Wall clock time and date at job start Tue Mar 31 2020 11:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46950 * 2 1 4 4 C 1.52999 * 109.47381 * 120.00529 * 2 1 3 5 5 C 1.50700 * 109.46758 * 294.99932 * 4 2 1 6 6 H 1.08003 * 119.99954 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00024 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99408 * 359.72094 * 7 5 4 9 9 Si 1.86792 * 119.99983 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47268 * 269.72111 * 9 7 5 11 11 H 1.48502 * 109.47562 * 29.72646 * 9 7 5 12 12 H 1.48504 * 109.47281 * 149.72462 * 9 7 5 13 13 C 1.53009 * 109.47312 * 240.00540 * 2 1 3 14 14 N 1.46897 * 109.46970 * 64.99700 * 13 2 1 15 15 C 1.46907 * 111.00107 * 180.02562 * 14 13 2 16 16 C 1.52991 * 109.47508 * 180.02562 * 15 14 13 17 17 H 1.09004 * 109.47050 * 295.00190 * 16 15 14 18 18 C 1.50695 * 109.47323 * 175.00238 * 16 15 14 19 19 C 1.38231 * 120.00106 * 142.17305 * 18 16 15 20 20 C 1.38238 * 119.99781 * 179.76430 * 19 18 16 21 21 C 1.38231 * 120.00050 * 0.50438 * 20 19 18 22 22 C 1.38234 * 120.00197 * 359.74754 * 21 20 19 23 23 C 1.38238 * 119.99675 * 322.44432 * 18 16 15 24 24 N 1.46901 * 109.47406 * 54.99685 * 16 15 14 25 25 C 1.48530 * 110.99582 * 67.53214 * 24 16 15 26 26 C 1.54940 * 103.22372 * 159.72394 * 25 24 16 27 27 C 1.54594 * 102.92055 * 322.58481 * 26 25 24 28 28 C 1.47896 * 111.00173 * 184.93127 * 24 16 15 29 29 H 1.09003 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47223 * 299.99383 * 1 2 3 31 31 H 1.09006 * 109.47135 * 59.99962 * 1 2 3 32 32 H 1.09004 * 109.47230 * 175.00457 * 4 2 1 33 33 H 1.08995 * 109.47127 * 55.00205 * 4 2 1 34 34 H 0.96992 * 120.00416 * 0.27985 * 8 7 5 35 35 H 1.08992 * 109.47207 * 184.99926 * 13 2 1 36 36 H 1.08995 * 109.46561 * 304.99805 * 13 2 1 37 37 H 1.00909 * 111.00362 * 303.95399 * 14 13 2 38 38 H 1.09000 * 109.46564 * 300.00500 * 15 14 13 39 39 H 1.09000 * 109.46507 * 59.99957 * 15 14 13 40 40 H 1.07999 * 120.00208 * 359.97438 * 19 18 16 41 41 H 1.07999 * 120.00303 * 180.23401 * 20 19 18 42 42 H 1.07997 * 120.00560 * 179.72326 * 21 20 19 43 43 H 1.08003 * 120.00585 * 179.97438 * 22 21 20 44 44 H 1.08005 * 119.99917 * 0.02562 * 23 18 16 45 45 H 1.08999 * 110.67196 * 278.15211 * 25 24 16 46 46 H 1.08993 * 110.66967 * 41.28993 * 25 24 16 47 47 H 1.09007 * 110.72454 * 204.23111 * 26 25 24 48 48 H 1.09002 * 110.72522 * 80.94700 * 26 25 24 49 49 H 1.09003 * 110.30955 * 263.03733 * 27 26 25 50 50 H 1.09005 * 110.30501 * 140.87833 * 27 26 25 51 51 H 1.08998 * 109.91729 * 333.50664 * 28 24 16 52 52 H 1.09001 * 109.91650 * 94.80586 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9745 2.3756 7 6 1.9933 -0.4019 3.7282 8 7 2.6722 -1.5215 3.8512 9 14 1.4985 0.5624 5.2496 10 1 2.5662 1.5381 5.5861 11 1 0.2302 1.2880 4.9850 12 1 1.3058 -0.3724 6.3872 13 6 2.0400 -0.7212 -1.2494 14 7 1.6514 0.0376 -2.4457 15 6 2.1248 -0.6268 -3.6674 16 6 1.7025 0.1913 -4.8893 17 1 0.6151 0.1950 -4.9659 18 6 2.2915 -0.4228 -6.1330 19 6 1.5571 -0.4524 -7.3037 20 6 2.0993 -1.0113 -8.4458 21 6 3.3720 -1.5500 -8.4145 22 6 4.1045 -1.5251 -7.2425 23 6 3.5642 -0.9615 -6.1016 24 7 2.1880 1.5704 -4.7469 25 6 3.6705 1.6230 -4.8206 26 6 3.9551 3.1024 -5.1825 27 6 2.8064 3.4468 -6.1580 28 6 1.6987 2.4214 -5.8531 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.1264 -0.7995 1.2055 33 1 1.6055 -1.7199 1.2950 34 1 2.9288 -2.0224 3.0612 35 1 3.1263 -0.7994 -1.2057 36 1 1.6054 -1.7197 -1.2953 37 1 0.6527 0.1794 -2.4754 38 1 3.2117 -0.7048 -3.6406 39 1 1.6904 -1.6246 -3.7298 40 1 0.5609 -0.0358 -7.3269 41 1 1.5270 -1.0311 -9.3615 42 1 3.7940 -1.9907 -9.3056 43 1 5.0987 -1.9463 -7.2179 44 1 4.1362 -0.9427 -5.1857 45 1 4.1129 1.3708 -3.8569 46 1 4.0407 0.9581 -5.6009 47 1 4.9223 3.1997 -5.6758 48 1 3.9089 3.7325 -4.2942 49 1 3.1428 3.3449 -7.1898 50 1 2.4456 4.4591 -5.9753 51 1 1.5059 1.8100 -6.7346 52 1 0.7880 2.9378 -5.5495 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602506484.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:32 Heat of formation + Delta-G solvation = -0.324763 kcal Electronic energy + Delta-G solvation = -26876.304921 eV Core-core repulsion = 23452.922874 eV Total energy + Delta-G solvation = -3423.382046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43128 -38.93919 -38.42172 -36.18913 -34.67996 -33.10782 -32.05103 -30.89081 -29.68427 -28.86556 -28.13896 -26.39681 -24.74292 -24.08616 -23.02623 -22.65467 -21.54819 -21.07325 -20.61399 -18.87750 -17.86211 -17.57820 -16.78262 -16.59270 -16.34941 -15.85917 -15.64749 -15.48708 -15.35831 -15.08742 -14.94546 -14.55996 -14.38797 -14.01449 -13.86060 -13.56427 -13.50921 -13.34482 -13.18452 -13.02690 -12.84577 -12.54742 -12.34038 -12.30546 -12.22275 -12.10980 -11.94676 -11.93362 -11.78648 -11.60832 -11.57137 -11.40754 -11.25777 -10.55945 -10.51333 -9.81890 -9.69979 -9.27232 -9.13589 -8.64964 -6.33505 0.36633 0.44139 1.52370 1.61909 1.79347 2.58125 2.77598 3.07214 3.19310 3.24931 3.67320 3.77076 3.91326 3.94226 4.08182 4.09925 4.11958 4.16713 4.24322 4.25874 4.33156 4.37859 4.44408 4.55667 4.60614 4.63829 4.68524 4.69959 4.77645 4.83377 4.90502 4.94739 4.95496 4.99203 5.03102 5.04792 5.09398 5.11735 5.23479 5.26333 5.32312 5.33948 5.50080 5.52220 5.58514 5.60709 5.66024 5.99883 6.06084 6.06728 6.10020 6.23525 6.24421 6.55525 6.63387 7.47358 8.75798 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019075 B = 0.002577 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.543454 B =10863.113432 C =11471.757168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.066 4.066 3 H 0.053 0.947 4 C 0.017 3.983 5 C -0.603 4.603 6 H 0.052 0.948 7 C -0.044 4.044 8 N -0.943 5.943 9 Si 1.118 2.882 10 H -0.274 1.274 11 H -0.268 1.268 12 H -0.283 1.283 13 C 0.079 3.921 14 N -0.667 5.667 15 C 0.074 3.926 16 C 0.124 3.876 17 H 0.089 0.911 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.130 4.130 23 C -0.119 4.119 24 N -0.491 5.491 25 C 0.024 3.976 26 C -0.122 4.122 27 C -0.124 4.124 28 C 0.025 3.975 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.068 0.932 32 H -0.019 1.019 33 H -0.015 1.015 34 H 0.254 0.746 35 H 0.052 0.948 36 H 0.019 0.981 37 H 0.343 0.657 38 H 0.065 0.935 39 H 0.030 0.970 40 H 0.131 0.869 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.118 0.882 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.054 0.946 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 4.714 -29.967 30.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.020 4.020 5 C -0.641 4.641 6 H 0.070 0.930 7 C -0.240 4.240 8 N -0.581 5.581 9 Si 0.940 3.060 10 H -0.199 1.199 11 H -0.193 1.193 12 H -0.209 1.209 13 C -0.050 4.050 14 N -0.299 5.299 15 C -0.056 4.056 16 C 0.015 3.985 17 H 0.107 0.893 18 C -0.123 4.123 19 C -0.134 4.134 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.138 4.138 24 N -0.213 5.213 25 C -0.103 4.103 26 C -0.160 4.160 27 C -0.162 4.162 28 C -0.102 4.102 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.087 0.913 32 H -0.001 1.001 33 H 0.004 0.996 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.037 0.963 37 H 0.162 0.838 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.149 0.851 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.153 0.847 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.073 0.927 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.341 5.358 -27.773 28.287 hybrid contribution -0.063 -1.520 -2.083 2.580 sum -0.404 3.839 -29.856 30.105 Atomic orbital electron populations 1.21616 0.94859 1.00496 1.01121 1.20857 0.96249 0.98702 0.92676 0.92812 1.19177 0.93699 0.94752 0.94396 1.22457 1.37934 1.10298 0.93392 0.93010 1.27417 0.94103 0.97283 1.05233 1.70883 1.38369 1.16061 1.32798 0.82924 0.76959 0.74382 0.71768 1.19917 1.19295 1.20902 1.21808 0.99185 0.94008 0.89997 1.60342 1.19938 1.49408 1.00213 1.21969 1.00334 0.94258 0.89038 1.20735 0.99445 0.88284 0.90012 0.89262 1.20472 0.95579 0.99732 0.96514 1.21239 1.00079 0.99589 0.92511 1.21436 0.96025 0.98060 0.98727 1.21471 0.94837 0.99293 0.98533 1.21412 1.00843 0.99491 0.93024 1.21210 0.95484 0.98148 0.98948 1.65131 1.07374 1.06966 1.41800 1.23465 0.88909 0.97348 1.00608 1.22446 0.98732 0.95525 0.99342 1.22332 0.95115 0.99444 0.99270 1.22996 0.98856 0.95237 0.93124 0.94212 0.93839 0.91291 1.00078 0.99634 0.93694 0.92974 0.96326 0.83801 0.91622 0.95185 0.85130 0.84011 0.84086 0.84739 0.86428 0.91899 0.92067 0.90392 0.91841 0.91057 0.90634 0.92734 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.71 8.77 71.98 0.63 -4.08 16 2 C -0.07 -2.81 2.54 -10.79 -0.03 -2.84 16 3 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.02 0.93 3.76 29.85 0.11 1.04 16 5 C -0.60 -35.31 8.41 25.60 0.22 -35.09 16 6 H 0.05 2.96 7.06 -2.91 -0.02 2.94 16 7 C -0.04 -2.62 5.46 84.66 0.46 -2.16 16 8 N -0.94 -60.34 13.65 21.45 0.29 -60.05 16 9 Si 1.12 51.89 29.90 68.60 2.05 53.94 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.08 2.84 5.14 86.31 0.44 3.29 16 14 N -0.67 -19.67 6.23 -513.89 -3.20 -22.87 16 15 C 0.07 1.83 4.60 86.30 0.40 2.22 16 16 C 0.12 2.59 2.30 44.16 0.10 2.69 16 17 H 0.09 1.79 8.02 -2.38 -0.02 1.77 16 18 C -0.12 -2.26 3.86 -19.87 -0.08 -2.33 16 19 C -0.12 -1.84 8.03 22.27 0.18 -1.66 16 20 C -0.12 -1.71 10.05 22.27 0.22 -1.48 16 21 C -0.12 -1.70 10.05 22.27 0.22 -1.47 16 22 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 23 C -0.12 -2.24 6.67 22.27 0.15 -2.10 16 24 N -0.49 -10.84 4.99 -862.29 -4.30 -15.14 16 25 C 0.02 0.53 5.07 86.65 0.44 0.97 16 26 C -0.12 -2.32 7.06 31.80 0.22 -2.09 16 27 C -0.12 -2.03 6.93 31.47 0.22 -1.81 16 28 C 0.03 0.47 6.47 86.45 0.56 1.02 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.81 6.95 -2.39 -0.02 1.79 16 31 H 0.07 2.15 6.68 -2.38 -0.02 2.13 16 32 H -0.02 -1.11 8.01 -2.38 -0.02 -1.12 16 33 H -0.01 -0.84 8.00 -2.39 -0.02 -0.86 16 34 H 0.25 16.47 7.22 -92.71 -0.67 15.80 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.34 9.53 6.98 -89.69 -0.63 8.90 16 38 H 0.07 1.70 5.55 -2.39 -0.01 1.69 16 39 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.13 1.73 7.83 -2.91 -0.02 1.70 16 41 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 42 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.13 1.69 8.06 -2.91 -0.02 1.66 16 44 H 0.12 2.33 5.71 -2.91 -0.02 2.31 16 45 H 0.06 1.63 7.85 -2.39 -0.02 1.61 16 46 H 0.06 1.27 4.38 -2.39 -0.01 1.26 16 47 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 48 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 51 H 0.05 0.91 5.28 -2.39 -0.01 0.90 16 52 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -67.75 392.42 -0.10 -67.86 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.36 Total: 23.98 kcal Atomic # 6 Polarization: -52.42 SS G_CDS: 4.70 Total: -47.72 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -7.21 Total: -98.06 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.05 Total: 53.94 kcal Total: -67.75 -0.10 -67.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506484.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.533 kcal (2) G-P(sol) polarization free energy of solvation -67.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds