Wall clock time and date at job start Tue Mar 31 2020 11:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46640 * 2 1 4 4 C 1.53001 * 109.46653 * 119.99958 * 2 1 3 5 5 C 1.50695 * 109.47381 * 294.99664 * 4 2 1 6 6 H 1.08010 * 119.99979 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00478 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99511 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00306 * 180.02562 * 7 5 4 10 10 H 1.48489 * 109.47288 * 59.99756 * 9 7 5 11 11 H 1.48502 * 109.46806 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46725 * 299.99660 * 9 7 5 13 13 C 1.52995 * 109.46975 * 239.99990 * 2 1 3 14 14 N 1.46903 * 109.47515 * 65.00125 * 13 2 1 15 15 C 1.46896 * 111.00076 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47061 * 34.02310 * 15 14 13 17 17 C 1.53003 * 109.46984 * 154.02241 * 15 14 13 18 18 N 1.46904 * 109.47163 * 184.63115 * 17 15 14 19 19 C 1.48524 * 111.00104 * 58.49354 * 18 17 15 20 20 C 1.54935 * 103.22734 * 159.72187 * 19 18 17 21 21 C 1.54597 * 102.92025 * 322.58592 * 20 19 18 22 22 C 1.47898 * 110.99931 * 175.89341 * 18 17 15 23 23 C 1.50697 * 109.47526 * 274.02176 * 15 14 13 24 24 C 1.38233 * 119.99720 * 319.73181 * 23 15 14 25 25 C 1.38233 * 119.99898 * 179.78542 * 24 23 15 26 26 C 1.38234 * 119.99934 * 0.44044 * 25 24 23 27 27 C 1.38239 * 119.99901 * 359.81033 * 26 25 24 28 28 C 1.38227 * 120.00286 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47434 * 300.00054 * 1 2 3 31 31 H 1.09004 * 109.47444 * 60.00096 * 1 2 3 32 32 H 1.09002 * 109.47238 * 55.00401 * 4 2 1 33 33 H 1.09003 * 109.46787 * 175.00163 * 4 2 1 34 34 H 0.97002 * 119.99886 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.47546 * 304.99594 * 13 2 1 36 36 H 1.08999 * 109.46973 * 185.00257 * 13 2 1 37 37 H 1.00900 * 110.99661 * 303.94964 * 14 13 2 38 38 H 1.08995 * 109.46953 * 64.62441 * 17 15 14 39 39 H 1.09004 * 109.46728 * 304.62718 * 17 15 14 40 40 H 1.09007 * 110.66974 * 278.15786 * 19 18 17 41 41 H 1.08995 * 110.67170 * 41.28672 * 19 18 17 42 42 H 1.09002 * 110.72780 * 204.22396 * 20 19 18 43 43 H 1.09006 * 110.72077 * 80.94297 * 20 19 18 44 44 H 1.08998 * 110.30642 * 263.04027 * 21 20 19 45 45 H 1.08999 * 110.30449 * 140.87579 * 21 20 19 46 46 H 1.09000 * 109.91750 * 333.50231 * 22 18 17 47 47 H 1.08994 * 109.92043 * 94.59990 * 22 18 17 48 48 H 1.08006 * 119.99979 * 359.97438 * 24 23 15 49 49 H 1.08000 * 120.00125 * 180.27295 * 25 24 23 50 50 H 1.08000 * 120.00338 * 179.83416 * 26 25 24 51 51 H 1.08004 * 119.99623 * 179.97438 * 27 26 25 52 52 H 1.07996 * 120.00415 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6770 -1.5182 3.8511 9 14 1.4983 0.5628 5.2497 10 1 0.0184 0.6684 5.3092 11 1 1.9944 -0.1367 6.4621 12 1 2.0896 1.9235 5.1870 13 6 2.0399 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1258 -0.6266 -3.6671 16 1 2.0988 -1.7072 -3.5271 17 6 1.2225 -0.2416 -4.8405 18 7 1.6284 -0.9906 -6.0373 19 6 1.5527 -2.4548 -5.7999 20 6 1.4858 -3.0431 -7.2317 21 6 0.6076 -2.0183 -7.9857 22 6 0.7154 -0.7177 -7.1684 23 6 3.5393 -0.1929 -3.9581 24 6 3.9097 1.1259 -3.7725 25 6 5.2075 1.5228 -4.0352 26 6 6.1326 0.6029 -4.4921 27 6 5.7608 -0.7149 -4.6826 28 6 4.4642 -1.1128 -4.4157 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 3.1262 -0.7995 1.2057 34 1 2.9242 -1.8412 4.7318 35 1 1.6054 -1.7199 -1.2951 36 1 3.1262 -0.7995 -1.2055 37 1 0.6528 0.1792 -2.4753 38 1 1.3126 0.8274 -5.0329 39 1 0.1875 -0.4808 -4.5959 40 1 2.4441 -2.8070 -5.2806 41 1 0.6538 -2.7076 -5.2378 42 1 1.0124 -4.0249 -7.2237 43 1 2.4809 -3.0971 -7.6734 44 1 -0.4272 -2.3593 -8.0194 45 1 0.9888 -1.8636 -8.9951 46 1 -0.2672 -0.4332 -6.7921 47 1 1.1211 0.0815 -7.7885 48 1 3.1858 1.8455 -3.4194 49 1 5.4980 2.5523 -3.8860 50 1 7.1459 0.9135 -4.6999 51 1 6.4835 -1.4336 -5.0400 52 1 4.1737 -2.1422 -4.5649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602510060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:20 Heat of formation + Delta-G solvation = 13.761675 kcal Electronic energy + Delta-G solvation = -26869.434992 eV Core-core repulsion = 23446.663779 eV Total energy + Delta-G solvation = -3422.771212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.87516 -38.56728 -36.93530 -34.73450 -32.61259 -31.54217 -30.71063 -30.34021 -29.12095 -27.42957 -26.67405 -24.85539 -23.48350 -22.47460 -22.17665 -21.42100 -21.01451 -19.93968 -18.92021 -16.77339 -16.51580 -16.24949 -16.07802 -15.57973 -15.11092 -14.69161 -14.47629 -14.32631 -14.12917 -13.73583 -13.52409 -13.26450 -13.05097 -12.92458 -12.54350 -12.40117 -12.31244 -12.18229 -11.86829 -11.66843 -11.59606 -11.43489 -11.38635 -11.11899 -10.87681 -10.86450 -10.78918 -10.69092 -10.60884 -10.33155 -10.17323 -9.70264 -9.14960 -8.96026 -8.65295 -8.60746 -8.42734 -8.30911 -8.20051 -5.95590 -3.96797 1.62216 1.69462 3.35528 3.39906 3.42320 3.66075 4.03311 4.29570 4.42886 4.48538 4.55174 4.65611 4.89815 5.00656 5.06571 5.09012 5.19823 5.23972 5.26327 5.33027 5.39040 5.40091 5.50965 5.51836 5.56710 5.66905 5.72543 5.76596 5.79900 5.82927 5.87000 5.88853 5.94350 6.05585 6.21331 6.25527 6.31288 6.45995 6.57933 6.64751 6.69799 6.75680 6.80865 6.83575 7.01861 7.11363 7.18974 7.26137 7.38134 7.63154 7.72220 7.88232 8.04651 8.48282 9.09347 9.66401 11.15938 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.002964 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.734306 B = 9445.821521 C =10505.819769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 H 0.066 0.934 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.069 3.931 14 N -0.681 5.681 15 C 0.125 3.875 16 H 0.051 0.949 17 C 0.051 3.949 18 N -0.506 5.506 19 C 0.030 3.970 20 C -0.123 4.123 21 C -0.130 4.130 22 C 0.036 3.964 23 C -0.050 4.050 24 C -0.086 4.086 25 C -0.128 4.128 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.104 4.104 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.022 0.978 36 H 0.068 0.932 37 H 0.339 0.661 38 H 0.085 0.915 39 H 0.036 0.964 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.043 0.957 47 H 0.078 0.922 48 H 0.126 0.874 49 H 0.115 0.885 50 H 0.113 0.887 51 H 0.114 0.886 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 -0.148 -24.732 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.008 4.008 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.060 4.060 14 N -0.314 5.314 15 C 0.015 3.985 16 H 0.068 0.932 17 C -0.077 4.077 18 N -0.231 5.231 19 C -0.098 4.098 20 C -0.161 4.161 21 C -0.169 4.169 22 C -0.092 4.092 23 C -0.051 4.051 24 C -0.104 4.104 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.123 4.123 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.158 0.842 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.061 0.939 47 H 0.097 0.903 48 H 0.144 0.856 49 H 0.133 0.867 50 H 0.131 0.869 51 H 0.132 0.868 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.041 0.333 -24.670 24.672 hybrid contribution -1.630 -0.546 1.171 2.079 sum -1.588 -0.213 -23.500 23.554 Atomic orbital electron populations 1.21741 0.96765 1.00343 1.00223 1.21211 0.94721 1.00137 0.94123 0.91599 1.19090 0.96144 0.95278 0.90321 1.21197 1.34679 1.08265 0.91002 0.92644 1.25016 0.95337 0.95092 0.99072 1.69956 1.38988 1.21255 1.23459 0.86696 0.78822 0.80181 0.82531 1.20335 1.21381 1.20264 1.22157 1.00539 0.94092 0.89173 1.60531 1.19259 1.50639 1.00944 1.20417 0.92049 0.96466 0.89537 0.93161 1.22439 0.95689 0.99840 0.89746 1.64737 1.48487 1.05076 1.04776 1.23322 1.01002 0.88485 0.97000 1.22470 1.00574 0.98009 0.95061 1.22383 0.99987 0.94963 0.99517 1.22845 0.94931 0.98175 0.93233 1.19532 0.94117 0.93672 0.97781 1.20973 0.95895 0.95948 0.97589 1.21117 0.93900 0.99307 1.00303 1.21035 0.99117 0.93700 1.00725 1.20972 0.96126 0.96023 1.01384 1.20869 0.93140 0.98854 0.99405 0.94118 0.91865 0.95038 0.96857 0.96679 0.93053 0.95933 0.91377 0.84185 0.89649 0.94592 0.89850 0.93856 0.91182 0.90683 0.91670 0.91064 0.93908 0.90347 0.85565 0.86673 0.86887 0.86822 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.77 37.16 0.33 -2.13 16 2 C -0.08 -1.69 2.55 -90.62 -0.23 -1.92 16 3 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.75 4.45 -27.89 -0.12 0.63 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.14 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.07 1.20 4.94 -3.83 -0.02 1.18 16 14 N -0.68 -9.69 5.56 -107.95 -0.60 -10.29 16 15 C 0.13 1.58 2.11 -68.87 -0.15 1.44 16 16 H 0.05 0.67 6.16 -51.93 -0.32 0.34 16 17 C 0.05 0.56 4.24 -3.82 -0.02 0.54 16 18 N -0.51 -5.14 5.06 -230.46 -1.17 -6.30 16 19 C 0.03 0.28 5.34 -1.90 -0.01 0.27 16 20 C -0.12 -0.95 7.06 -24.87 -0.18 -1.12 16 21 C -0.13 -0.94 6.93 -25.38 -0.18 -1.12 16 22 C 0.04 0.31 6.70 -2.76 -0.02 0.29 16 23 C -0.05 -0.68 4.48 -104.62 -0.47 -1.15 16 24 C -0.09 -1.19 9.32 -39.58 -0.37 -1.56 16 25 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 26 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 27 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 28 C -0.10 -1.35 9.61 -39.58 -0.38 -1.73 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.27 6.95 -51.93 -0.36 0.90 16 31 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.02 0.39 8.06 -51.93 -0.42 -0.02 16 36 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 37 H 0.34 4.48 6.52 -39.29 -0.26 4.22 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.37 7.86 -51.93 -0.41 -0.03 16 40 H 0.08 0.82 5.95 -51.93 -0.31 0.51 16 41 H 0.04 0.42 8.01 -51.93 -0.42 0.00 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.04 0.36 7.67 -51.93 -0.40 -0.04 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.13 1.75 7.73 -52.48 -0.41 1.35 16 49 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 50 H 0.11 1.14 8.06 -52.49 -0.42 0.71 16 51 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 52 H 0.11 1.30 6.51 -52.49 -0.34 0.96 16 LS Contribution 402.36 15.07 6.06 6.06 Total: -1.00 -30.14 402.36 -12.77 -42.91 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -9.40 Total: 2.83 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -3.39 Total: -25.56 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -1.03 Total: -43.07 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.14 -12.77 -42.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.673 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds