Wall clock time and date at job start Tue Mar 31 2020 11:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47886 * 2 1 4 4 C 1.53002 * 109.46436 * 240.00151 * 2 1 3 5 5 C 1.50700 * 109.47312 * 65.00330 * 4 2 1 6 6 H 1.08003 * 119.99812 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99941 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99876 * 359.72735 * 7 5 4 9 9 Si 1.86800 * 119.99814 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46986 * 179.72790 * 9 7 5 11 11 H 1.48504 * 109.47040 * 299.72695 * 9 7 5 12 12 H 1.48494 * 109.47180 * 59.72282 * 9 7 5 13 13 C 1.53000 * 109.47035 * 120.00854 * 2 1 3 14 14 N 1.46905 * 109.46782 * 294.99299 * 13 2 1 15 15 C 1.46900 * 111.00081 * 183.16260 * 14 13 2 16 16 H 1.09006 * 109.46945 * 33.31484 * 15 14 13 17 17 C 1.53001 * 109.47191 * 273.31683 * 15 14 13 18 18 N 1.46905 * 109.46837 * 303.55448 * 17 15 14 19 19 C 1.48528 * 111.00171 * 60.28939 * 18 17 15 20 20 C 1.54938 * 103.23019 * 159.71980 * 19 18 17 21 21 C 1.54598 * 102.91591 * 322.58811 * 20 19 18 22 22 C 1.47902 * 110.99873 * 177.68786 * 18 17 15 23 23 C 1.50695 * 109.46971 * 153.31466 * 15 14 13 24 24 C 1.38236 * 120.00480 * 37.07865 * 23 15 14 25 25 C 1.38230 * 120.00173 * 179.78689 * 24 23 15 26 26 C 1.38233 * 120.00278 * 0.43947 * 25 24 23 27 27 C 1.38236 * 119.99535 * 359.81153 * 26 25 24 28 28 C 1.38229 * 120.00617 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46542 * 300.00101 * 1 2 3 30 30 H 1.08999 * 109.47019 * 59.99124 * 1 2 3 31 31 H 1.08997 * 109.47563 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47630 * 304.99995 * 4 2 1 33 33 H 1.09003 * 109.46628 * 185.00592 * 4 2 1 34 34 H 0.96997 * 120.00538 * 0.27071 * 8 7 5 35 35 H 1.08998 * 109.47715 * 54.99299 * 13 2 1 36 36 H 1.09000 * 109.46807 * 175.00099 * 13 2 1 37 37 H 1.00901 * 110.99683 * 307.11409 * 14 13 2 38 38 H 1.08993 * 109.46931 * 63.55146 * 17 15 14 39 39 H 1.09001 * 109.47246 * 183.55699 * 17 15 14 40 40 H 1.09001 * 110.67313 * 278.15711 * 19 18 17 41 41 H 1.09007 * 110.66732 * 41.28340 * 19 18 17 42 42 H 1.08991 * 110.72795 * 204.23147 * 20 19 18 43 43 H 1.08996 * 110.72333 * 80.94101 * 20 19 18 44 44 H 1.08998 * 110.30677 * 263.03492 * 21 20 19 45 45 H 1.09000 * 110.30456 * 140.87331 * 21 20 19 46 46 H 1.08998 * 109.91583 * 333.50859 * 22 18 17 47 47 H 1.09003 * 109.91439 * 94.60354 * 22 18 17 48 48 H 1.08001 * 119.99492 * 359.97438 * 24 23 15 49 49 H 1.08008 * 119.99922 * 180.26928 * 25 24 23 50 50 H 1.08002 * 120.00378 * 179.83648 * 26 25 24 51 51 H 1.08006 * 119.99428 * 179.97438 * 27 26 25 52 52 H 1.07995 * 120.00832 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9930 -0.4017 -3.7284 8 7 2.6811 -1.5157 -3.8509 9 14 1.4994 0.5636 -5.2496 10 1 2.0004 -0.1328 -6.4618 11 1 0.0192 0.6647 -5.3130 12 1 2.0862 1.9260 -5.1833 13 6 2.0400 -0.7214 1.2491 14 7 1.6515 0.0372 2.4456 15 6 2.1890 -0.5866 3.6621 16 1 3.1536 -1.0433 3.4404 17 6 1.2178 -1.6605 4.1565 18 7 -0.1056 -1.0610 4.3741 19 6 -0.6425 -0.4847 3.1149 20 6 -2.1655 -0.3971 3.3862 21 6 -2.4462 -1.6820 4.1988 22 6 -1.0865 -2.0826 4.8005 23 6 2.3635 0.4627 4.7296 24 6 1.4403 1.4842 4.8523 25 6 1.5981 2.4442 5.8343 26 6 2.6839 2.3878 6.6879 27 6 3.6099 1.3692 6.5619 28 6 3.4499 0.4067 5.5828 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6052 -1.7198 -1.2953 33 1 3.1262 -0.7996 -1.2057 34 1 2.9378 -2.0167 -3.0610 35 1 1.6054 -1.7200 1.2951 36 1 3.1263 -0.7996 1.2054 37 1 1.9437 1.0003 2.3737 38 1 1.1402 -2.4513 3.4104 39 1 1.5854 -2.0794 5.0932 40 1 -0.2258 0.5067 2.9371 41 1 -0.4392 -1.1454 2.2720 42 1 -2.7248 -0.4025 2.4507 43 1 -2.4023 0.4900 3.9734 44 1 -2.8171 -2.4704 3.5438 45 1 -3.1656 -1.4783 4.9919 46 1 -0.7889 -3.0621 4.4263 47 1 -1.1505 -2.1046 5.8884 48 1 0.5942 1.5306 4.1827 49 1 0.8744 3.2399 5.9329 50 1 2.8086 3.1394 7.4535 51 1 4.4585 1.3254 7.2286 52 1 4.1735 -0.3889 5.4840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602510055.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:17 Heat of formation + Delta-G solvation = 9.936472 kcal Electronic energy + Delta-G solvation = -27686.012280 eV Core-core repulsion = 24263.075195 eV Total energy + Delta-G solvation = -3422.937086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98212 -39.33229 -38.18830 -36.31839 -34.53304 -32.46096 -31.79101 -31.49497 -29.63447 -28.59980 -27.96078 -26.64785 -24.80055 -23.69811 -23.11842 -22.18877 -21.57356 -20.99637 -20.86082 -18.85855 -18.00439 -17.02625 -16.83148 -16.52101 -16.02771 -15.87071 -15.65586 -15.51180 -15.31821 -15.02229 -14.83303 -14.38971 -14.16126 -14.03529 -13.77181 -13.61829 -13.34645 -13.32734 -13.22324 -12.94763 -12.74527 -12.55477 -12.40297 -12.23419 -12.13533 -12.01251 -11.94689 -11.79889 -11.68932 -11.57162 -11.39701 -11.27294 -11.25659 -10.56537 -10.52204 -9.68390 -9.50968 -9.30125 -9.04365 -8.65429 -6.34469 0.54791 0.65933 1.52063 1.60511 1.79214 2.57491 2.97223 3.10064 3.18637 3.25510 3.73408 3.87422 3.94968 4.05440 4.11233 4.17095 4.18784 4.26343 4.35462 4.39803 4.40175 4.49398 4.58802 4.62964 4.67401 4.75907 4.76869 4.80274 4.82496 4.87811 4.89869 4.95414 5.04764 5.08230 5.13406 5.19215 5.27993 5.28819 5.33334 5.38156 5.44722 5.50306 5.57776 5.66331 5.68498 5.74412 5.79075 5.99864 6.08883 6.17169 6.22336 6.23417 6.32200 6.38329 6.62074 7.46606 8.75151 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.003425 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.934190 B = 8173.301598 C = 9269.785321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.065 4.065 3 H 0.054 0.946 4 C 0.018 3.982 5 C -0.602 4.602 6 H 0.054 0.946 7 C -0.043 4.043 8 N -0.943 5.943 9 Si 1.115 2.885 10 H -0.286 1.286 11 H -0.269 1.269 12 H -0.269 1.269 13 C 0.079 3.921 14 N -0.661 5.661 15 C 0.130 3.870 16 H 0.051 0.949 17 C 0.069 3.931 18 N -0.504 5.504 19 C 0.059 3.941 20 C -0.137 4.137 21 C -0.126 4.126 22 C 0.032 3.968 23 C -0.084 4.084 24 C -0.088 4.088 25 C -0.134 4.134 26 C -0.128 4.128 27 C -0.132 4.132 28 C -0.129 4.129 29 H 0.079 0.921 30 H 0.033 0.967 31 H 0.030 0.970 32 H -0.017 1.017 33 H -0.021 1.021 34 H 0.253 0.747 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.344 0.656 38 H 0.021 0.979 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.029 0.971 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.032 0.968 47 H 0.078 0.922 48 H 0.129 0.871 49 H 0.133 0.867 50 H 0.137 0.863 51 H 0.136 0.864 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 4.832 23.950 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.020 4.020 5 C -0.640 4.640 6 H 0.072 0.928 7 C -0.240 4.240 8 N -0.581 5.581 9 Si 0.936 3.064 10 H -0.212 1.212 11 H -0.194 1.194 12 H -0.194 1.194 13 C -0.050 4.050 14 N -0.292 5.292 15 C 0.020 3.980 16 H 0.069 0.931 17 C -0.060 4.060 18 N -0.229 5.229 19 C -0.068 4.068 20 C -0.175 4.175 21 C -0.164 4.164 22 C -0.096 4.096 23 C -0.084 4.084 24 C -0.106 4.106 25 C -0.151 4.151 26 C -0.146 4.146 27 C -0.150 4.150 28 C -0.148 4.148 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.001 0.999 33 H -0.003 1.003 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.164 0.836 38 H 0.039 0.961 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.050 0.950 47 H 0.097 0.903 48 H 0.147 0.853 49 H 0.151 0.849 50 H 0.155 0.845 51 H 0.153 0.847 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.452 4.924 22.772 23.928 hybrid contribution 1.139 -1.165 0.669 1.762 sum -4.312 3.758 23.442 24.129 Atomic orbital electron populations 1.21590 0.94281 1.00055 1.00971 1.20870 0.96946 0.98156 0.92414 0.92798 1.19168 0.93506 0.94762 0.94527 1.22433 1.37908 1.10367 0.93334 0.92819 1.27384 0.94085 0.97269 1.05238 1.70920 1.37993 1.16448 1.32768 0.82969 0.76976 0.74585 0.71873 1.21191 1.19374 1.19399 1.21897 0.96302 0.97256 0.89586 1.61203 1.61500 1.06074 1.00403 1.20460 0.95577 0.93491 0.88437 0.93068 1.22151 0.90665 0.94130 0.99099 1.64786 1.00792 1.28159 1.29125 1.23562 0.91863 1.01765 0.89608 1.22691 0.97100 0.98013 0.99707 1.22340 0.96692 0.97720 0.99654 1.22890 0.92351 0.93578 1.00758 1.19700 0.95503 0.96004 0.97209 1.21154 0.98113 0.93306 0.98001 1.21408 0.98545 0.99372 0.95824 1.21411 0.94699 0.98832 0.99670 1.21299 1.00040 0.95019 0.98602 1.21183 0.97617 0.99735 0.96218 0.90240 0.94779 0.95129 0.99882 1.00265 0.93767 0.92529 0.96586 0.83641 0.96100 0.90357 0.87601 0.95217 0.91676 0.90860 0.92099 0.90314 0.94998 0.90327 0.85325 0.84946 0.84534 0.84651 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.09 7.84 71.98 0.56 -3.52 16 2 C -0.06 -2.57 2.45 -10.79 -0.03 -2.59 16 3 H 0.05 2.15 8.13 -2.39 -0.02 2.14 16 4 C 0.02 0.93 3.76 29.85 0.11 1.04 16 5 C -0.60 -34.26 8.41 25.60 0.22 -34.05 16 6 H 0.05 2.96 7.06 -2.91 -0.02 2.94 16 7 C -0.04 -2.53 5.46 84.66 0.46 -2.07 16 8 N -0.94 -59.58 13.65 21.45 0.29 -59.28 16 9 Si 1.11 50.81 29.90 68.60 2.05 52.86 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 13 C 0.08 2.57 4.41 86.30 0.38 2.95 16 14 N -0.66 -16.89 1.33 -495.44 -0.66 -17.55 16 15 C 0.13 3.04 2.59 44.17 0.11 3.15 16 16 H 0.05 1.25 7.61 -2.38 -0.02 1.23 16 17 C 0.07 1.60 4.71 86.30 0.41 2.01 16 18 N -0.50 -11.41 4.33 -883.02 -3.82 -15.23 16 19 C 0.06 1.42 3.10 86.65 0.27 1.69 16 20 C -0.14 -2.87 7.06 31.80 0.22 -2.64 16 21 C -0.13 -2.41 6.93 31.47 0.22 -2.19 16 22 C 0.03 0.67 6.70 86.44 0.58 1.25 16 23 C -0.08 -1.83 4.66 -19.86 -0.09 -1.93 16 24 C -0.09 -1.88 8.12 22.27 0.18 -1.70 16 25 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 26 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 27 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 28 C -0.13 -2.61 9.67 22.27 0.22 -2.39 16 29 H 0.08 2.40 5.49 -2.39 -0.01 2.39 16 30 H 0.03 1.37 6.95 -2.39 -0.02 1.35 16 31 H 0.03 1.14 7.95 -2.39 -0.02 1.12 16 32 H -0.02 -0.96 8.01 -2.39 -0.02 -0.98 16 33 H -0.02 -1.17 8.00 -2.39 -0.02 -1.19 16 34 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 35 H 0.06 1.95 7.56 -2.39 -0.02 1.93 16 36 H 0.02 0.55 7.98 -2.39 -0.02 0.53 16 37 H 0.34 8.74 7.76 -89.69 -0.70 8.04 16 38 H 0.02 0.55 7.57 -2.39 -0.02 0.53 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.11 2.59 3.72 -2.39 -0.01 2.58 16 41 H 0.03 0.85 5.76 -2.38 -0.01 0.84 16 42 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.03 0.69 7.70 -2.39 -0.02 0.67 16 47 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.13 2.84 5.33 -2.91 -0.02 2.82 16 49 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 50 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 51 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 52 H 0.12 2.20 8.05 -2.91 -0.02 2.18 16 Total: -1.00 -64.44 387.43 2.64 -61.80 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.29 Total: 24.83 kcal Atomic # 6 Polarization: -51.92 SS G_CDS: 4.49 Total: -47.42 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -4.19 Total: -92.07 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.05 Total: 52.86 kcal Total: -64.44 2.64 -61.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510055.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.739 kcal (2) G-P(sol) polarization free energy of solvation -64.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds