Wall clock time and date at job start Tue Mar 31 2020 11:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46640 * 2 1 4 4 C 1.53001 * 109.46653 * 119.99958 * 2 1 3 5 5 C 1.50695 * 109.47381 * 294.99664 * 4 2 1 6 6 H 1.08010 * 119.99979 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00478 * 180.02562 * 5 4 2 8 8 N 1.31511 * 119.99511 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00306 * 180.02562 * 7 5 4 10 10 H 1.48489 * 109.47288 * 59.99756 * 9 7 5 11 11 H 1.48502 * 109.46806 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46725 * 299.99660 * 9 7 5 13 13 C 1.52995 * 109.46975 * 239.99990 * 2 1 3 14 14 N 1.46903 * 109.47515 * 65.00125 * 13 2 1 15 15 C 1.46896 * 111.00076 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47061 * 34.02310 * 15 14 13 17 17 C 1.53003 * 109.46984 * 154.02241 * 15 14 13 18 18 N 1.46904 * 109.47163 * 184.63115 * 17 15 14 19 19 C 1.48524 * 111.00104 * 58.49354 * 18 17 15 20 20 C 1.54935 * 103.22734 * 159.72187 * 19 18 17 21 21 C 1.54597 * 102.92025 * 322.58592 * 20 19 18 22 22 C 1.47898 * 110.99931 * 175.89341 * 18 17 15 23 23 C 1.50697 * 109.47526 * 274.02176 * 15 14 13 24 24 C 1.38233 * 119.99720 * 319.73181 * 23 15 14 25 25 C 1.38233 * 119.99898 * 179.78542 * 24 23 15 26 26 C 1.38234 * 119.99934 * 0.44044 * 25 24 23 27 27 C 1.38239 * 119.99901 * 359.81033 * 26 25 24 28 28 C 1.38227 * 120.00286 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47226 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47434 * 300.00054 * 1 2 3 31 31 H 1.09004 * 109.47444 * 60.00096 * 1 2 3 32 32 H 1.09002 * 109.47238 * 55.00401 * 4 2 1 33 33 H 1.09003 * 109.46787 * 175.00163 * 4 2 1 34 34 H 0.97002 * 119.99886 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.47546 * 304.99594 * 13 2 1 36 36 H 1.08999 * 109.46973 * 185.00257 * 13 2 1 37 37 H 1.00900 * 110.99661 * 303.94964 * 14 13 2 38 38 H 1.08995 * 109.46953 * 64.62441 * 17 15 14 39 39 H 1.09004 * 109.46728 * 304.62718 * 17 15 14 40 40 H 1.09007 * 110.66974 * 278.15786 * 19 18 17 41 41 H 1.08995 * 110.67170 * 41.28672 * 19 18 17 42 42 H 1.09002 * 110.72780 * 204.22396 * 20 19 18 43 43 H 1.09006 * 110.72077 * 80.94297 * 20 19 18 44 44 H 1.08998 * 110.30642 * 263.04027 * 21 20 19 45 45 H 1.08999 * 110.30449 * 140.87579 * 21 20 19 46 46 H 1.09000 * 109.91750 * 333.50231 * 22 18 17 47 47 H 1.08994 * 109.92043 * 94.59990 * 22 18 17 48 48 H 1.08006 * 119.99979 * 359.97438 * 24 23 15 49 49 H 1.08000 * 120.00125 * 180.27295 * 25 24 23 50 50 H 1.08000 * 120.00338 * 179.83416 * 26 25 24 51 51 H 1.08004 * 119.99623 * 179.97438 * 27 26 25 52 52 H 1.07996 * 120.00415 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6770 -1.5182 3.8511 9 14 1.4983 0.5628 5.2497 10 1 0.0184 0.6684 5.3092 11 1 1.9944 -0.1367 6.4621 12 1 2.0896 1.9235 5.1870 13 6 2.0399 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1258 -0.6266 -3.6671 16 1 2.0988 -1.7072 -3.5271 17 6 1.2225 -0.2416 -4.8405 18 7 1.6284 -0.9906 -6.0373 19 6 1.5527 -2.4548 -5.7999 20 6 1.4858 -3.0431 -7.2317 21 6 0.6076 -2.0183 -7.9857 22 6 0.7154 -0.7177 -7.1684 23 6 3.5393 -0.1929 -3.9581 24 6 3.9097 1.1259 -3.7725 25 6 5.2075 1.5228 -4.0352 26 6 6.1326 0.6029 -4.4921 27 6 5.7608 -0.7149 -4.6826 28 6 4.4642 -1.1128 -4.4157 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 3.1262 -0.7995 1.2057 34 1 2.9242 -1.8412 4.7318 35 1 1.6054 -1.7199 -1.2951 36 1 3.1262 -0.7995 -1.2055 37 1 0.6528 0.1792 -2.4753 38 1 1.3126 0.8274 -5.0329 39 1 0.1875 -0.4808 -4.5959 40 1 2.4441 -2.8070 -5.2806 41 1 0.6538 -2.7076 -5.2378 42 1 1.0124 -4.0249 -7.2237 43 1 2.4809 -3.0971 -7.6734 44 1 -0.4272 -2.3593 -8.0194 45 1 0.9888 -1.8636 -8.9951 46 1 -0.2672 -0.4332 -6.7921 47 1 1.1211 0.0815 -7.7885 48 1 3.1858 1.8455 -3.4194 49 1 5.4980 2.5523 -3.8860 50 1 7.1459 0.9135 -4.6999 51 1 6.4835 -1.4336 -5.0400 52 1 4.1737 -2.1422 -4.5649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602510060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:19 Heat of formation + Delta-G solvation = -2.652645 kcal Electronic energy + Delta-G solvation = -26870.146770 eV Core-core repulsion = 23446.663779 eV Total energy + Delta-G solvation = -3423.482991 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79732 -39.38834 -38.31617 -36.16434 -34.42145 -32.68181 -31.70347 -31.45823 -29.79822 -29.00199 -28.10952 -26.37552 -24.47588 -24.13937 -23.23942 -22.26522 -21.67257 -20.98312 -20.52393 -18.53362 -17.72327 -17.14478 -17.01550 -16.64219 -16.55729 -16.13066 -15.76403 -15.35186 -15.11018 -14.85057 -14.75842 -14.46414 -14.20303 -14.06179 -13.87201 -13.67460 -13.36766 -13.31510 -13.28503 -13.05962 -12.76314 -12.62742 -12.45797 -12.29273 -12.25275 -12.13052 -12.04448 -11.89912 -11.67720 -11.64841 -11.45188 -11.42178 -11.07636 -10.93920 -10.53156 -9.64034 -9.45699 -9.44463 -9.32548 -8.17276 -6.26651 0.63190 0.69190 1.39753 1.42773 1.50323 2.41835 2.78782 3.04689 3.16063 3.36534 3.75865 3.76998 3.84347 4.09022 4.10813 4.15835 4.23467 4.27122 4.30002 4.33531 4.34344 4.40448 4.46883 4.53834 4.63161 4.71834 4.75183 4.80021 4.81568 4.85585 4.93313 4.95202 4.98659 5.03910 5.07615 5.18639 5.22456 5.26580 5.31667 5.32586 5.38498 5.48705 5.54583 5.71557 5.75522 5.77320 5.83670 5.89607 5.94935 6.01791 6.15318 6.28620 6.30986 6.49930 6.89252 7.41615 8.94757 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.002964 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.734306 B = 9445.821521 C =10505.819769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 H 0.057 0.943 4 C 0.035 3.965 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.087 3.913 14 N -0.676 5.676 15 C 0.131 3.869 16 H 0.045 0.955 17 C 0.061 3.939 18 N -0.517 5.517 19 C 0.027 3.973 20 C -0.120 4.120 21 C -0.126 4.126 22 C 0.034 3.966 23 C -0.062 4.062 24 C -0.104 4.104 25 C -0.138 4.138 26 C -0.134 4.134 27 C -0.133 4.133 28 C -0.116 4.116 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.068 0.932 32 H -0.011 1.011 33 H -0.018 1.018 34 H 0.262 0.738 35 H 0.022 0.978 36 H 0.047 0.953 37 H 0.348 0.652 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.040 0.960 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.078 0.922 48 H 0.121 0.879 49 H 0.130 0.870 50 H 0.136 0.864 51 H 0.135 0.865 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.944 0.566 -25.959 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.092 4.092 3 H 0.075 0.925 4 C -0.003 4.003 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.042 4.042 14 N -0.309 5.309 15 C 0.021 3.979 16 H 0.063 0.937 17 C -0.068 4.068 18 N -0.241 5.241 19 C -0.100 4.100 20 C -0.158 4.158 21 C -0.164 4.164 22 C -0.094 4.094 23 C -0.062 4.062 24 C -0.122 4.122 25 C -0.156 4.156 26 C -0.152 4.152 27 C -0.151 4.151 28 C -0.135 4.135 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.007 0.993 33 H 0.000 1.000 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.168 0.832 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.098 0.902 46 H 0.064 0.936 47 H 0.096 0.904 48 H 0.139 0.861 49 H 0.148 0.852 50 H 0.154 0.846 51 H 0.153 0.847 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.833 1.059 -25.922 25.956 hybrid contribution -1.300 -0.789 1.502 2.137 sum -2.132 0.270 -24.419 24.514 Atomic orbital electron populations 1.21641 0.94731 1.00652 1.01221 1.20991 0.96308 0.98934 0.92966 0.92494 1.18973 0.93942 0.94548 0.92800 1.21611 1.34491 1.08589 0.92020 0.91989 1.25962 0.95248 0.96095 1.02689 1.70101 1.40245 1.23027 1.24323 0.85562 0.79001 0.78746 0.78134 1.19042 1.21056 1.19334 1.21769 0.99065 0.93980 0.89429 1.60395 1.19928 1.50154 1.00445 1.20382 0.92252 0.95902 0.89332 0.93662 1.22289 0.95420 0.99699 0.89376 1.64716 1.49223 1.05424 1.04780 1.23332 1.00441 0.88205 0.98059 1.22463 1.00788 0.98656 0.93862 1.22380 1.00503 0.93957 0.99582 1.22901 0.94707 0.98979 0.92808 1.19665 0.94620 0.93817 0.98148 1.21057 0.96481 0.96113 0.98586 1.21380 0.93742 1.00367 1.00147 1.21354 1.00101 0.93603 1.00142 1.21299 0.96291 0.96660 1.00823 1.21066 0.93556 0.99228 0.99636 0.94136 0.93561 0.91283 0.99298 0.99994 0.92957 0.95982 0.93464 0.83159 0.90013 0.93877 0.90703 0.94140 0.90010 0.90881 0.90728 0.90188 0.93583 0.90378 0.86107 0.85234 0.84649 0.84748 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.77 71.98 0.63 -3.85 16 2 C -0.07 -3.01 2.55 -10.79 -0.03 -3.04 16 3 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.03 1.87 4.45 29.85 0.13 2.01 16 5 C -0.53 -30.26 8.41 25.60 0.22 -30.04 16 6 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 8 N -0.94 -58.08 13.29 21.45 0.28 -57.79 16 9 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 C 0.09 3.07 4.94 86.30 0.43 3.49 16 14 N -0.68 -18.84 5.56 -495.46 -2.76 -21.60 16 15 C 0.13 3.26 2.11 44.17 0.09 3.35 16 16 H 0.05 1.19 6.16 -2.39 -0.01 1.17 16 17 C 0.06 1.25 4.24 86.30 0.37 1.62 16 18 N -0.52 -9.91 5.06 -883.05 -4.46 -14.38 16 19 C 0.03 0.48 5.34 86.65 0.46 0.94 16 20 C -0.12 -1.64 7.06 31.80 0.22 -1.42 16 21 C -0.13 -1.56 6.93 31.47 0.22 -1.34 16 22 C 0.03 0.52 6.70 86.45 0.58 1.10 16 23 C -0.06 -1.66 4.48 -19.87 -0.09 -1.75 16 24 C -0.10 -2.87 9.32 22.27 0.21 -2.67 16 25 C -0.14 -3.48 10.05 22.27 0.22 -3.26 16 26 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 27 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 28 C -0.12 -2.97 9.61 22.27 0.21 -2.75 16 29 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.05 1.80 6.95 -2.39 -0.02 1.79 16 31 H 0.07 1.94 6.68 -2.38 -0.02 1.93 16 32 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 33 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.02 0.78 8.06 -2.38 -0.02 0.76 16 36 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 37 H 0.35 8.60 6.52 -89.69 -0.59 8.02 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 0.82 7.86 -2.38 -0.02 0.80 16 40 H 0.07 1.43 5.95 -2.38 -0.01 1.42 16 41 H 0.04 0.73 8.01 -2.39 -0.02 0.71 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.05 0.68 7.67 -2.39 -0.02 0.67 16 47 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.12 3.37 7.73 -2.91 -0.02 3.35 16 49 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 50 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 51 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 52 H 0.12 2.75 6.51 -2.91 -0.02 2.73 16 Total: -1.00 -65.71 402.36 0.16 -65.55 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.28 Total: 24.38 kcal Atomic # 6 Polarization: -47.88 SS G_CDS: 4.79 Total: -43.09 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -6.94 Total: -93.77 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.71 0.16 -65.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.900 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds