Wall clock time and date at job start Tue Mar 31 2020 11:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46950 * 2 1 4 4 C 1.52999 * 109.47381 * 120.00529 * 2 1 3 5 5 C 1.50700 * 109.46758 * 294.99932 * 4 2 1 6 6 H 1.08003 * 119.99954 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00024 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99408 * 359.72094 * 7 5 4 9 9 Si 1.86792 * 119.99983 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47268 * 269.72111 * 9 7 5 11 11 H 1.48502 * 109.47562 * 29.72646 * 9 7 5 12 12 H 1.48504 * 109.47281 * 149.72462 * 9 7 5 13 13 C 1.53009 * 109.47312 * 240.00540 * 2 1 3 14 14 N 1.46897 * 109.46970 * 64.99700 * 13 2 1 15 15 C 1.46907 * 111.00107 * 180.02562 * 14 13 2 16 16 C 1.52991 * 109.47508 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.47050 * 295.00190 * 16 15 14 18 18 C 1.50695 * 109.47323 * 175.00238 * 16 15 14 19 19 C 1.38231 * 120.00106 * 142.17305 * 18 16 15 20 20 C 1.38238 * 119.99781 * 179.76430 * 19 18 16 21 21 C 1.38231 * 120.00050 * 0.50438 * 20 19 18 22 22 C 1.38234 * 120.00197 * 359.74754 * 21 20 19 23 23 C 1.38238 * 119.99675 * 322.44432 * 18 16 15 24 24 N 1.46901 * 109.47406 * 54.99685 * 16 15 14 25 25 C 1.48530 * 110.99582 * 67.53214 * 24 16 15 26 26 C 1.54940 * 103.22372 * 159.72394 * 25 24 16 27 27 C 1.54594 * 102.92055 * 322.58481 * 26 25 24 28 28 C 1.47896 * 111.00173 * 184.93127 * 24 16 15 29 29 H 1.09003 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47223 * 299.99383 * 1 2 3 31 31 H 1.09006 * 109.47135 * 59.99962 * 1 2 3 32 32 H 1.09004 * 109.47230 * 175.00457 * 4 2 1 33 33 H 1.08995 * 109.47127 * 55.00205 * 4 2 1 34 34 H 0.96992 * 120.00416 * 0.27985 * 8 7 5 35 35 H 1.08992 * 109.47207 * 184.99926 * 13 2 1 36 36 H 1.08995 * 109.46561 * 304.99805 * 13 2 1 37 37 H 1.00909 * 111.00362 * 303.95399 * 14 13 2 38 38 H 1.09000 * 109.46564 * 300.00500 * 15 14 13 39 39 H 1.09000 * 109.46507 * 59.99957 * 15 14 13 40 40 H 1.07999 * 120.00208 * 359.97438 * 19 18 16 41 41 H 1.07999 * 120.00303 * 180.23401 * 20 19 18 42 42 H 1.07997 * 120.00560 * 179.72326 * 21 20 19 43 43 H 1.08003 * 120.00585 * 179.97438 * 22 21 20 44 44 H 1.08005 * 119.99917 * 0.02562 * 23 18 16 45 45 H 1.08999 * 110.67196 * 278.15211 * 25 24 16 46 46 H 1.08993 * 110.66967 * 41.28993 * 25 24 16 47 47 H 1.09007 * 110.72454 * 204.23111 * 26 25 24 48 48 H 1.09002 * 110.72522 * 80.94700 * 26 25 24 49 49 H 1.09003 * 110.30955 * 263.03733 * 27 26 25 50 50 H 1.09005 * 110.30501 * 140.87833 * 27 26 25 51 51 H 1.08998 * 109.91729 * 333.50664 * 28 24 16 52 52 H 1.09001 * 109.91650 * 94.80586 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9745 2.3756 7 6 1.9933 -0.4019 3.7282 8 7 2.6722 -1.5215 3.8512 9 14 1.4985 0.5624 5.2496 10 1 2.5662 1.5381 5.5861 11 1 0.2302 1.2880 4.9850 12 1 1.3058 -0.3724 6.3872 13 6 2.0400 -0.7212 -1.2494 14 7 1.6514 0.0376 -2.4457 15 6 2.1248 -0.6268 -3.6674 16 6 1.7025 0.1913 -4.8893 17 1 0.6151 0.1950 -4.9659 18 6 2.2915 -0.4228 -6.1330 19 6 1.5571 -0.4524 -7.3037 20 6 2.0993 -1.0113 -8.4458 21 6 3.3720 -1.5500 -8.4145 22 6 4.1045 -1.5251 -7.2425 23 6 3.5642 -0.9615 -6.1016 24 7 2.1880 1.5704 -4.7469 25 6 3.6705 1.6230 -4.8206 26 6 3.9551 3.1024 -5.1825 27 6 2.8064 3.4468 -6.1580 28 6 1.6987 2.4214 -5.8531 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.1264 -0.7995 1.2055 33 1 1.6055 -1.7199 1.2950 34 1 2.9288 -2.0224 3.0612 35 1 3.1263 -0.7994 -1.2057 36 1 1.6054 -1.7197 -1.2953 37 1 0.6527 0.1794 -2.4754 38 1 3.2117 -0.7048 -3.6406 39 1 1.6904 -1.6246 -3.7298 40 1 0.5609 -0.0358 -7.3269 41 1 1.5270 -1.0311 -9.3615 42 1 3.7940 -1.9907 -9.3056 43 1 5.0987 -1.9463 -7.2179 44 1 4.1362 -0.9427 -5.1857 45 1 4.1129 1.3708 -3.8569 46 1 4.0407 0.9581 -5.6009 47 1 4.9223 3.1997 -5.6758 48 1 3.9089 3.7325 -4.2942 49 1 3.1428 3.3449 -7.1898 50 1 2.4456 4.4591 -5.9753 51 1 1.5059 1.8100 -6.7346 52 1 0.7880 2.9378 -5.5495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602506484.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:33 Heat of formation + Delta-G solvation = 17.614255 kcal Electronic energy + Delta-G solvation = -26875.527026 eV Core-core repulsion = 23452.922874 eV Total energy + Delta-G solvation = -3422.604152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66194 -38.18776 -36.94109 -34.76746 -33.10284 -31.62049 -31.33625 -30.14910 -28.88307 -27.49528 -26.40794 -24.89345 -23.61679 -22.71780 -21.92796 -21.85101 -20.79287 -20.02315 -19.08581 -17.17020 -16.70068 -16.59401 -15.99188 -15.61712 -15.43782 -14.67183 -14.43402 -14.31731 -13.93021 -13.81241 -13.66752 -13.47558 -13.31347 -12.98769 -12.78469 -12.44283 -12.29082 -12.13745 -11.64442 -11.59903 -11.56655 -11.53115 -11.39629 -11.18088 -11.07695 -10.99684 -10.77773 -10.64214 -10.61882 -10.14144 -10.02967 -9.76251 -9.37483 -9.15929 -9.01594 -8.41570 -8.33369 -8.24117 -7.97795 -6.27169 -3.94641 1.03514 1.09655 3.45958 3.48532 3.52130 3.67669 3.93333 4.24238 4.49771 4.56653 4.61528 4.65523 4.69064 4.77653 4.84379 4.90913 5.02281 5.17990 5.23372 5.24886 5.30099 5.44652 5.49303 5.58419 5.63424 5.67357 5.68657 5.73119 5.74416 5.75987 5.79623 5.89773 5.92045 6.04994 6.05957 6.09696 6.16288 6.22262 6.24814 6.30997 6.46663 6.55790 6.69837 6.88746 6.89599 6.99867 7.10248 7.12369 7.42604 7.50466 7.67010 7.77898 8.33739 8.56943 8.98658 9.76685 11.13404 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019075 B = 0.002577 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.543454 B =10863.113432 C =11471.757168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 H 0.067 0.933 4 C 0.015 3.985 5 C -0.591 4.591 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.286 1.286 13 C 0.064 3.936 14 N -0.669 5.669 15 C 0.070 3.930 16 C 0.116 3.884 17 H 0.086 0.914 18 C -0.112 4.112 19 C -0.109 4.109 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.105 4.105 24 N -0.473 5.473 25 C 0.022 3.978 26 C -0.123 4.123 27 C -0.128 4.128 28 C 0.025 3.975 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.005 0.995 33 H 0.004 0.996 34 H 0.268 0.732 35 H 0.062 0.938 36 H 0.018 0.982 37 H 0.338 0.662 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.047 0.953 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 3.769 -27.910 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.094 4.094 3 H 0.086 0.914 4 C -0.023 4.023 5 C -0.630 4.630 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.555 5.555 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.212 1.212 13 C -0.064 4.064 14 N -0.300 5.300 15 C -0.060 4.060 16 C 0.007 3.993 17 H 0.104 0.896 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.124 4.124 24 N -0.195 5.195 25 C -0.105 4.105 26 C -0.161 4.161 27 C -0.166 4.166 28 C -0.103 4.103 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.022 0.978 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.036 0.964 37 H 0.157 0.843 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.104 0.896 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.065 0.935 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.636 4.408 -25.679 26.062 hybrid contribution -0.398 -1.189 -2.642 2.925 sum 0.238 3.219 -28.321 28.505 Atomic orbital electron populations 1.21717 0.96565 1.00223 1.00451 1.21047 0.94917 1.00029 0.93379 0.91436 1.19240 0.95264 0.95369 0.92416 1.22073 1.38454 1.10189 0.92261 0.93170 1.25817 0.94812 0.97159 1.01378 1.70742 1.36487 1.14777 1.33486 0.83536 0.75981 0.75235 0.75401 1.21540 1.21529 1.21150 1.22134 1.00006 0.94224 0.90079 1.60418 1.19586 1.49645 1.00355 1.21961 1.00651 0.93968 0.89410 1.20890 0.99346 0.88611 0.90462 0.89608 1.20574 0.95313 0.98926 0.96586 1.21068 0.99623 0.99489 0.92623 1.21129 0.95831 0.98896 0.98194 1.21153 0.94854 0.99842 0.98062 1.21184 1.00054 0.99674 0.93082 1.21181 0.95288 0.97258 0.98661 1.65176 1.07228 1.06456 1.40623 1.23545 0.88938 0.96423 1.01634 1.22451 0.97600 0.96613 0.99404 1.22344 0.95865 0.99369 0.99043 1.22977 0.98682 0.95242 0.93383 0.94321 0.91868 0.94679 0.97713 0.97805 0.92179 0.91901 0.96367 0.84342 0.91125 0.95339 0.86219 0.86193 0.86243 0.86036 0.85612 0.89643 0.92637 0.91601 0.90636 0.92107 0.91261 0.93466 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.77 37.16 0.33 -2.24 16 2 C -0.07 -1.58 2.54 -90.62 -0.23 -1.81 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 4 C 0.01 0.38 3.76 -27.88 -0.10 0.27 16 5 C -0.59 -17.04 8.41 -34.44 -0.29 -17.33 16 6 H 0.05 1.43 7.06 -52.48 -0.37 1.06 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.72 13.65 55.43 0.76 -27.97 16 9 Si 1.07 25.94 29.90 -169.99 -5.08 20.86 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.06 1.14 5.14 -3.82 -0.02 1.12 16 14 N -0.67 -10.01 6.23 -113.78 -0.71 -10.71 16 15 C 0.07 0.88 4.60 -3.82 -0.02 0.86 16 16 C 0.12 1.26 2.30 -68.87 -0.16 1.11 16 17 H 0.09 0.92 8.02 -51.93 -0.42 0.51 16 18 C -0.11 -1.11 3.86 -104.63 -0.40 -1.52 16 19 C -0.11 -0.99 8.03 -39.58 -0.32 -1.30 16 20 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 21 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 22 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 23 C -0.11 -1.03 6.67 -39.58 -0.26 -1.29 16 24 N -0.47 -5.42 4.99 -223.90 -1.12 -6.53 16 25 C 0.02 0.24 5.07 -1.90 -0.01 0.23 16 26 C -0.12 -1.21 7.06 -24.87 -0.18 -1.38 16 27 C -0.13 -1.16 6.93 -25.38 -0.18 -1.34 16 28 C 0.03 0.25 6.47 -2.76 -0.02 0.23 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.34 6.95 -51.93 -0.36 0.98 16 31 H 0.03 0.58 6.68 -51.93 -0.35 0.23 16 32 H 0.00 0.13 8.01 -51.93 -0.42 -0.29 16 33 H 0.00 0.10 8.00 -51.93 -0.42 -0.31 16 34 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.34 4.94 6.98 -39.29 -0.27 4.66 16 38 H 0.07 0.90 5.55 -51.93 -0.29 0.61 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.12 0.94 7.83 -52.49 -0.41 0.53 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.13 1.22 5.71 -52.48 -0.30 0.92 16 45 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 46 H 0.06 0.59 4.38 -51.93 -0.23 0.36 16 47 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.05 0.44 5.28 -51.93 -0.27 0.17 16 52 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -31.16 392.42 -12.48 -43.65 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -9.10 Total: 3.18 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -3.15 Total: -28.38 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -1.07 Total: -45.22 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.08 Total: 20.86 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.16 -12.48 -43.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506484.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.261 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds