Wall clock time and date at job start Tue Mar 31 2020 11:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.46911 * 64.99645 * 16 15 14 18 18 C 1.50693 * 109.47564 * 185.00183 * 16 15 14 19 19 C 1.38240 * 120.00104 * 79.72388 * 18 16 15 20 20 C 1.38232 * 120.00283 * 179.76904 * 19 18 16 21 21 C 1.38239 * 119.99667 * 0.51034 * 20 19 18 22 22 C 1.38232 * 119.99957 * 359.74443 * 21 20 19 23 23 C 1.38230 * 120.00188 * 260.00287 * 18 16 15 24 24 N 1.46909 * 109.46857 * 305.00321 * 16 15 14 25 25 C 1.48530 * 111.00299 * 57.60527 * 24 16 15 26 26 C 1.54932 * 103.22900 * 159.71809 * 25 24 16 27 27 C 1.54600 * 102.92319 * 322.58568 * 26 25 24 28 28 C 1.47902 * 110.99608 * 174.99801 * 24 16 15 29 29 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 30 30 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 31 31 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 33 33 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 34 34 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 35 35 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 36 36 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 37 37 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 38 38 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 39 39 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 40 40 H 1.08006 * 119.99730 * 0.02562 * 19 18 16 41 41 H 1.08000 * 120.00612 * 180.22772 * 20 19 18 42 42 H 1.08000 * 119.99858 * 179.71995 * 21 20 19 43 43 H 1.08002 * 119.99828 * 179.97438 * 22 21 20 44 44 H 1.07999 * 119.99827 * 359.97438 * 23 18 16 45 45 H 1.09002 * 110.66148 * 278.15462 * 25 24 16 46 46 H 1.09002 * 110.66615 * 41.27871 * 25 24 16 47 47 H 1.08996 * 110.72733 * 204.22828 * 26 25 24 48 48 H 1.09008 * 110.72169 * 80.93981 * 26 25 24 49 49 H 1.08993 * 110.30633 * 263.04291 * 27 26 25 50 50 H 1.08999 * 110.30764 * 140.87055 * 27 26 25 51 51 H 1.08998 * 109.92369 * 333.51101 * 28 24 16 52 52 H 1.09004 * 109.91534 * 94.80134 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 1 2.2063 1.1569 -4.8721 18 6 2.0810 -0.5512 -6.1452 19 6 1.2886 -1.5884 -6.6008 20 6 1.6331 -2.2656 -7.7556 21 6 2.7757 -1.9126 -8.4491 22 6 3.5708 -0.8790 -7.9906 23 6 3.2235 -0.1983 -6.8387 24 7 0.2481 0.3957 -4.8611 25 6 -0.1695 1.0745 -3.6077 26 6 -1.5556 1.6649 -3.9692 27 6 -1.3682 2.1137 -5.4368 28 6 -0.1832 1.2829 -5.9631 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1263 -0.7995 1.2057 33 1 1.6053 -1.7197 1.2953 34 1 2.9286 -2.0221 3.0617 35 1 3.1263 -0.7997 -1.2054 36 1 1.6053 -1.7200 -1.2950 37 1 1.9883 0.9871 -2.3967 38 1 3.2127 -0.7042 -3.6399 39 1 1.6921 -1.6250 -3.7299 40 1 0.3982 -1.8669 -6.0568 41 1 1.0122 -3.0735 -8.1136 42 1 3.0473 -2.4447 -9.3488 43 1 4.4637 -0.6035 -8.5322 44 1 3.8447 0.6093 -6.4805 45 1 -0.2580 0.3564 -2.7925 46 1 0.5310 1.8683 -3.3483 47 1 -1.7897 2.5177 -3.3321 48 1 -2.3309 0.9023 -3.8952 49 1 -1.1333 3.1772 -5.4800 50 1 -2.2668 1.8999 -6.0154 51 1 0.6350 1.9434 -6.2501 52 1 -0.4993 0.6857 -6.8184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602506486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:37 Heat of formation + Delta-G solvation = 24.173862 kcal Electronic energy + Delta-G solvation = -26965.919867 eV Core-core repulsion = 23543.600161 eV Total energy + Delta-G solvation = -3422.319706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.16890 -38.48927 -36.85799 -34.78838 -33.18762 -31.68427 -31.06060 -30.11679 -28.70510 -27.48251 -26.35701 -24.98352 -23.07589 -22.77782 -22.12734 -21.48690 -20.75611 -20.27765 -19.19729 -17.06539 -16.68901 -16.50641 -15.90584 -15.45731 -15.21709 -14.55639 -14.43815 -14.24999 -13.95263 -13.72678 -13.56959 -13.39976 -13.23764 -13.04229 -12.76750 -12.63024 -12.31996 -12.02493 -11.82129 -11.60397 -11.33081 -11.32087 -11.23650 -11.11411 -10.99362 -10.87991 -10.74270 -10.67351 -10.50613 -10.20524 -10.07193 -9.79817 -9.43240 -9.06387 -8.87203 -8.45545 -8.40652 -8.28568 -7.96838 -6.31092 -3.99205 1.16918 1.26694 3.45620 3.47624 3.59759 3.66157 3.94396 4.23910 4.57325 4.61655 4.72699 4.75033 4.81430 4.86625 4.96819 5.01929 5.12529 5.14346 5.36175 5.38312 5.43492 5.45219 5.52183 5.56378 5.61719 5.72786 5.77428 5.80558 5.84791 5.87432 5.91479 5.95913 6.04511 6.08430 6.21962 6.29420 6.30194 6.36818 6.43685 6.46329 6.52301 6.69091 6.84360 6.88275 6.99240 7.07922 7.11192 7.15433 7.23429 7.42082 7.50755 7.61825 8.28122 8.51678 8.93930 9.72290 11.09328 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.002734 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.062772 B =10237.476500 C =11386.268959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 H 0.053 0.947 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.059 3.941 14 N -0.677 5.677 15 C 0.067 3.933 16 C 0.120 3.880 17 H 0.044 0.956 18 C -0.075 4.075 19 C -0.087 4.087 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.117 4.117 24 N -0.501 5.501 25 C 0.046 3.954 26 C -0.133 4.133 27 C -0.131 4.131 28 C 0.037 3.963 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.002 0.998 33 H 0.007 0.993 34 H 0.268 0.732 35 H 0.022 0.978 36 H 0.067 0.933 37 H 0.334 0.666 38 H 0.033 0.967 39 H 0.081 0.919 40 H 0.132 0.868 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.131 0.869 46 H 0.036 0.964 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.036 0.964 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 3.794 -25.612 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.023 4.023 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.215 1.215 13 C -0.070 4.070 14 N -0.307 5.307 15 C -0.063 4.063 16 C 0.011 3.989 17 H 0.062 0.938 18 C -0.076 4.076 19 C -0.106 4.106 20 C -0.144 4.144 21 C -0.142 4.142 22 C -0.142 4.142 23 C -0.135 4.135 24 N -0.225 5.225 25 C -0.081 4.081 26 C -0.171 4.171 27 C -0.170 4.170 28 C -0.091 4.091 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.020 0.980 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.152 0.848 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.150 0.850 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.148 0.852 46 H 0.054 0.946 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.055 0.945 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.931 2.995 -24.014 24.517 hybrid contribution 1.465 1.020 -1.765 2.511 sum -2.466 4.015 -25.779 26.206 Atomic orbital electron populations 1.21636 0.95458 1.00641 1.00360 1.21039 0.96138 0.98703 0.93389 0.92836 1.19241 0.95058 0.95639 0.92371 1.22026 1.38577 1.10257 0.92280 0.93240 1.25815 0.94766 0.97152 1.01374 1.70780 1.36311 1.14698 1.33485 0.83577 0.76079 0.75117 0.75709 1.20868 1.21562 1.21457 1.22217 0.97128 0.97947 0.89669 1.61340 1.62098 1.05658 1.01641 1.21981 0.97014 0.98776 0.88489 1.20706 0.89427 0.96637 0.92146 0.93783 1.19729 0.95107 0.96825 0.95940 1.21110 0.99449 0.94377 0.95623 1.21207 0.97217 1.00080 0.95896 1.21140 0.95412 0.97647 0.99970 1.21058 0.99814 0.96646 0.96720 1.21032 0.96749 1.00163 0.95583 1.64766 1.11013 1.43645 1.03106 1.23745 0.93001 0.97954 0.93385 1.22654 0.99029 1.00434 0.95024 1.22392 0.98205 0.99043 0.97313 1.22834 0.96567 0.94233 0.95478 0.92695 0.93557 0.94195 0.97991 0.97489 0.92187 0.95939 0.91428 0.84780 0.94909 0.90076 0.84974 0.86227 0.86434 0.86345 0.86535 0.85181 0.94559 0.91499 0.91134 0.92095 0.91596 0.94550 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 2 C -0.07 -1.47 2.48 -90.62 -0.22 -1.69 16 3 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.01 0.36 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -16.74 8.41 -34.44 -0.29 -17.02 16 6 H 0.05 1.37 7.06 -52.49 -0.37 1.00 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 8 N -0.92 -28.35 13.65 55.43 0.76 -27.59 16 9 Si 1.07 25.50 29.90 -169.99 -5.08 20.42 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.06 0.97 5.07 -3.82 -0.02 0.95 16 14 N -0.68 -9.02 2.17 -113.78 -0.25 -9.27 16 15 C 0.07 0.82 5.31 -3.82 -0.02 0.80 16 16 C 0.12 1.32 1.82 -68.86 -0.13 1.19 16 17 H 0.04 0.49 7.82 -51.93 -0.41 0.09 16 18 C -0.08 -0.80 4.24 -104.63 -0.44 -1.24 16 19 C -0.09 -0.92 9.19 -39.58 -0.36 -1.28 16 20 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 21 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 22 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.15 9.67 -39.58 -0.38 -1.53 16 24 N -0.50 -5.60 4.38 -223.88 -0.98 -6.59 16 25 C 0.05 0.54 4.66 -1.90 -0.01 0.53 16 26 C -0.13 -1.40 7.06 -24.87 -0.18 -1.57 16 27 C -0.13 -1.24 6.93 -25.37 -0.18 -1.42 16 28 C 0.04 0.38 5.89 -2.75 -0.02 0.36 16 29 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 30 H 0.05 0.74 6.02 -51.93 -0.31 0.43 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.00 0.05 8.01 -51.93 -0.42 -0.37 16 33 H 0.01 0.18 8.00 -51.93 -0.42 -0.23 16 34 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.33 4.32 7.59 -39.29 -0.30 4.03 16 38 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.13 1.44 7.73 -52.48 -0.41 1.03 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.12 1.02 8.04 -52.49 -0.42 0.60 16 45 H 0.13 1.77 4.51 -51.93 -0.23 1.54 16 46 H 0.04 0.43 6.90 -51.93 -0.36 0.08 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.04 0.38 7.65 -51.93 -0.40 -0.02 16 52 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -29.81 397.64 -12.28 -42.09 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -9.41 Total: 2.91 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -3.31 Total: -27.96 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.47 Total: -43.45 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.81 -12.28 -42.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.269 kcal (2) G-P(sol) polarization free energy of solvation -29.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds