 -1.9942 -2.4897 9.9946 46 1 -2.1198 -4.8720 9.3849 47 1 -0.3395 -5.8895 8.0218 48 1 1.5662 -4.5245 7.2680 49 1 3.6731 -0.7896 5.9099 50 1 2.8093 0.4324 6.8736 51 1 3.0324 1.1415 4.5013 52 1 1.3250 0.9094 4.9507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602503871.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:18 Heat of formation + Delta-G solvation = -15.669243 kcal Electronic energy + Delta-G solvation = -26046.549403 eV Core-core repulsion = 22622.501971 eV Total energy + Delta-G solvation = -3424.047433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.80113 -39.71937 -38.22145 -36.23228 -34.54922 -32.95271 -31.98774 -31.58549 -30.86059 -28.46645 -27.36040 -26.18900 -24.58081 -24.24481 -23.34333 -23.06004 -21.82934 -21.23389 -20.57661 -18.88761 -17.66845 -17.38322 -16.57675 -16.37975 -16.14449 -16.05648 -15.63581 -15.61539 -15.46354 -15.19267 -14.95643 -14.63880 -14.28194 -14.15770 -14.01448 -13.70697 -13.49777 -13.47503 -13.18623 -13.12938 -12.98681 -12.76373 -12.52915 -12.39426 -12.17752 -12.00314 -11.93403 -11.86487 -11.79482 -11.67585 -11.50663 -11.46114 -11.22146 -10.56118 -10.52439 -9.79706 -9.70619 -9.33611 -9.26683 -8.66123 -6.34957 0.43021 0.52416 1.51887 1.61343 1.78750 2.57217 2.71420 3.13435 3.17985 3.18521 3.75549 3.76878 3.91424 3.96300 4.04441 4.14828 4.16358 4.17406 4.24228 4.29188 4.32756 4.36435 4.41686 4.53768 4.59622 4.61117 4.63513 4.69154 4.70303 4.78812 4.79949 4.87010 4.89926 4.97109 5.00555 5.06271 5.12931 5.17734 5.19711 5.24559 5.29055 5.34076 5.47491 5.57832 5.63363 5.64592 5.70904 6.00925 6.05266 6.08587 6.12999 6.16034 6.21957 6.46580 6.61628 7.45884 8.74426 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.002033 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.562593 B =13772.793971 C =14207.098196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.069 4.069 3 H 0.055 0.945 4 C 0.017 3.983 5 C -0.604 4.604 6 H 0.053 0.947 7 C -0.045 4.045 8 N -0.942 5.942 9 Si 1.119 2.881 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.080 3.920 14 N -0.683 5.683 15 C 0.087 3.913 16 C -0.138 4.138 17 C 0.063 3.937 18 N -0.536 5.536 19 C 0.095 3.905 20 C -0.087 4.087 21 C -0.110 4.110 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.132 4.132 25 C -0.127 4.127 26 C 0.060 3.940 27 C -0.095 4.095 28 H 0.044 0.956 29 H 0.039 0.961 30 H 0.068 0.932 31 H -0.015 1.015 32 H -0.018 1.018 33 H 0.253 0.747 34 H 0.022 0.978 35 H 0.053 0.947 36 H 0.344 0.656 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.030 0.970 41 H 0.077 0.923 42 H 0.044 0.956 43 H 0.096 0.904 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.133 0.867 48 H 0.121 0.879 49 H 0.033 0.967 50 H 0.093 0.907 51 H 0.072 0.928 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.118 -2.208 30.838 31.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.021 4.021 5 C -0.642 4.642 6 H 0.071 0.929 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.940 3.060 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.050 4.050 14 N -0.313 5.313 15 C -0.023 4.023 16 C -0.177 4.177 17 C -0.065 4.065 18 N -0.261 5.261 19 C -0.032 4.032 20 C -0.087 4.087 21 C -0.128 4.128 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.067 4.067 27 C -0.134 4.134 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.004 0.996 32 H 0.000 1.000 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.164 0.836 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.114 0.886 44 H 0.149 0.851 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.151 0.849 48 H 0.139 0.861 49 H 0.051 0.949 50 H 0.112 0.888 51 H 0.091 0.909 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.929 -1.506 29.198 29.649 hybrid contribution 0.354 -1.669 1.244 2.112 sum -4.576 -3.176 30.442 30.947 Atomic orbital electron populations 1.21629 0.94837 1.00579 1.01168 1.20907 0.96296 0.98833 0.92798 0.92612 1.19176 0.93753 0.94766 0.94358 1.22454 1.37981 1.10361 0.93356 0.92917 1.27439 0.94125 0.97296 1.05289 1.70889 1.38331 1.15997 1.32780 0.82911 0.76959 0.74361 0.71721 1.19899 1.20962 1.19274 1.21827 0.99146 0.94298 0.89685 1.60620 1.20185 1.49613 1.00931 1.21665 0.97262 0.93590 0.89814 1.22221 0.99997 0.98852 0.96669 1.22004 0.99754 0.93775 0.91006 1.61948 1.47775 1.14549 1.01854 1.21053 0.93788 0.97280 0.91071 1.19856 0.96960 0.93904 0.98027 1.21230 0.93775 1.00285 0.97550 1.21449 0.98547 0.94434 1.00301 1.21453 0.99255 0.95708 0.98410 1.21381 0.94516 1.00640 0.98447 1.21226 0.99046 0.94019 1.00273 1.22113 0.92232 0.94612 0.97789 1.21473 1.02455 0.97133 0.92295 0.93696 0.94211 0.91324 0.99640 0.99993 0.93715 0.96027 0.92814 0.83604 0.92049 0.91244 0.92658 0.95181 0.90427 0.93827 0.88578 0.85112 0.84418 0.84507 0.84890 0.86126 0.94864 0.88825 0.90926 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.68 8.77 71.98 0.63 -4.05 16 2 C -0.07 -2.91 2.54 -10.79 -0.03 -2.94 16 3 H 0.06 2.45 8.14 -2.39 -0.02 2.44 16 4 C 0.02 0.90 3.76 29.85 0.11 1.02 16 5 C -0.60 -35.00 8.41 25.60 0.22 -34.79 16 6 H 0.05 2.98 7.06 -2.91 -0.02 2.96 16 7 C -0.05 -2.67 5.46 84.66 0.46 -2.20 16 8 N -0.94 -59.88 13.65 21.45 0.29 -59.59 16 9 Si 1.12 51.47 29.90 68.60 2.05 53.52 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 C 0.08 2.80 4.94 86.30 0.43 3.23 16 14 N -0.68 -19.52 6.25 -491.13 -3.07 -22.59 16 15 C 0.09 2.07 2.53 45.00 0.11 2.19 16 16 C -0.14 -3.07 5.35 30.65 0.16 -2.91 16 17 C 0.06 1.23 5.16 86.33 0.45 1.68 16 18 N -0.54 -9.39 4.65 -900.93 -4.19 -13.58 16 19 C 0.09 1.40 5.12 85.56 0.44 1.84 16 20 C -0.09 -1.40 4.89 -19.87 -0.10 -1.50 16 21 C -0.11 -1.67 9.70 22.27 0.22 -1.46 16 22 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 23 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 24 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 25 C -0.13 -2.04 7.88 22.27 0.18 -1.87 16 26 C 0.06 1.00 5.46 86.32 0.47 1.47 16 27 C -0.10 -1.90 5.70 30.64 0.17 -1.73 16 28 H 0.04 1.84 6.95 -2.39 -0.02 1.82 16 29 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 2.09 6.68 -2.39 -0.02 2.07 16 31 H -0.01 -0.83 8.00 -2.39 -0.02 -0.85 16 32 H -0.02 -1.04 8.01 -2.39 -0.02 -1.06 16 33 H 0.25 16.36 7.22 -92.71 -0.67 15.69 16 34 H 0.02 0.76 7.51 -2.38 -0.02 0.74 16 35 H 0.05 1.99 8.06 -2.38 -0.02 1.97 16 36 H 0.34 9.30 6.70 -89.69 -0.60 8.70 16 37 H 0.06 1.60 7.80 -2.38 -0.02 1.58 16 38 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 39 H 0.05 1.34 7.54 -2.39 -0.02 1.32 16 40 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.08 1.53 5.75 -2.38 -0.01 1.52 16 42 H 0.04 0.63 8.07 -2.39 -0.02 0.61 16 43 H 0.10 1.16 7.93 -2.39 -0.02 1.14 16 44 H 0.13 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 46 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 47 H 0.13 1.51 8.06 -2.91 -0.02 1.49 16 48 H 0.12 1.76 7.95 -2.91 -0.02 1.74 16 49 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.09 1.24 8.02 -2.39 -0.02 1.22 16 51 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -66.84 400.01 0.04 -66.80 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.36 Total: 22.35 kcal Atomic # 6 Polarization: -51.51 SS G_CDS: 4.59 Total: -46.92 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -6.97 Total: -95.76 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 2.05 Total: 53.52 kcal Total: -66.84 0.04 -66.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602503871.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.133 kcal (2) G-P(sol) polarization free energy of solvation -66.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds