Wall clock time and date at job start Tue Mar 31 2020 11:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47886 * 2 1 4 4 C 1.53002 * 109.46436 * 240.00151 * 2 1 3 5 5 C 1.50700 * 109.47312 * 65.00330 * 4 2 1 6 6 H 1.08003 * 119.99812 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99941 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99876 * 359.72735 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46986 * 179.72790 * 9 7 5 11 11 H 1.48504 * 109.47040 * 299.72695 * 9 7 5 12 12 H 1.48494 * 109.47180 * 59.72282 * 9 7 5 13 13 C 1.53000 * 109.47035 * 120.00854 * 2 1 3 14 14 N 1.46905 * 109.46782 * 294.99299 * 13 2 1 15 15 C 1.46900 * 111.00081 * 183.16260 * 14 13 2 16 16 H 1.09006 * 109.46945 * 33.31484 * 15 14 13 17 17 C 1.53001 * 109.47191 * 273.31683 * 15 14 13 18 18 N 1.46905 * 109.46837 * 303.55448 * 17 15 14 19 19 C 1.48528 * 111.00171 * 60.28939 * 18 17 15 20 20 C 1.54938 * 103.23019 * 159.71980 * 19 18 17 21 21 C 1.54598 * 102.91591 * 322.58811 * 20 19 18 22 22 C 1.47902 * 110.99873 * 177.68786 * 18 17 15 23 23 C 1.50695 * 109.46971 * 153.31466 * 15 14 13 24 24 C 1.38236 * 120.00480 * 37.07865 * 23 15 14 25 25 C 1.38230 * 120.00173 * 179.78689 * 24 23 15 26 26 C 1.38233 * 120.00278 * 0.43947 * 25 24 23 27 27 C 1.38236 * 119.99535 * 359.81153 * 26 25 24 28 28 C 1.38229 * 120.00617 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46542 * 300.00101 * 1 2 3 30 30 H 1.08999 * 109.47019 * 59.99124 * 1 2 3 31 31 H 1.08997 * 109.47563 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47630 * 304.99995 * 4 2 1 33 33 H 1.09003 * 109.46628 * 185.00592 * 4 2 1 34 34 H 0.96997 * 120.00538 * 0.27071 * 8 7 5 35 35 H 1.08998 * 109.47715 * 54.99299 * 13 2 1 36 36 H 1.09000 * 109.46807 * 175.00099 * 13 2 1 37 37 H 1.00901 * 110.99683 * 307.11409 * 14 13 2 38 38 H 1.08993 * 109.46931 * 63.55146 * 17 15 14 39 39 H 1.09001 * 109.47246 * 183.55699 * 17 15 14 40 40 H 1.09001 * 110.67313 * 278.15711 * 19 18 17 41 41 H 1.09007 * 110.66732 * 41.28340 * 19 18 17 42 42 H 1.08991 * 110.72795 * 204.23147 * 20 19 18 43 43 H 1.08996 * 110.72333 * 80.94101 * 20 19 18 44 44 H 1.08998 * 110.30677 * 263.03492 * 21 20 19 45 45 H 1.09000 * 110.30456 * 140.87331 * 21 20 19 46 46 H 1.08998 * 109.91583 * 333.50859 * 22 18 17 47 47 H 1.09003 * 109.91439 * 94.60354 * 22 18 17 48 48 H 1.08001 * 119.99492 * 359.97438 * 24 23 15 49 49 H 1.08008 * 119.99922 * 180.26928 * 25 24 23 50 50 H 1.08002 * 120.00378 * 179.83648 * 26 25 24 51 51 H 1.08006 * 119.99428 * 179.97438 * 27 26 25 52 52 H 1.07995 * 120.00832 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9930 -0.4017 -3.7284 8 7 2.6811 -1.5157 -3.8509 9 14 1.4994 0.5636 -5.2496 10 1 2.0004 -0.1328 -6.4618 11 1 0.0192 0.6647 -5.3130 12 1 2.0862 1.9260 -5.1833 13 6 2.0400 -0.7214 1.2491 14 7 1.6515 0.0372 2.4456 15 6 2.1890 -0.5866 3.6621 16 1 3.1536 -1.0433 3.4404 17 6 1.2178 -1.6605 4.1565 18 7 -0.1056 -1.0610 4.3741 19 6 -0.6425 -0.4847 3.1149 20 6 -2.1655 -0.3971 3.3862 21 6 -2.4462 -1.6820 4.1988 22 6 -1.0865 -2.0826 4.8005 23 6 2.3635 0.4627 4.7296 24 6 1.4403 1.4842 4.8523 25 6 1.5981 2.4442 5.8343 26 6 2.6839 2.3878 6.6879 27 6 3.6099 1.3692 6.5619 28 6 3.4499 0.4067 5.5828 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6052 -1.7198 -1.2953 33 1 3.1262 -0.7996 -1.2057 34 1 2.9378 -2.0167 -3.0610 35 1 1.6054 -1.7200 1.2951 36 1 3.1263 -0.7996 1.2054 37 1 1.9437 1.0003 2.3737 38 1 1.1402 -2.4513 3.4104 39 1 1.5854 -2.0794 5.0932 40 1 -0.2258 0.5067 2.9371 41 1 -0.4392 -1.1454 2.2720 42 1 -2.7248 -0.4025 2.4507 43 1 -2.4023 0.4900 3.9734 44 1 -2.8171 -2.4704 3.5438 45 1 -3.1656 -1.4783 4.9919 46 1 -0.7889 -3.0621 4.4263 47 1 -1.1505 -2.1046 5.8884 48 1 0.5942 1.5306 4.1827 49 1 0.8744 3.2399 5.9329 50 1 2.8086 3.1394 7.4535 51 1 4.4585 1.3254 7.2286 52 1 4.1735 -0.3889 5.4840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602510055.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:18 Heat of formation + Delta-G solvation = 24.026735 kcal Electronic energy + Delta-G solvation = -27685.401281 eV Core-core repulsion = 24263.075195 eV Total energy + Delta-G solvation = -3422.326086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.04068 -38.46254 -36.83309 -34.88164 -32.71087 -31.30955 -30.95369 -30.47698 -28.67994 -27.27552 -26.37488 -25.19831 -23.18384 -22.69291 -22.01916 -21.20349 -20.69752 -19.90185 -19.40862 -17.09141 -16.73158 -16.01692 -15.88316 -15.58846 -14.93317 -14.74438 -14.27772 -14.11061 -13.90810 -13.76109 -13.50176 -13.33970 -13.22661 -12.75052 -12.69712 -12.48644 -12.28575 -11.94392 -11.76261 -11.48660 -11.36463 -11.32449 -11.23290 -11.01138 -10.96203 -10.86182 -10.69187 -10.54181 -10.41758 -10.18156 -10.07990 -9.82482 -9.45280 -8.88073 -8.69247 -8.47111 -8.30438 -8.26445 -7.96595 -6.32841 -4.01072 1.36079 1.46286 3.44784 3.46544 3.65100 3.81042 4.10814 4.31658 4.57115 4.66032 4.76859 4.84319 4.92512 4.98886 5.02383 5.14720 5.24997 5.40249 5.43414 5.47488 5.51624 5.55428 5.62042 5.64902 5.66247 5.71305 5.78181 5.82636 5.91048 5.97859 5.99952 6.05416 6.08836 6.16706 6.26632 6.36572 6.41298 6.46331 6.50432 6.53294 6.63368 6.69350 6.86310 7.01296 7.02528 7.09586 7.15215 7.15816 7.31943 7.39630 7.50604 7.58837 8.25996 8.49826 8.91981 9.70392 11.07514 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.003425 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.934190 B = 8173.301598 C = 9269.785321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.015 3.985 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.916 5.916 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.060 3.940 14 N -0.674 5.674 15 C 0.125 3.875 16 H 0.055 0.945 17 C 0.065 3.935 18 N -0.506 5.506 19 C 0.056 3.944 20 C -0.138 4.138 21 C -0.129 4.129 22 C 0.035 3.965 23 C -0.074 4.074 24 C -0.078 4.078 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.127 4.127 28 C -0.118 4.118 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.005 0.995 33 H 0.002 0.998 34 H 0.267 0.733 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.342 0.658 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.036 0.964 47 H 0.070 0.930 48 H 0.134 0.866 49 H 0.117 0.883 50 H 0.115 0.885 51 H 0.116 0.884 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 3.185 22.246 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.074 0.926 4 C -0.022 4.022 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.068 4.068 14 N -0.305 5.305 15 C 0.015 3.985 16 H 0.073 0.927 17 C -0.064 4.064 18 N -0.230 5.230 19 C -0.071 4.071 20 C -0.176 4.176 21 C -0.167 4.167 22 C -0.094 4.094 23 C -0.074 4.074 24 C -0.096 4.096 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.145 4.145 28 C -0.137 4.137 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.024 0.976 33 H 0.020 0.980 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.161 0.839 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.088 0.912 48 H 0.152 0.848 49 H 0.135 0.865 50 H 0.133 0.867 51 H 0.134 0.866 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.610 3.271 21.031 21.778 hybrid contribution 0.855 -0.650 1.100 1.537 sum -3.755 2.621 22.131 22.600 Atomic orbital electron populations 1.21714 0.95500 1.00411 1.00601 1.21054 0.96113 0.98825 0.93352 0.92639 1.19230 0.95064 0.95534 0.92384 1.22022 1.38638 1.10236 0.92244 0.93214 1.25815 0.94713 0.97149 1.01387 1.70781 1.35924 1.15076 1.33470 0.83578 0.76060 0.75163 0.75698 1.20874 1.21475 1.21512 1.22264 0.97191 0.97748 0.89641 1.61254 1.61717 1.06317 1.01202 1.20507 0.95829 0.93221 0.88909 0.92728 1.22186 0.90430 0.94592 0.99181 1.64771 1.00728 1.27847 1.29698 1.23696 0.90751 1.02587 0.90077 1.22703 0.98235 0.97235 0.99459 1.22347 0.96765 0.98231 0.99395 1.22831 0.92266 0.94044 1.00228 1.19763 0.94754 0.95921 0.96984 1.21138 0.98157 0.92828 0.97480 1.21166 0.97923 0.99247 0.96107 1.21092 0.95212 0.98531 0.99516 1.21003 0.99391 0.95423 0.98708 1.20994 0.97631 0.99057 0.96011 0.93252 0.92720 0.94406 0.97642 0.97977 0.92223 0.91814 0.95692 0.83939 0.94657 0.91185 0.87261 0.92949 0.91538 0.91581 0.92028 0.91756 0.94540 0.91209 0.84811 0.86472 0.86719 0.86632 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 7.84 37.16 0.29 -2.00 16 2 C -0.07 -1.45 2.45 -90.62 -0.22 -1.67 16 3 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 4 C 0.02 0.38 3.76 -27.88 -0.10 0.28 16 5 C -0.59 -16.61 8.41 -34.44 -0.29 -16.90 16 6 H 0.05 1.37 7.06 -52.48 -0.37 1.00 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 8 N -0.92 -28.20 13.65 55.43 0.76 -27.44 16 9 Si 1.07 25.40 29.90 -169.99 -5.08 20.31 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.06 0.96 4.41 -3.82 -0.02 0.95 16 14 N -0.67 -8.73 1.33 -107.95 -0.14 -8.88 16 15 C 0.13 1.50 2.59 -68.87 -0.18 1.32 16 16 H 0.05 0.67 7.61 -51.93 -0.40 0.28 16 17 C 0.07 0.78 4.71 -3.82 -0.02 0.76 16 18 N -0.51 -6.00 4.33 -230.45 -1.00 -7.00 16 19 C 0.06 0.69 3.10 -1.90 -0.01 0.69 16 20 C -0.14 -1.55 7.06 -24.87 -0.18 -1.73 16 21 C -0.13 -1.34 6.93 -25.38 -0.18 -1.52 16 22 C 0.03 0.38 6.70 -2.76 -0.02 0.36 16 23 C -0.07 -0.85 4.66 -104.62 -0.49 -1.34 16 24 C -0.08 -0.89 8.12 -39.59 -0.32 -1.22 16 25 C -0.13 -1.33 10.05 -39.59 -0.40 -1.73 16 26 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 27 C -0.13 -1.29 10.05 -39.59 -0.40 -1.69 16 28 C -0.12 -1.29 9.67 -39.58 -0.38 -1.67 16 29 H 0.05 0.77 5.49 -51.93 -0.29 0.48 16 30 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 31 H 0.04 0.70 7.95 -51.93 -0.41 0.29 16 32 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 33 H 0.00 0.05 8.00 -51.93 -0.42 -0.36 16 34 H 0.27 8.21 7.22 -40.82 -0.29 7.91 16 35 H 0.06 1.07 7.56 -51.93 -0.39 0.67 16 36 H 0.02 0.42 7.98 -51.93 -0.41 0.00 16 37 H 0.34 4.47 7.76 -39.29 -0.30 4.17 16 38 H 0.04 0.46 7.57 -51.93 -0.39 0.07 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.11 1.40 3.72 -51.93 -0.19 1.21 16 41 H 0.05 0.76 5.76 -51.93 -0.30 0.46 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.04 0.41 7.70 -51.93 -0.40 0.01 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.13 1.57 5.33 -52.49 -0.28 1.29 16 49 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 50 H 0.11 0.91 8.06 -52.49 -0.42 0.49 16 51 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 52 H 0.12 1.11 8.05 -52.49 -0.42 0.68 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -29.60 387.43 -12.10 -41.70 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -9.07 Total: 3.95 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -3.40 Total: -28.49 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.39 Total: -43.32 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.60 -12.10 -41.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510055.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.728 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds