Wall clock time and date at job start Tue Mar 31 2020 11:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47144 * 2 1 4 4 C 1.53002 * 109.47403 * 120.00394 * 2 1 3 5 5 C 1.50698 * 109.46758 * 295.00209 * 4 2 1 6 6 H 1.08000 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00009 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99949 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00444 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46933 * 59.99571 * 9 7 5 11 11 H 1.48499 * 109.47265 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47014 * 299.99924 * 9 7 5 13 13 C 1.53002 * 109.46853 * 240.00322 * 2 1 3 14 14 N 1.46898 * 109.47169 * 65.00090 * 13 2 1 15 15 C 1.46898 * 111.00183 * 174.81784 * 14 13 2 16 16 H 1.09004 * 109.47427 * 36.72589 * 15 14 13 17 17 C 1.53008 * 109.47089 * 276.73455 * 15 14 13 18 18 N 1.46903 * 109.46413 * 302.43974 * 17 15 14 19 19 C 1.48530 * 111.00032 * 61.20065 * 18 17 15 20 20 C 1.54934 * 103.22996 * 159.71682 * 19 18 17 21 21 C 1.54593 * 102.92062 * 322.58294 * 20 19 18 22 22 C 1.47907 * 110.99272 * 178.58921 * 18 17 15 23 23 C 1.50693 * 109.47629 * 156.73308 * 15 14 13 24 24 C 1.38241 * 120.00008 * 43.59029 * 23 15 14 25 25 C 1.38229 * 119.99947 * 179.79114 * 24 23 15 26 26 C 1.38237 * 120.00209 * 0.44113 * 25 24 23 27 27 C 1.38234 * 119.99707 * 359.81591 * 26 25 24 28 28 C 1.38227 * 120.00378 * 359.97238 * 27 26 25 29 29 H 1.08996 * 109.47534 * 59.99867 * 1 2 3 30 30 H 1.08997 * 109.46879 * 299.99421 * 1 2 3 31 31 H 1.09005 * 109.47100 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46718 * 54.99702 * 4 2 1 33 33 H 1.08998 * 109.47147 * 174.99738 * 4 2 1 34 34 H 0.97003 * 120.00245 * 180.02562 * 8 7 5 35 35 H 1.09008 * 109.47105 * 184.99756 * 13 2 1 36 36 H 1.09000 * 109.47020 * 304.99587 * 13 2 1 37 37 H 1.00900 * 110.99937 * 298.76471 * 14 13 2 38 38 H 1.08999 * 109.46761 * 62.43827 * 17 15 14 39 39 H 1.08998 * 109.47102 * 182.44527 * 17 15 14 40 40 H 1.09009 * 110.66172 * 278.14727 * 19 18 17 41 41 H 1.08994 * 110.67203 * 41.27491 * 19 18 17 42 42 H 1.08994 * 110.72693 * 204.22498 * 20 19 18 43 43 H 1.09007 * 110.72545 * 80.93915 * 20 19 18 44 44 H 1.09001 * 110.31309 * 263.04109 * 21 20 19 45 45 H 1.09001 * 110.31204 * 140.87209 * 21 20 19 46 46 H 1.08996 * 109.91851 * 333.51039 * 22 18 17 47 47 H 1.09004 * 109.91248 * 94.61096 * 22 18 17 48 48 H 1.08001 * 119.99865 * 359.97438 * 24 23 15 49 49 H 1.08007 * 120.00195 * 180.27212 * 25 24 23 50 50 H 1.08001 * 119.99915 * 179.83124 * 26 25 24 51 51 H 1.07999 * 119.99684 * 180.02562 * 27 26 25 52 52 H 1.08001 * 120.00340 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 0.0569 2.4765 6 1 1.0806 0.9744 2.3757 7 6 1.9933 -0.4019 3.7282 8 7 2.6765 -1.5189 3.8510 9 14 1.4997 0.5631 5.2496 10 1 0.0198 0.6697 5.3096 11 1 1.9947 -0.1371 6.4621 12 1 2.0918 1.9235 5.1866 13 6 2.0399 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.2284 -0.5588 -3.6578 16 1 2.2307 -1.6446 -3.5629 17 6 3.6636 -0.0598 -3.8380 18 7 3.6666 1.4076 -3.9073 19 6 3.1354 2.0008 -2.6534 20 6 3.6887 3.4477 -2.6835 21 6 5.1009 3.2653 -3.2853 22 6 5.0436 1.9287 -4.0480 23 6 1.4042 -0.1608 -4.8549 24 6 0.9702 1.1445 -4.9922 25 6 0.2178 1.5106 -6.0925 26 6 -0.1084 0.5693 -7.0510 27 6 0.3211 -0.7371 -6.9109 28 6 1.0772 -1.1022 -5.8129 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7199 1.2950 33 1 3.1264 -0.7996 1.2055 34 1 2.9238 -1.8419 4.7316 35 1 3.1263 -0.7994 -1.2057 36 1 1.6053 -1.7198 -1.2952 37 1 0.6474 0.1068 -2.5196 38 1 4.2701 -0.3849 -2.9927 39 1 4.0770 -0.4678 -4.7603 40 1 2.0454 2.0055 -2.6618 41 1 3.5121 1.4628 -1.7836 42 1 3.7489 3.8586 -1.6758 43 1 3.0755 4.0819 -3.3238 44 1 5.8469 3.2164 -2.4920 45 1 5.3288 4.0822 -3.9700 46 1 5.7534 1.2236 -3.6155 47 1 5.2742 2.0886 -5.1013 48 1 1.2215 1.8790 -4.2413 49 1 -0.1176 2.5314 -6.2021 50 1 -0.6986 0.8548 -7.9092 51 1 0.0666 -1.4724 -7.6599 52 1 1.4124 -2.1230 -5.7033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602510049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:16 Heat of formation + Delta-G solvation = 26.334515 kcal Electronic energy + Delta-G solvation = -27599.114409 eV Core-core repulsion = 24176.888395 eV Total energy + Delta-G solvation = -3422.226013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.96940 -38.37948 -36.79423 -34.68683 -32.51978 -31.25707 -30.90722 -30.47794 -28.52293 -27.34557 -26.61801 -25.35247 -23.21066 -22.62110 -21.93249 -21.10823 -20.63084 -19.85699 -18.99469 -17.08640 -16.34008 -16.01368 -15.86552 -15.52786 -14.89340 -14.76525 -14.48302 -14.12466 -13.92742 -13.64578 -13.40695 -13.30833 -12.94806 -12.58304 -12.55591 -12.47265 -12.17504 -12.09665 -11.78955 -11.47886 -11.29298 -11.25203 -11.19043 -10.93405 -10.87847 -10.82431 -10.73020 -10.49645 -10.36571 -10.31071 -10.19715 -9.72307 -9.16471 -8.99722 -8.83979 -8.62979 -8.33369 -8.21148 -7.89970 -5.98273 -3.99500 1.39800 1.51417 3.33768 3.38339 3.40671 3.85154 4.17809 4.38613 4.49637 4.72753 4.83819 4.90695 4.96582 5.02823 5.09153 5.20343 5.31684 5.37559 5.45723 5.53374 5.57887 5.66517 5.69881 5.71027 5.73639 5.79218 5.83573 5.89048 5.98493 6.02904 6.05733 6.11176 6.15284 6.22749 6.26229 6.43235 6.47266 6.50016 6.54296 6.57138 6.69756 6.75425 6.95475 7.07735 7.10970 7.15733 7.18679 7.24854 7.39653 7.60067 7.68496 7.84746 8.01814 8.45497 9.06775 9.64002 11.13182 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.003431 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.676542 B = 8158.131934 C = 9170.833881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 H 0.065 0.935 4 C 0.029 3.971 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.061 3.939 14 N -0.676 5.676 15 C 0.126 3.874 16 H 0.052 0.948 17 C 0.063 3.937 18 N -0.506 5.506 19 C 0.055 3.945 20 C -0.136 4.136 21 C -0.129 4.129 22 C 0.034 3.966 23 C -0.076 4.076 24 C -0.072 4.072 25 C -0.129 4.129 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.118 4.118 29 H 0.033 0.967 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.013 0.987 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.025 0.975 37 H 0.341 0.659 38 H 0.038 0.962 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.037 0.963 47 H 0.069 0.931 48 H 0.138 0.862 49 H 0.116 0.884 50 H 0.114 0.886 51 H 0.115 0.885 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.581 4.922 -21.390 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.099 4.099 3 H 0.084 0.916 4 C -0.008 4.008 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.067 4.067 14 N -0.307 5.307 15 C 0.016 3.984 16 H 0.070 0.930 17 C -0.066 4.066 18 N -0.230 5.230 19 C -0.072 4.072 20 C -0.175 4.175 21 C -0.167 4.167 22 C -0.094 4.094 23 C -0.076 4.076 24 C -0.090 4.090 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.148 4.148 28 C -0.137 4.137 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.161 0.839 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.088 0.912 48 H 0.156 0.844 49 H 0.135 0.865 50 H 0.132 0.868 51 H 0.133 0.867 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.315 5.372 -21.625 22.285 hybrid contribution -0.088 -0.758 1.453 1.642 sum -0.403 4.614 -20.172 20.697 Atomic orbital electron populations 1.21725 0.96633 1.00394 1.00288 1.21188 0.94873 0.99947 0.93883 0.91639 1.19093 0.95945 0.95356 0.90451 1.21191 1.34665 1.08251 0.90976 0.92620 1.25015 0.95326 0.95077 0.99082 1.69956 1.39045 1.21238 1.23471 0.86704 0.78883 0.80153 0.82535 1.20295 1.21407 1.20271 1.22227 1.00127 0.94562 0.89807 1.61198 1.15947 1.52369 1.01227 1.20473 0.93496 0.96256 0.88159 0.92988 1.22202 0.95100 0.89285 1.00004 1.64791 1.16824 1.05538 1.35861 1.23547 1.02241 0.91191 0.90192 1.22682 0.95550 0.98816 1.00441 1.22351 0.98113 0.97008 0.99277 1.22830 0.90745 0.95697 1.00103 1.19755 0.97873 0.94081 0.95920 1.21235 0.94519 0.95870 0.97408 1.21183 0.99373 0.99208 0.94990 1.21090 1.00477 0.93629 0.99119 1.20988 0.99396 0.96324 0.98066 1.21020 0.98999 0.98966 0.94700 0.94847 0.91982 0.94151 0.96871 0.96902 0.93060 0.91754 0.95713 0.83911 0.94418 0.91222 0.87255 0.93184 0.91452 0.91619 0.91952 0.91807 0.94453 0.91238 0.84435 0.86544 0.86806 0.86707 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.77 37.16 0.33 -2.06 16 2 C -0.08 -1.54 2.55 -90.62 -0.23 -1.77 16 3 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.11 8.41 -34.44 -0.29 -14.40 16 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.06 0.99 4.26 -3.82 -0.02 0.97 16 14 N -0.68 -8.88 1.98 -107.95 -0.21 -9.09 16 15 C 0.13 1.53 2.59 -68.86 -0.18 1.35 16 16 H 0.05 0.64 7.71 -51.93 -0.40 0.24 16 17 C 0.06 0.78 4.64 -3.82 -0.02 0.76 16 18 N -0.51 -6.16 3.97 -230.44 -0.91 -7.07 16 19 C 0.06 0.72 4.22 -1.90 -0.01 0.71 16 20 C -0.14 -1.61 7.06 -24.87 -0.18 -1.78 16 21 C -0.13 -1.41 6.93 -25.37 -0.18 -1.58 16 22 C 0.03 0.39 6.70 -2.75 -0.02 0.37 16 23 C -0.08 -0.89 4.65 -104.62 -0.49 -1.37 16 24 C -0.07 -0.84 8.19 -39.58 -0.32 -1.17 16 25 C -0.13 -1.38 10.05 -39.58 -0.40 -1.78 16 26 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 27 C -0.13 -1.32 10.05 -39.59 -0.40 -1.72 16 28 C -0.12 -1.29 9.67 -39.58 -0.38 -1.68 16 29 H 0.03 0.50 6.80 -51.93 -0.35 0.15 16 30 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.06 1.10 7.19 -51.92 -0.37 0.72 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.34 4.48 6.60 -39.29 -0.26 4.22 16 38 H 0.04 0.51 7.19 -51.93 -0.37 0.13 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.11 1.46 4.55 -51.92 -0.24 1.23 16 41 H 0.05 0.78 7.12 -51.93 -0.37 0.41 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.04 0.43 7.71 -51.93 -0.40 0.03 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.14 1.66 5.03 -52.49 -0.26 1.40 16 49 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 50 H 0.11 0.91 8.06 -52.49 -0.42 0.49 16 51 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 52 H 0.11 1.11 8.01 -52.49 -0.42 0.69 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -28.61 392.72 -12.12 -40.73 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -9.24 Total: 3.79 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -3.39 Total: -24.72 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.39 Total: -42.27 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.61 -12.12 -40.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.063 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds