Wall clock time and date at job start Tue Mar 31 2020 11:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47144 * 2 1 4 4 C 1.53002 * 109.47403 * 120.00394 * 2 1 3 5 5 C 1.50698 * 109.46758 * 295.00209 * 4 2 1 6 6 H 1.08000 * 120.00099 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00009 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99949 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00444 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46933 * 59.99571 * 9 7 5 11 11 H 1.48499 * 109.47265 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47014 * 299.99924 * 9 7 5 13 13 C 1.53002 * 109.46853 * 240.00322 * 2 1 3 14 14 N 1.46898 * 109.47169 * 65.00090 * 13 2 1 15 15 C 1.46898 * 111.00183 * 174.81784 * 14 13 2 16 16 H 1.09004 * 109.47427 * 36.72589 * 15 14 13 17 17 C 1.53008 * 109.47089 * 276.73455 * 15 14 13 18 18 N 1.46903 * 109.46413 * 302.43974 * 17 15 14 19 19 C 1.48530 * 111.00032 * 61.20065 * 18 17 15 20 20 C 1.54934 * 103.22996 * 159.71682 * 19 18 17 21 21 C 1.54593 * 102.92062 * 322.58294 * 20 19 18 22 22 C 1.47907 * 110.99272 * 178.58921 * 18 17 15 23 23 C 1.50693 * 109.47629 * 156.73308 * 15 14 13 24 24 C 1.38241 * 120.00008 * 43.59029 * 23 15 14 25 25 C 1.38229 * 119.99947 * 179.79114 * 24 23 15 26 26 C 1.38237 * 120.00209 * 0.44113 * 25 24 23 27 27 C 1.38234 * 119.99707 * 359.81591 * 26 25 24 28 28 C 1.38227 * 120.00378 * 359.97238 * 27 26 25 29 29 H 1.08996 * 109.47534 * 59.99867 * 1 2 3 30 30 H 1.08997 * 109.46879 * 299.99421 * 1 2 3 31 31 H 1.09005 * 109.47100 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46718 * 54.99702 * 4 2 1 33 33 H 1.08998 * 109.47147 * 174.99738 * 4 2 1 34 34 H 0.97003 * 120.00245 * 180.02562 * 8 7 5 35 35 H 1.09008 * 109.47105 * 184.99756 * 13 2 1 36 36 H 1.09000 * 109.47020 * 304.99587 * 13 2 1 37 37 H 1.00900 * 110.99937 * 298.76471 * 14 13 2 38 38 H 1.08999 * 109.46761 * 62.43827 * 17 15 14 39 39 H 1.08998 * 109.47102 * 182.44527 * 17 15 14 40 40 H 1.09009 * 110.66172 * 278.14727 * 19 18 17 41 41 H 1.08994 * 110.67203 * 41.27491 * 19 18 17 42 42 H 1.08994 * 110.72693 * 204.22498 * 20 19 18 43 43 H 1.09007 * 110.72545 * 80.93915 * 20 19 18 44 44 H 1.09001 * 110.31309 * 263.04109 * 21 20 19 45 45 H 1.09001 * 110.31204 * 140.87209 * 21 20 19 46 46 H 1.08996 * 109.91851 * 333.51039 * 22 18 17 47 47 H 1.09004 * 109.91248 * 94.61096 * 22 18 17 48 48 H 1.08001 * 119.99865 * 359.97438 * 24 23 15 49 49 H 1.08007 * 120.00195 * 180.27212 * 25 24 23 50 50 H 1.08001 * 119.99915 * 179.83124 * 26 25 24 51 51 H 1.07999 * 119.99684 * 180.02562 * 27 26 25 52 52 H 1.08001 * 120.00340 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 0.0569 2.4765 6 1 1.0806 0.9744 2.3757 7 6 1.9933 -0.4019 3.7282 8 7 2.6765 -1.5189 3.8510 9 14 1.4997 0.5631 5.2496 10 1 0.0198 0.6697 5.3096 11 1 1.9947 -0.1371 6.4621 12 1 2.0918 1.9235 5.1866 13 6 2.0399 -0.7212 -1.2493 14 7 1.6513 0.0375 -2.4456 15 6 2.2284 -0.5588 -3.6578 16 1 2.2307 -1.6446 -3.5629 17 6 3.6636 -0.0598 -3.8380 18 7 3.6666 1.4076 -3.9073 19 6 3.1354 2.0008 -2.6534 20 6 3.6887 3.4477 -2.6835 21 6 5.1009 3.2653 -3.2853 22 6 5.0436 1.9287 -4.0480 23 6 1.4042 -0.1608 -4.8549 24 6 0.9702 1.1445 -4.9922 25 6 0.2178 1.5106 -6.0925 26 6 -0.1084 0.5693 -7.0510 27 6 0.3211 -0.7371 -6.9109 28 6 1.0772 -1.1022 -5.8129 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -1.7199 1.2950 33 1 3.1264 -0.7996 1.2055 34 1 2.9238 -1.8419 4.7316 35 1 3.1263 -0.7994 -1.2057 36 1 1.6053 -1.7198 -1.2952 37 1 0.6474 0.1068 -2.5196 38 1 4.2701 -0.3849 -2.9927 39 1 4.0770 -0.4678 -4.7603 40 1 2.0454 2.0055 -2.6618 41 1 3.5121 1.4628 -1.7836 42 1 3.7489 3.8586 -1.6758 43 1 3.0755 4.0819 -3.3238 44 1 5.8469 3.2164 -2.4920 45 1 5.3288 4.0822 -3.9700 46 1 5.7534 1.2236 -3.6155 47 1 5.2742 2.0886 -5.1013 48 1 1.2215 1.8790 -4.2413 49 1 -0.1176 2.5314 -6.2021 50 1 -0.6986 0.8548 -7.9092 51 1 0.0666 -1.4724 -7.6599 52 1 1.4124 -2.1230 -5.7033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602510049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:15 Heat of formation + Delta-G solvation = 13.334720 kcal Electronic energy + Delta-G solvation = -27599.678122 eV Core-core repulsion = 24176.888395 eV Total energy + Delta-G solvation = -3422.789727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.92464 -39.27151 -38.13226 -36.09946 -34.38420 -32.45433 -31.76472 -31.47508 -29.50538 -28.93076 -27.96190 -26.81214 -24.72520 -23.61303 -23.06110 -22.10378 -21.55922 -20.91839 -20.53319 -18.55368 -17.91001 -17.05673 -16.82721 -16.58914 -16.49545 -15.89006 -15.72272 -15.14407 -15.10975 -14.91220 -14.59945 -14.41170 -14.08732 -14.06597 -13.69198 -13.55241 -13.42330 -13.25624 -13.24920 -12.87199 -12.76230 -12.61670 -12.34928 -12.25876 -12.21136 -12.10253 -11.96491 -11.80561 -11.68904 -11.45579 -11.43484 -11.28323 -11.04540 -10.89320 -10.52590 -9.64852 -9.47694 -9.27029 -9.00904 -8.17068 -6.25971 0.58174 0.70769 1.40017 1.42512 1.50045 2.42043 3.00269 3.16560 3.17278 3.30520 3.79347 3.89696 3.96411 4.13846 4.18133 4.22484 4.25467 4.30435 4.39384 4.45002 4.48904 4.56160 4.59440 4.65915 4.71763 4.78135 4.80203 4.82662 4.88303 4.93864 4.95451 5.06222 5.06373 5.14557 5.22825 5.25757 5.31436 5.34209 5.41652 5.45782 5.50461 5.55738 5.62663 5.71280 5.78950 5.83179 5.85544 5.91361 6.09167 6.16504 6.26484 6.30809 6.36130 6.48364 6.90299 7.42381 8.94805 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.003431 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.676542 B = 8158.131934 C = 9170.833881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.068 4.068 3 H 0.060 0.940 4 C 0.035 3.965 5 C -0.526 4.526 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.079 3.921 14 N -0.664 5.664 15 C 0.131 3.869 16 H 0.051 0.949 17 C 0.066 3.934 18 N -0.501 5.501 19 C 0.060 3.940 20 C -0.135 4.135 21 C -0.126 4.126 22 C 0.032 3.968 23 C -0.085 4.085 24 C -0.082 4.082 25 C -0.136 4.136 26 C -0.127 4.127 27 C -0.133 4.133 28 C -0.128 4.128 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.036 0.964 32 H -0.014 1.014 33 H -0.018 1.018 34 H 0.261 0.739 35 H 0.050 0.950 36 H 0.021 0.979 37 H 0.345 0.655 38 H 0.020 0.980 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.019 0.981 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.031 0.969 47 H 0.081 0.919 48 H 0.131 0.869 49 H 0.131 0.869 50 H 0.136 0.864 51 H 0.135 0.865 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.782 6.330 -23.169 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.087 4.087 3 H 0.078 0.922 4 C -0.003 4.003 5 C -0.564 4.564 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.050 4.050 14 N -0.296 5.296 15 C 0.021 3.979 16 H 0.069 0.931 17 C -0.063 4.063 18 N -0.225 5.225 19 C -0.067 4.067 20 C -0.173 4.173 21 C -0.164 4.164 22 C -0.096 4.096 23 C -0.086 4.086 24 C -0.100 4.100 25 C -0.154 4.154 26 C -0.145 4.145 27 C -0.151 4.151 28 C -0.146 4.146 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.005 0.995 33 H 0.000 1.000 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.165 0.835 38 H 0.038 0.962 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.049 0.951 47 H 0.099 0.901 48 H 0.148 0.852 49 H 0.149 0.851 50 H 0.154 0.846 51 H 0.153 0.847 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.524 6.793 -23.424 24.437 hybrid contribution 0.301 -1.218 1.926 2.298 sum -1.223 5.575 -21.499 22.243 Atomic orbital electron populations 1.21627 0.95070 1.00434 1.01073 1.20944 0.96004 0.98964 0.92746 0.92199 1.18979 0.93880 0.94479 0.92916 1.21611 1.34307 1.08521 0.92007 0.91998 1.25940 0.95300 0.96067 1.02633 1.70100 1.40392 1.23020 1.24255 0.85595 0.78984 0.78810 0.78251 1.19143 1.21195 1.19258 1.21855 0.99083 0.94149 0.89897 1.61107 1.16185 1.51683 1.00662 1.20424 0.93501 0.96067 0.87884 0.93099 1.22181 0.95019 0.89482 0.99665 1.64817 1.17360 1.05336 1.35006 1.23402 1.02044 0.91860 0.89390 1.22668 0.96247 0.97913 1.00518 1.22345 0.97413 0.97248 0.99411 1.22899 0.90085 0.95801 1.00827 1.19669 0.98510 0.94526 0.95875 1.21225 0.95250 0.95651 0.97879 1.21412 0.99050 1.00239 0.94711 1.21406 1.00125 0.93428 0.99535 1.21283 0.98744 0.97003 0.98107 1.21203 0.99226 0.99307 0.94876 0.91405 0.93756 0.94457 0.99532 0.99967 0.93029 0.93101 0.96113 0.83464 0.96221 0.90286 0.87448 0.96212 0.91972 0.90554 0.92313 0.90112 0.95106 0.90078 0.85164 0.85061 0.84599 0.84691 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 8.77 71.98 0.63 -3.79 16 2 C -0.07 -2.67 2.55 -10.79 -0.03 -2.70 16 3 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.04 1.83 4.45 29.85 0.13 1.96 16 5 C -0.53 -29.61 8.41 25.60 0.22 -29.39 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 9 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 C 0.08 2.63 4.26 86.30 0.37 2.99 16 14 N -0.66 -17.33 1.98 -495.44 -0.98 -18.30 16 15 C 0.13 3.11 2.59 44.17 0.11 3.23 16 16 H 0.05 1.24 7.71 -2.39 -0.02 1.22 16 17 C 0.07 1.61 4.64 86.31 0.40 2.01 16 18 N -0.50 -11.91 3.97 -882.98 -3.50 -15.42 16 19 C 0.06 1.57 4.22 86.65 0.37 1.94 16 20 C -0.14 -3.07 7.06 31.80 0.22 -2.85 16 21 C -0.13 -2.61 6.93 31.47 0.22 -2.39 16 22 C 0.03 0.70 6.70 86.45 0.58 1.28 16 23 C -0.09 -1.88 4.65 -19.87 -0.09 -1.97 16 24 C -0.08 -1.77 8.19 22.27 0.18 -1.59 16 25 C -0.14 -2.58 10.05 22.27 0.22 -2.35 16 26 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 27 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 28 C -0.13 -2.56 9.67 22.27 0.22 -2.34 16 29 H 0.07 1.93 6.80 -2.39 -0.02 1.91 16 30 H 0.04 1.72 6.95 -2.39 -0.02 1.70 16 31 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 32 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 34 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 35 H 0.05 1.83 7.19 -2.38 -0.02 1.81 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.35 8.67 6.60 -89.69 -0.59 8.08 16 38 H 0.02 0.55 7.19 -2.39 -0.02 0.53 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.11 2.82 4.55 -2.38 -0.01 2.81 16 41 H 0.02 0.63 7.12 -2.39 -0.02 0.61 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 46 H 0.03 0.71 7.71 -2.39 -0.02 0.69 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.13 2.97 5.03 -2.91 -0.01 2.96 16 49 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 50 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 51 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 52 H 0.12 2.18 8.01 -2.91 -0.02 2.15 16 Total: -1.00 -62.62 392.72 2.77 -59.85 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.28 Total: 24.35 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 4.66 Total: -39.74 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -4.20 Total: -91.01 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -62.62 2.77 -59.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.183 kcal (2) G-P(sol) polarization free energy of solvation -62.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds