Wall clock time and date at job start Tue Mar 31 2020 11:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47280 * 2 1 4 4 C 1.52995 * 109.47175 * 240.00020 * 2 1 3 5 5 C 1.50701 * 109.47337 * 64.99507 * 4 2 1 6 6 H 1.08006 * 119.99792 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00264 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00124 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00283 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46889 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47165 * 119.99855 * 9 7 5 12 12 H 1.48496 * 109.47264 * 240.00174 * 9 7 5 13 13 C 1.52998 * 109.47065 * 119.99792 * 2 1 3 14 14 N 1.46897 * 109.47491 * 294.99883 * 13 2 1 15 15 C 1.46894 * 111.00311 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.47126 * 179.97438 * 15 14 13 17 17 H 1.08993 * 109.46991 * 65.00531 * 16 15 14 18 18 C 1.50707 * 109.46901 * 185.00183 * 16 15 14 19 19 C 1.38238 * 119.99792 * 260.00270 * 18 16 15 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 16 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 79.98206 * 18 16 15 24 24 N 1.46897 * 109.47477 * 304.99910 * 16 15 14 25 25 C 1.48538 * 110.99699 * 57.60245 * 24 16 15 26 26 C 1.54933 * 103.22592 * 159.72006 * 25 24 16 27 27 C 1.54599 * 102.92376 * 322.58826 * 26 25 24 28 28 C 1.47901 * 111.00214 * 174.99966 * 24 16 15 29 29 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47318 * 299.99876 * 1 2 3 31 31 H 1.08991 * 109.47671 * 60.00097 * 1 2 3 32 32 H 1.08999 * 109.47439 * 185.00137 * 4 2 1 33 33 H 1.09004 * 109.46662 * 304.99726 * 4 2 1 34 34 H 0.97001 * 120.00323 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.46977 * 175.00408 * 13 2 1 36 36 H 1.08997 * 109.47341 * 55.00320 * 13 2 1 37 37 H 1.00896 * 111.00065 * 56.04682 * 14 13 2 38 38 H 1.09008 * 109.47007 * 60.00316 * 15 14 13 39 39 H 1.08992 * 109.47301 * 300.00108 * 15 14 13 40 40 H 1.08005 * 120.00068 * 359.97438 * 19 18 16 41 41 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 44 44 H 1.07999 * 119.99968 * 359.97438 * 23 18 16 45 45 H 1.08992 * 110.67067 * 278.15851 * 25 24 16 46 46 H 1.09003 * 110.66470 * 41.28849 * 25 24 16 47 47 H 1.09007 * 110.72392 * 204.23010 * 26 25 24 48 48 H 1.09001 * 110.72336 * 80.94416 * 26 25 24 49 49 H 1.08999 * 110.30560 * 263.04176 * 27 26 25 50 50 H 1.08992 * 110.31057 * 140.87422 * 27 26 25 51 51 H 1.08998 * 109.91235 * 333.51085 * 28 24 16 52 52 H 1.08990 * 109.91776 * 94.80307 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6412 0.0570 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9922 -0.4023 -3.7283 8 7 2.6746 -1.5198 -3.8512 9 14 1.4986 0.5627 -5.2496 10 1 0.7431 1.7749 -4.8433 11 1 2.7169 0.9666 -5.9966 12 1 0.6439 -0.2858 -6.1183 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1258 -0.6264 3.6671 16 6 1.7035 0.1917 4.8891 17 1 0.6163 0.1947 4.9663 18 6 2.2936 -0.4217 6.1328 19 6 1.5163 -1.2313 6.9399 20 6 2.0578 -1.7944 8.0803 21 6 3.3768 -1.5485 8.4133 22 6 4.1525 -0.7347 7.6090 23 6 3.6124 -0.1753 6.4661 24 7 2.1881 1.5711 4.7463 25 6 1.6719 2.1901 3.4986 26 6 1.8183 3.7085 3.7693 27 6 1.4622 3.8283 5.2689 28 6 1.6974 2.4225 5.8517 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2950 34 1 2.9219 -1.8428 -4.7318 35 1 3.1263 -0.7993 1.2056 36 1 1.6054 -1.7197 1.2952 37 1 0.6529 0.1793 2.4754 38 1 3.2128 -0.7036 3.6400 39 1 1.6922 -1.6244 3.7301 40 1 0.4860 -1.4237 6.6795 41 1 1.4504 -2.4265 8.7111 42 1 3.7999 -1.9889 9.3041 43 1 5.1817 -0.5391 7.8715 44 1 4.2198 0.4565 5.8351 45 1 2.2767 1.8918 2.6424 46 1 0.6258 1.9262 3.3426 47 1 1.1171 4.2784 3.1596 48 1 2.8423 4.0355 3.5887 49 1 0.4180 4.1173 5.3878 50 1 2.1140 4.5536 5.7558 51 1 0.7623 2.0212 6.2424 52 1 2.4443 2.4691 6.6441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602506483.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:31 Heat of formation + Delta-G solvation = 27.858938 kcal Electronic energy + Delta-G solvation = -26874.487059 eV Core-core repulsion = 23452.327150 eV Total energy + Delta-G solvation = -3422.159909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.12748 -38.44583 -36.83271 -34.63731 -33.01065 -31.67205 -31.02853 -30.07974 -28.62461 -27.56546 -26.66590 -25.12592 -23.12663 -22.74910 -22.00872 -21.42458 -20.71424 -20.20924 -18.84243 -17.03705 -16.55903 -16.33361 -15.85414 -15.41776 -15.27227 -14.66194 -14.45160 -14.21223 -13.99702 -13.70180 -13.60081 -13.41838 -13.00751 -12.88512 -12.64207 -12.51420 -12.22917 -12.09177 -11.99444 -11.59111 -11.36189 -11.29372 -11.17515 -11.01903 -10.92186 -10.85303 -10.84267 -10.68247 -10.49269 -10.32106 -10.17689 -9.71531 -9.16755 -9.03154 -8.96761 -8.79829 -8.36760 -8.32344 -7.89717 -5.96846 -3.97918 1.20218 1.29898 3.32498 3.40226 3.43978 3.63181 3.98564 4.29868 4.49135 4.65552 4.76408 4.78648 4.84590 4.90423 5.00315 5.05461 5.16766 5.19738 5.39098 5.39515 5.42248 5.47683 5.56559 5.60412 5.75389 5.76145 5.80527 5.84830 5.86771 5.91936 5.95030 6.00395 6.05709 6.12569 6.25606 6.27495 6.32734 6.40099 6.45210 6.49916 6.55856 6.67801 6.87703 6.92567 7.07082 7.10409 7.14678 7.17483 7.33468 7.58831 7.71377 7.86930 8.03611 8.47194 9.08804 9.65579 11.14703 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017282 B = 0.002719 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.774597 B =10296.121130 C =11312.035357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.060 3.940 14 N -0.680 5.680 15 C 0.067 3.933 16 C 0.120 3.880 17 H 0.044 0.956 18 C -0.075 4.075 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.126 4.126 23 C -0.087 4.087 24 N -0.501 5.501 25 C 0.050 3.950 26 C -0.133 4.133 27 C -0.131 4.131 28 C 0.037 3.963 29 H 0.040 0.960 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.023 0.977 37 H 0.335 0.665 38 H 0.081 0.919 39 H 0.032 0.968 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.036 0.964 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.036 0.964 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 4.116 25.129 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.068 4.068 14 N -0.312 5.312 15 C -0.063 4.063 16 C 0.011 3.989 17 H 0.062 0.938 18 C -0.076 4.076 19 C -0.135 4.135 20 C -0.143 4.143 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.105 4.105 24 N -0.225 5.225 25 C -0.077 4.077 26 C -0.171 4.171 27 C -0.170 4.170 28 C -0.091 4.091 29 H 0.059 0.941 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.154 0.846 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.151 0.849 45 H 0.145 0.855 46 H 0.054 0.946 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.054 0.946 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.579 4.378 24.945 25.333 hybrid contribution -1.821 -0.446 -0.695 2.000 sum -2.400 3.932 24.250 24.683 Atomic orbital electron populations 1.21739 0.96824 1.00349 1.00154 1.21201 0.94681 1.00065 0.94144 0.91592 1.19109 0.96153 0.95332 0.90392 1.21270 1.34507 1.08206 0.90971 0.92533 1.25022 0.95371 0.95089 0.99109 1.69977 1.39197 1.21239 1.23248 0.86587 0.78257 0.80120 0.83343 1.19761 1.21083 1.21163 1.22192 1.00547 0.94469 0.89622 1.61371 1.19035 1.49069 1.01679 1.21978 1.01712 0.94137 0.88458 1.20712 0.96046 0.89926 0.92249 0.93846 1.19739 0.94502 0.97640 0.95682 1.21031 0.99627 0.97870 0.95019 1.21052 0.95599 1.00378 0.97235 1.21135 0.94362 0.98930 0.99775 1.21207 0.99838 0.97941 0.95412 1.21117 0.94772 0.98313 0.96335 1.64757 1.55310 0.99852 1.02618 1.23651 0.99252 0.90782 0.94044 1.22654 1.01806 0.97847 0.94821 1.22392 1.00909 0.96652 0.97003 1.22831 0.98316 0.92879 0.95081 0.94126 0.95146 0.91879 0.96648 0.96846 0.93170 0.91308 0.95920 0.84619 0.90037 0.94947 0.86546 0.86376 0.86463 0.86235 0.84931 0.85460 0.94586 0.91508 0.91101 0.92128 0.91619 0.94579 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.77 37.16 0.33 -2.08 16 2 C -0.08 -1.61 2.54 -90.62 -0.23 -1.84 16 3 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.17 8.41 -34.44 -0.29 -14.46 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.06 1.00 5.14 -3.83 -0.02 0.98 16 14 N -0.68 -9.22 2.62 -113.78 -0.30 -9.52 16 15 C 0.07 0.83 5.31 -3.83 -0.02 0.81 16 16 C 0.12 1.34 1.83 -68.86 -0.13 1.21 16 17 H 0.04 0.49 7.82 -51.93 -0.41 0.08 16 18 C -0.07 -0.80 4.24 -104.62 -0.44 -1.25 16 19 C -0.12 -1.16 9.67 -39.58 -0.38 -1.54 16 20 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 21 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 22 C -0.13 -1.19 10.05 -39.58 -0.40 -1.58 16 23 C -0.09 -0.93 9.17 -39.58 -0.36 -1.29 16 24 N -0.50 -5.71 4.38 -223.89 -0.98 -6.69 16 25 C 0.05 0.60 4.66 -1.90 -0.01 0.59 16 26 C -0.13 -1.42 7.06 -24.87 -0.18 -1.60 16 27 C -0.13 -1.26 6.93 -25.37 -0.18 -1.43 16 28 C 0.04 0.38 5.88 -2.76 -0.02 0.37 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.45 6.68 -51.93 -0.35 0.11 16 31 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.33 4.37 5.84 -39.29 -0.23 4.15 16 38 H 0.08 1.10 8.14 -51.92 -0.42 0.67 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.12 1.02 8.04 -52.48 -0.42 0.60 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.13 1.47 7.72 -52.49 -0.41 1.06 16 45 H 0.13 1.79 6.30 -51.93 -0.33 1.47 16 46 H 0.04 0.44 6.90 -51.93 -0.36 0.08 16 47 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.04 0.38 7.65 -51.93 -0.40 -0.02 16 52 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -28.94 400.07 -12.40 -41.33 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -9.52 Total: 2.54 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -3.34 Total: -24.11 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.54 Total: -42.42 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.94 -12.40 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506483.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.190 kcal (2) G-P(sol) polarization free energy of solvation -28.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds