Wall clock time and date at job start Tue Mar 31 2020 11:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47280 * 2 1 4 4 C 1.52995 * 109.47175 * 240.00020 * 2 1 3 5 5 C 1.50701 * 109.47337 * 64.99507 * 4 2 1 6 6 H 1.08006 * 119.99792 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00264 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00124 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00283 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46889 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47165 * 119.99855 * 9 7 5 12 12 H 1.48496 * 109.47264 * 240.00174 * 9 7 5 13 13 C 1.52998 * 109.47065 * 119.99792 * 2 1 3 14 14 N 1.46897 * 109.47491 * 294.99883 * 13 2 1 15 15 C 1.46894 * 111.00311 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.47126 * 179.97438 * 15 14 13 17 17 H 1.08993 * 109.46991 * 65.00531 * 16 15 14 18 18 C 1.50707 * 109.46901 * 185.00183 * 16 15 14 19 19 C 1.38238 * 119.99792 * 260.00270 * 18 16 15 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 16 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 79.98206 * 18 16 15 24 24 N 1.46897 * 109.47477 * 304.99910 * 16 15 14 25 25 C 1.48538 * 110.99699 * 57.60245 * 24 16 15 26 26 C 1.54933 * 103.22592 * 159.72006 * 25 24 16 27 27 C 1.54599 * 102.92376 * 322.58826 * 26 25 24 28 28 C 1.47901 * 111.00214 * 174.99966 * 24 16 15 29 29 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47318 * 299.99876 * 1 2 3 31 31 H 1.08991 * 109.47671 * 60.00097 * 1 2 3 32 32 H 1.08999 * 109.47439 * 185.00137 * 4 2 1 33 33 H 1.09004 * 109.46662 * 304.99726 * 4 2 1 34 34 H 0.97001 * 120.00323 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.46977 * 175.00408 * 13 2 1 36 36 H 1.08997 * 109.47341 * 55.00320 * 13 2 1 37 37 H 1.00896 * 111.00065 * 56.04682 * 14 13 2 38 38 H 1.09008 * 109.47007 * 60.00316 * 15 14 13 39 39 H 1.08992 * 109.47301 * 300.00108 * 15 14 13 40 40 H 1.08005 * 120.00068 * 359.97438 * 19 18 16 41 41 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 42 42 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 43 43 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 44 44 H 1.07999 * 119.99968 * 359.97438 * 23 18 16 45 45 H 1.08992 * 110.67067 * 278.15851 * 25 24 16 46 46 H 1.09003 * 110.66470 * 41.28849 * 25 24 16 47 47 H 1.09007 * 110.72392 * 204.23010 * 26 25 24 48 48 H 1.09001 * 110.72336 * 80.94416 * 26 25 24 49 49 H 1.08999 * 110.30560 * 263.04176 * 27 26 25 50 50 H 1.08992 * 110.31057 * 140.87422 * 27 26 25 51 51 H 1.08998 * 109.91235 * 333.51085 * 28 24 16 52 52 H 1.08990 * 109.91776 * 94.80307 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6412 0.0570 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9922 -0.4023 -3.7283 8 7 2.6746 -1.5198 -3.8512 9 14 1.4986 0.5627 -5.2496 10 1 0.7431 1.7749 -4.8433 11 1 2.7169 0.9666 -5.9966 12 1 0.6439 -0.2858 -6.1183 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1258 -0.6264 3.6671 16 6 1.7035 0.1917 4.8891 17 1 0.6163 0.1947 4.9663 18 6 2.2936 -0.4217 6.1328 19 6 1.5163 -1.2313 6.9399 20 6 2.0578 -1.7944 8.0803 21 6 3.3768 -1.5485 8.4133 22 6 4.1525 -0.7347 7.6090 23 6 3.6124 -0.1753 6.4661 24 7 2.1881 1.5711 4.7463 25 6 1.6719 2.1901 3.4986 26 6 1.8183 3.7085 3.7693 27 6 1.4622 3.8283 5.2689 28 6 1.6974 2.4225 5.8517 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2950 34 1 2.9219 -1.8428 -4.7318 35 1 3.1263 -0.7993 1.2056 36 1 1.6054 -1.7197 1.2952 37 1 0.6529 0.1793 2.4754 38 1 3.2128 -0.7036 3.6400 39 1 1.6922 -1.6244 3.7301 40 1 0.4860 -1.4237 6.6795 41 1 1.4504 -2.4265 8.7111 42 1 3.7999 -1.9889 9.3041 43 1 5.1817 -0.5391 7.8715 44 1 4.2198 0.4565 5.8351 45 1 2.2767 1.8918 2.6424 46 1 0.6258 1.9262 3.3426 47 1 1.1171 4.2784 3.1596 48 1 2.8423 4.0355 3.5887 49 1 0.4180 4.1173 5.3878 50 1 2.1140 4.5536 5.7558 51 1 0.7623 2.0212 6.2424 52 1 2.4443 2.4691 6.6441 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602506483.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:30 Heat of formation + Delta-G solvation = 14.342162 kcal Electronic energy + Delta-G solvation = -26875.073190 eV Core-core repulsion = 23452.327150 eV Total energy + Delta-G solvation = -3422.746041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97489 -39.26872 -38.20447 -35.97287 -34.56557 -33.22356 -31.74500 -30.89579 -29.59093 -29.05365 -28.11470 -26.56318 -24.60047 -23.58662 -23.19603 -22.29628 -21.68452 -21.09683 -20.39472 -18.51623 -17.76035 -17.47419 -16.77515 -16.60248 -16.38419 -16.19129 -15.54138 -15.25547 -15.08519 -14.94594 -14.65586 -14.31885 -14.14719 -14.11513 -13.80224 -13.56094 -13.54715 -13.37190 -13.28088 -12.86549 -12.76800 -12.72903 -12.45922 -12.24290 -12.10249 -12.03908 -11.92360 -11.81353 -11.78986 -11.62801 -11.45698 -11.30827 -11.04061 -10.89182 -10.52843 -9.75805 -9.58905 -9.29375 -9.01333 -8.16285 -6.25078 0.46581 0.56971 1.40331 1.41107 1.53823 2.42838 2.86909 3.10844 3.17442 3.23004 3.77167 3.93131 4.00553 4.07598 4.16413 4.19791 4.22334 4.25581 4.30874 4.34028 4.38815 4.48817 4.54747 4.57864 4.69593 4.75236 4.77421 4.82205 4.88569 4.92014 4.98048 5.05235 5.06608 5.11026 5.14439 5.23232 5.25833 5.28901 5.40662 5.42264 5.50719 5.56802 5.59524 5.66761 5.69975 5.75234 5.81973 5.91428 6.03161 6.14279 6.19678 6.26818 6.32540 6.46964 6.91629 7.43271 8.96060 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017282 B = 0.002719 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.774597 B =10296.121130 C =11312.035357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 H 0.060 0.940 4 C 0.032 3.968 5 C -0.525 4.525 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.960 3.040 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.075 3.925 14 N -0.670 5.670 15 C 0.072 3.928 16 C 0.129 3.871 17 H 0.047 0.953 18 C -0.087 4.087 19 C -0.126 4.126 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.100 4.100 24 N -0.509 5.509 25 C 0.052 3.948 26 C -0.132 4.132 27 C -0.126 4.126 28 C 0.041 3.959 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.045 0.955 32 H -0.015 1.015 33 H -0.013 1.013 34 H 0.261 0.739 35 H 0.055 0.945 36 H 0.019 0.981 37 H 0.342 0.658 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.126 0.874 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.121 0.879 45 H 0.105 0.895 46 H 0.037 0.963 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.037 0.963 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 5.097 26.774 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.005 4.005 5 C -0.563 4.563 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.184 1.184 11 H -0.207 1.207 12 H -0.206 1.206 13 C -0.054 4.054 14 N -0.302 5.302 15 C -0.057 4.057 16 C 0.020 3.980 17 H 0.065 0.935 18 C -0.087 4.087 19 C -0.144 4.144 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.118 4.118 24 N -0.233 5.233 25 C -0.076 4.076 26 C -0.170 4.170 27 C -0.164 4.164 28 C -0.087 4.087 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.003 0.997 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.162 0.838 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.144 0.856 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.152 0.848 44 H 0.139 0.861 45 H 0.123 0.877 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.092 0.908 51 H 0.055 0.945 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.828 5.373 26.611 27.210 hybrid contribution -1.383 -0.791 -1.134 1.955 sum -3.211 4.582 25.478 26.085 Atomic orbital electron populations 1.21638 0.95072 1.00473 1.01062 1.20968 0.96015 0.99067 0.92910 0.92122 1.19006 0.94133 0.94509 0.92865 1.21673 1.34161 1.08450 0.91982 0.91960 1.25954 0.95357 0.96098 1.02686 1.70113 1.40514 1.23012 1.24147 0.85470 0.78033 0.78937 0.79058 1.18438 1.20676 1.20633 1.21861 0.99551 0.94176 0.89828 1.61329 1.19496 1.48364 1.00983 1.21935 1.00876 0.94529 0.88408 1.20590 0.96117 0.89571 0.91746 0.93521 1.19730 0.94756 0.98456 0.95807 1.21224 1.00150 0.97764 0.95306 1.21365 0.95989 1.00169 0.97070 1.21457 0.94337 0.98345 1.00281 1.21437 1.00753 0.97814 0.95043 1.21111 0.94857 0.98902 0.96972 1.64717 1.55678 1.00153 1.02786 1.23499 0.98670 0.91827 0.93593 1.22622 1.01639 0.96866 0.95883 1.22373 1.01743 0.96330 0.95946 1.22801 0.98210 0.93106 0.94606 0.94373 0.91528 0.93605 0.99676 0.99445 0.93023 0.92669 0.96247 0.83842 0.91353 0.94716 0.85556 0.84260 0.84206 0.84778 0.86058 0.87720 0.94521 0.90893 0.91781 0.91106 0.90764 0.94461 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 8.77 71.98 0.63 -3.78 16 2 C -0.07 -2.82 2.54 -10.80 -0.03 -2.84 16 3 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.03 1.70 4.45 29.85 0.13 1.84 16 5 C -0.52 -29.57 8.41 25.60 0.22 -29.36 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 9 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.07 2.53 5.14 86.30 0.44 2.98 16 14 N -0.67 -17.87 2.62 -513.90 -1.35 -19.21 16 15 C 0.07 1.77 5.31 86.31 0.46 2.23 16 16 C 0.13 2.76 1.83 44.17 0.08 2.84 16 17 H 0.05 0.98 7.82 -2.39 -0.02 0.96 16 18 C -0.09 -1.78 4.24 -19.86 -0.08 -1.87 16 19 C -0.13 -2.29 9.67 22.27 0.22 -2.08 16 20 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 21 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 22 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 23 C -0.10 -2.07 9.17 22.27 0.20 -1.87 16 24 N -0.51 -11.22 4.38 -862.26 -3.77 -15.00 16 25 C 0.05 1.19 4.66 86.65 0.40 1.59 16 26 C -0.13 -2.66 7.06 31.80 0.22 -2.44 16 27 C -0.13 -2.18 6.93 31.47 0.22 -1.96 16 28 C 0.04 0.79 5.88 86.45 0.51 1.29 16 29 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.07 1.86 6.68 -2.39 -0.02 1.84 16 31 H 0.04 1.77 6.95 -2.39 -0.02 1.75 16 32 H -0.02 -0.88 8.14 -2.39 -0.02 -0.89 16 33 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.34 8.41 5.84 -89.70 -0.52 7.88 16 38 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 39 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.13 1.97 8.04 -2.91 -0.02 1.95 16 41 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 44 H 0.12 2.72 7.72 -2.91 -0.02 2.70 16 45 H 0.10 2.93 6.30 -2.39 -0.02 2.92 16 46 H 0.04 0.83 6.90 -2.39 -0.02 0.81 16 47 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 48 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.04 0.71 7.65 -2.39 -0.02 0.70 16 52 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 Total: -1.00 -63.22 400.07 2.29 -60.93 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.34 Total: 22.86 kcal Atomic # 6 Polarization: -43.60 SS G_CDS: 4.76 Total: -38.84 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -4.83 Total: -91.60 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -63.22 2.29 -60.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506483.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.271 kcal (2) G-P(sol) polarization free energy of solvation -63.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds