Wall clock time and date at job start Tue Mar 31 2020 11:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.46911 * 64.99645 * 16 15 14 18 18 C 1.50693 * 109.47564 * 185.00183 * 16 15 14 19 19 C 1.38240 * 120.00104 * 79.72388 * 18 16 15 20 20 C 1.38232 * 120.00283 * 179.76904 * 19 18 16 21 21 C 1.38239 * 119.99667 * 0.51034 * 20 19 18 22 22 C 1.38232 * 119.99957 * 359.74443 * 21 20 19 23 23 C 1.38230 * 120.00188 * 260.00287 * 18 16 15 24 24 N 1.46909 * 109.46857 * 305.00321 * 16 15 14 25 25 C 1.48530 * 111.00299 * 57.60527 * 24 16 15 26 26 C 1.54932 * 103.22900 * 159.71809 * 25 24 16 27 27 C 1.54600 * 102.92319 * 322.58568 * 26 25 24 28 28 C 1.47902 * 110.99608 * 174.99801 * 24 16 15 29 29 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 30 30 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 31 31 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 33 33 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 34 34 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 35 35 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 36 36 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 37 37 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 38 38 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 39 39 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 40 40 H 1.08006 * 119.99730 * 0.02562 * 19 18 16 41 41 H 1.08000 * 120.00612 * 180.22772 * 20 19 18 42 42 H 1.08000 * 119.99858 * 179.71995 * 21 20 19 43 43 H 1.08002 * 119.99828 * 179.97438 * 22 21 20 44 44 H 1.07999 * 119.99827 * 359.97438 * 23 18 16 45 45 H 1.09002 * 110.66148 * 278.15462 * 25 24 16 46 46 H 1.09002 * 110.66615 * 41.27871 * 25 24 16 47 47 H 1.08996 * 110.72733 * 204.22828 * 26 25 24 48 48 H 1.09008 * 110.72169 * 80.93981 * 26 25 24 49 49 H 1.08993 * 110.30633 * 263.04291 * 27 26 25 50 50 H 1.08999 * 110.30764 * 140.87055 * 27 26 25 51 51 H 1.08998 * 109.92369 * 333.51101 * 28 24 16 52 52 H 1.09004 * 109.91534 * 94.80134 * 28 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 1 2.2063 1.1569 -4.8721 18 6 2.0810 -0.5512 -6.1452 19 6 1.2886 -1.5884 -6.6008 20 6 1.6331 -2.2656 -7.7556 21 6 2.7757 -1.9126 -8.4491 22 6 3.5708 -0.8790 -7.9906 23 6 3.2235 -0.1983 -6.8387 24 7 0.2481 0.3957 -4.8611 25 6 -0.1695 1.0745 -3.6077 26 6 -1.5556 1.6649 -3.9692 27 6 -1.3682 2.1137 -5.4368 28 6 -0.1832 1.2829 -5.9631 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1263 -0.7995 1.2057 33 1 1.6053 -1.7197 1.2953 34 1 2.9286 -2.0221 3.0617 35 1 3.1263 -0.7997 -1.2054 36 1 1.6053 -1.7200 -1.2950 37 1 1.9883 0.9871 -2.3967 38 1 3.2127 -0.7042 -3.6399 39 1 1.6921 -1.6250 -3.7299 40 1 0.3982 -1.8669 -6.0568 41 1 1.0122 -3.0735 -8.1136 42 1 3.0473 -2.4447 -9.3488 43 1 4.4637 -0.6035 -8.5322 44 1 3.8447 0.6093 -6.4805 45 1 -0.2580 0.3564 -2.7925 46 1 0.5310 1.8683 -3.3483 47 1 -1.7897 2.5177 -3.3321 48 1 -2.3309 0.9023 -3.8952 49 1 -1.1333 3.1772 -5.4800 50 1 -2.2668 1.8999 -6.0154 51 1 0.6350 1.9434 -6.2501 52 1 -0.4993 0.6857 -6.8184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602506486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:37 Heat of formation + Delta-G solvation = 9.897575 kcal Electronic energy + Delta-G solvation = -26966.538933 eV Core-core repulsion = 23543.600161 eV Total energy + Delta-G solvation = -3422.938772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.00655 -39.30504 -38.25485 -36.18750 -34.69937 -33.21791 -31.76934 -30.91826 -29.61024 -28.82436 -28.02443 -26.41912 -24.67204 -23.64169 -23.26474 -22.33280 -21.73800 -21.21472 -20.66261 -18.84799 -17.78581 -17.46067 -16.79408 -16.32336 -16.27874 -15.91415 -15.71214 -15.48744 -15.30544 -14.99249 -14.76503 -14.49719 -14.17615 -14.04558 -13.78229 -13.70254 -13.53542 -13.40247 -13.17555 -12.96503 -12.72761 -12.70945 -12.44976 -12.12243 -12.09525 -11.96165 -11.90203 -11.82011 -11.79149 -11.62387 -11.50566 -11.34640 -11.22715 -10.55826 -10.51461 -9.78282 -9.61501 -9.33414 -9.07232 -8.64613 -6.33617 0.44025 0.54536 1.52551 1.61193 1.79893 2.58281 2.83885 3.07425 3.16417 3.19500 3.74097 3.90694 3.96247 4.02098 4.08094 4.15755 4.18403 4.22950 4.27367 4.29511 4.35387 4.42321 4.52072 4.54397 4.67074 4.72956 4.74616 4.82384 4.83363 4.85636 4.92910 4.95012 5.03663 5.08965 5.10154 5.12429 5.20806 5.25832 5.33931 5.37851 5.40207 5.49371 5.58047 5.62814 5.66190 5.70376 5.75926 5.91875 6.08962 6.11982 6.17648 6.22221 6.23871 6.39108 6.63007 7.47564 8.76022 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.002734 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.062772 B =10237.476500 C =11386.268959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.064 4.064 3 H 0.053 0.947 4 C 0.016 3.984 5 C -0.603 4.603 6 H 0.054 0.946 7 C -0.044 4.044 8 N -0.943 5.943 9 Si 1.115 2.885 10 H -0.286 1.286 11 H -0.269 1.269 12 H -0.269 1.269 13 C 0.075 3.925 14 N -0.665 5.665 15 C 0.073 3.927 16 C 0.129 3.871 17 H 0.045 0.955 18 C -0.087 4.087 19 C -0.099 4.099 20 C -0.132 4.132 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.127 4.127 24 N -0.507 5.507 25 C 0.047 3.953 26 C -0.132 4.132 27 C -0.126 4.126 28 C 0.040 3.960 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.032 0.968 32 H -0.020 1.020 33 H -0.016 1.016 34 H 0.253 0.747 35 H 0.015 0.985 36 H 0.060 0.940 37 H 0.341 0.659 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.123 0.877 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.125 0.875 45 H 0.112 0.888 46 H 0.035 0.965 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.036 0.964 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 5.202 -27.291 28.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.021 4.021 5 C -0.641 4.641 6 H 0.072 0.928 7 C -0.241 4.241 8 N -0.582 5.582 9 Si 0.936 3.064 10 H -0.212 1.212 11 H -0.194 1.194 12 H -0.194 1.194 13 C -0.055 4.055 14 N -0.296 5.296 15 C -0.057 4.057 16 C 0.020 3.980 17 H 0.063 0.937 18 C -0.088 4.088 19 C -0.118 4.118 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.145 4.145 24 N -0.232 5.232 25 C -0.080 4.080 26 C -0.170 4.170 27 C -0.164 4.164 28 C -0.088 4.088 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.051 0.949 32 H -0.002 1.002 33 H 0.003 0.997 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.079 0.921 37 H 0.159 0.841 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.141 0.859 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.143 0.857 45 H 0.130 0.870 46 H 0.053 0.947 47 H 0.091 0.909 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.093 0.907 51 H 0.054 0.946 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.480 4.413 -25.731 26.488 hybrid contribution 1.655 0.539 -1.342 2.197 sum -2.826 4.953 -27.072 27.666 Atomic orbital electron populations 1.21533 0.94328 1.00318 1.00858 1.20854 0.96909 0.98116 0.92406 0.92845 1.19188 0.93545 0.94882 0.94523 1.22437 1.37866 1.10401 0.93356 0.92812 1.27399 0.94125 0.97276 1.05257 1.70919 1.38381 1.16072 1.32782 0.82967 0.76994 0.74560 0.71852 1.21179 1.19380 1.19368 1.21881 0.96347 0.97500 0.89726 1.61312 1.61870 1.05607 1.00800 1.21934 0.96891 0.98452 0.88389 1.20579 0.89346 0.96378 0.91704 0.93671 1.19720 0.95787 0.97244 0.96020 1.21113 0.99415 0.94922 0.96325 1.21444 0.97740 1.00314 0.95501 1.21461 0.94904 0.97497 1.00534 1.21364 1.00474 0.96355 0.96429 1.21218 0.96622 1.00672 0.96016 1.64736 1.11147 1.44043 1.03229 1.23611 0.93877 0.97404 0.93135 1.22626 0.97992 1.00465 0.95917 1.22375 0.98207 0.99345 0.96515 1.22806 0.96840 0.94080 0.95029 0.94611 0.90507 0.94917 1.00221 0.99725 0.93737 0.96726 0.92134 0.84090 0.94885 0.91130 0.85940 0.84698 0.84184 0.84314 0.85704 0.87040 0.94713 0.90900 0.91586 0.91226 0.90702 0.94601 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.22 8.89 71.98 0.64 -3.58 16 2 C -0.06 -2.55 2.48 -10.79 -0.03 -2.58 16 3 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.02 0.84 3.76 29.85 0.11 0.96 16 5 C -0.60 -34.42 8.41 25.60 0.22 -34.20 16 6 H 0.05 2.97 7.06 -2.91 -0.02 2.95 16 7 C -0.04 -2.59 5.46 84.65 0.46 -2.13 16 8 N -0.94 -59.79 13.65 21.45 0.29 -59.49 16 9 Si 1.11 50.91 29.90 68.60 2.05 52.96 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 13 C 0.07 2.49 5.07 86.31 0.44 2.92 16 14 N -0.67 -17.33 2.17 -513.89 -1.12 -18.44 16 15 C 0.07 1.74 5.31 86.30 0.46 2.20 16 16 C 0.13 2.72 1.82 44.17 0.08 2.80 16 17 H 0.05 0.95 7.82 -2.39 -0.02 0.93 16 18 C -0.09 -1.76 4.24 -19.87 -0.08 -1.85 16 19 C -0.10 -2.01 9.19 22.27 0.20 -1.81 16 20 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 21 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 22 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 23 C -0.13 -2.31 9.67 22.27 0.22 -2.10 16 24 N -0.51 -10.84 4.38 -862.23 -3.78 -14.62 16 25 C 0.05 1.04 4.66 86.65 0.40 1.45 16 26 C -0.13 -2.55 7.06 31.80 0.22 -2.33 16 27 C -0.13 -2.13 6.93 31.47 0.22 -1.92 16 28 C 0.04 0.77 5.89 86.45 0.51 1.27 16 29 H 0.03 1.45 6.95 -2.39 -0.02 1.43 16 30 H 0.08 2.38 6.02 -2.39 -0.01 2.37 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H -0.02 -1.15 8.01 -2.39 -0.02 -1.17 16 33 H -0.02 -0.88 8.00 -2.39 -0.02 -0.90 16 34 H 0.25 16.29 7.22 -92.71 -0.67 15.62 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 37 H 0.34 8.41 7.59 -89.69 -0.68 7.73 16 38 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.12 2.65 7.73 -2.91 -0.02 2.63 16 41 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.12 1.99 8.04 -2.91 -0.02 1.96 16 45 H 0.11 2.91 4.51 -2.39 -0.01 2.90 16 46 H 0.03 0.78 6.90 -2.39 -0.02 0.76 16 47 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 49 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.04 0.69 7.65 -2.39 -0.02 0.67 16 52 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -64.87 397.64 2.48 -62.39 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.29 Total: 23.64 kcal Atomic # 6 Polarization: -51.17 SS G_CDS: 4.74 Total: -46.43 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -4.60 Total: -92.56 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -64.87 2.48 -62.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.287 kcal (2) G-P(sol) polarization free energy of solvation -64.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds