Wall clock time and date at job start Tue Mar 31 2020 11:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47534 * 2 1 4 4 C 1.53000 * 109.46894 * 120.00724 * 2 1 3 5 5 C 1.50706 * 109.46676 * 294.99428 * 4 2 1 6 6 H 1.08002 * 120.00157 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99655 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00651 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99896 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47473 * 89.99998 * 9 7 5 11 11 H 1.48504 * 109.47492 * 210.00114 * 9 7 5 12 12 H 1.48506 * 109.47057 * 329.99746 * 9 7 5 13 13 C 1.53009 * 109.46770 * 240.00068 * 2 1 3 14 14 N 1.46899 * 109.46993 * 65.00484 * 13 2 1 15 15 C 1.46901 * 110.99795 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.46897 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47022 * 179.97438 * 16 15 14 18 18 N 1.46894 * 109.47213 * 174.51956 * 17 16 15 19 19 C 1.47160 * 111.00147 * 53.67592 * 18 17 16 20 20 C 1.52888 * 108.50541 * 52.15754 * 19 18 17 21 21 C 1.50714 * 109.95981 * 50.39459 * 20 19 18 22 22 C 1.38678 * 118.48887 * 163.47487 * 21 20 19 23 23 C 1.38037 * 120.34886 * 179.97438 * 22 21 20 24 24 C 1.38264 * 119.82258 * 359.54434 * 23 22 21 25 25 C 1.38003 * 119.87421 * 0.33043 * 24 23 22 26 26 C 1.37829 * 121.66166 * 343.09494 * 21 20 19 27 27 C 1.46631 * 110.99921 * 176.66864 * 18 17 16 28 28 H 1.08999 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47262 * 299.99872 * 1 2 3 30 30 H 1.09007 * 109.46864 * 59.99522 * 1 2 3 31 31 H 1.08998 * 109.47728 * 54.99534 * 4 2 1 32 32 H 1.09003 * 109.47160 * 174.99971 * 4 2 1 33 33 H 0.96995 * 120.00342 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.47056 * 304.99791 * 13 2 1 35 35 H 1.09005 * 109.46576 * 185.00179 * 13 2 1 36 36 H 1.00898 * 110.99550 * 303.94660 * 14 13 2 37 37 H 1.09003 * 109.47197 * 59.99675 * 15 14 13 38 38 H 1.09008 * 109.46802 * 299.99965 * 15 14 13 39 39 H 1.09003 * 109.47323 * 59.99922 * 16 15 14 40 40 H 1.08996 * 109.47235 * 299.99951 * 16 15 14 41 41 H 1.08992 * 109.46924 * 54.51404 * 17 16 15 42 42 H 1.09005 * 109.46932 * 294.51821 * 17 16 15 43 43 H 1.09006 * 109.62922 * 171.86880 * 19 18 17 44 44 H 1.09003 * 109.62685 * 292.44827 * 19 18 17 45 45 H 1.09007 * 109.39098 * 170.54297 * 20 19 18 46 46 H 1.08998 * 109.39238 * 290.33433 * 20 19 18 47 47 H 1.07995 * 119.82826 * 359.75072 * 22 21 20 48 48 H 1.07996 * 120.08871 * 179.82327 * 23 22 21 49 49 H 1.08006 * 120.05714 * 180.34886 * 24 23 22 50 50 H 1.08005 * 119.81480 * 179.97438 * 25 24 23 51 51 H 1.09008 * 109.29990 * 168.78693 * 27 18 17 52 52 H 1.08993 * 109.30163 * 49.41509 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9932 -0.4019 3.7282 8 7 2.6771 -1.5185 3.8510 9 14 1.4985 0.5624 5.2496 10 1 0.1716 0.0933 5.7233 11 1 2.5080 0.3530 6.3184 12 1 1.4227 2.0076 4.9167 13 6 2.0400 -0.7213 -1.2494 14 7 1.6514 0.0375 -2.4457 15 6 2.1257 -0.6265 -3.6672 16 6 1.7023 0.1910 -4.8892 17 6 2.1969 -0.5001 -6.1615 18 7 1.6801 0.2116 -7.3379 19 6 2.0120 1.6440 -7.2757 20 6 3.5149 1.7836 -7.0318 21 6 4.2772 0.9377 -8.0191 22 6 5.6300 1.1855 -8.1966 23 6 6.3654 0.4335 -9.0906 24 6 5.7519 -0.5782 -9.8060 25 6 4.4062 -0.8272 -9.6283 26 6 3.6646 -0.0692 -8.7337 27 6 2.1983 -0.3761 -8.5773 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6053 -1.7199 1.2951 32 1 3.1263 -0.7997 1.2055 33 1 2.9243 -1.8415 4.7316 34 1 1.6053 -1.7199 -1.2952 35 1 3.1263 -0.7995 -1.2056 36 1 0.6529 0.1793 -2.4753 37 1 1.6920 -1.6245 -3.7301 38 1 3.2127 -0.7037 -3.6401 39 1 2.1357 1.1892 -4.8265 40 1 0.6154 0.2679 -4.9161 41 1 1.8431 -1.5309 -6.1759 42 1 3.2867 -0.4898 -6.1804 43 1 1.7480 2.1224 -8.2190 44 1 1.4632 2.1118 -6.4584 45 1 3.8052 2.8277 -7.1498 46 1 3.7492 1.4553 -6.0192 47 1 6.1101 1.9732 -7.6351 48 1 7.4181 0.6320 -9.2276 49 1 6.3249 -1.1725 -10.5024 50 1 3.9278 -1.6175 -10.1879 51 1 1.6518 0.0341 -9.4266 52 1 2.0572 -1.4566 -8.5501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602510903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:43 Heat of formation + Delta-G solvation = 4.580418 kcal Electronic energy + Delta-G solvation = -25746.869171 eV Core-core repulsion = 22323.699829 eV Total energy + Delta-G solvation = -3423.169342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85813 -38.01153 -36.96785 -34.54551 -33.07467 -32.61224 -31.63079 -30.12242 -29.53590 -26.97854 -26.24738 -24.76745 -24.31309 -23.06282 -22.50595 -21.95405 -21.23897 -19.41213 -18.87740 -16.99956 -16.60790 -16.27651 -16.14264 -15.55058 -15.41845 -14.92471 -14.65215 -14.59722 -14.11879 -13.94870 -13.84311 -13.56496 -13.38312 -13.00733 -12.69126 -12.51336 -12.28303 -12.25386 -12.05876 -11.89633 -11.68404 -11.51560 -11.41591 -11.32464 -11.16142 -10.98646 -10.83788 -10.80231 -10.65293 -10.30329 -10.16410 -9.68799 -9.12650 -9.09694 -8.93690 -8.88700 -8.62588 -8.31101 -8.10497 -5.95660 -3.96746 1.00787 1.04158 3.34291 3.39889 3.40561 3.44112 3.60927 4.32409 4.38418 4.46708 4.52937 4.56202 4.66076 4.77340 4.82560 4.93795 5.00430 5.10029 5.19277 5.21363 5.25093 5.30422 5.40006 5.41513 5.48132 5.53415 5.59107 5.67163 5.68708 5.72161 5.82120 5.83208 5.85677 6.06796 6.09329 6.11296 6.17566 6.18799 6.28249 6.30461 6.50090 6.59089 6.67649 6.71235 6.78205 6.98000 7.13411 7.20090 7.41202 7.69392 7.72764 7.88713 8.04788 8.48671 9.09664 9.66491 11.15863 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.001880 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.253759 B =14892.216399 C =15310.995185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.691 5.691 15 C 0.059 3.941 16 C -0.117 4.117 17 C 0.050 3.950 18 N -0.525 5.525 19 C 0.050 3.950 20 C -0.123 4.123 21 C -0.073 4.073 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.114 4.114 27 C 0.091 3.909 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.014 0.986 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.338 0.662 37 H 0.025 0.975 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.089 0.911 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.227 3.187 -30.425 30.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.322 5.322 15 C -0.071 4.071 16 C -0.155 4.155 17 C -0.078 4.078 18 N -0.246 5.246 19 C -0.078 4.078 20 C -0.161 4.161 21 C -0.074 4.074 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.142 4.142 25 C -0.133 4.133 26 C -0.116 4.116 27 C -0.038 4.038 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.051 0.949 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.156 0.844 37 H 0.043 0.957 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.107 0.893 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.296 3.440 -30.244 30.525 hybrid contribution 0.328 -0.341 0.824 0.950 sum 2.624 3.099 -29.420 29.699 Atomic orbital electron populations 1.21740 0.96687 1.00418 1.00273 1.21223 0.94874 1.00064 0.94162 0.91676 1.19115 0.96123 0.95369 0.90402 1.21244 1.34525 1.08275 0.90985 0.92550 1.25031 0.95361 0.95138 0.99121 1.69965 1.39077 1.21314 1.23339 0.86624 0.78168 0.80451 0.82929 1.20773 1.21326 1.19888 1.22132 1.00254 0.94426 0.89593 1.60561 1.19576 1.50605 1.01491 1.21872 1.00401 0.95072 0.89729 1.21640 1.01789 0.99817 0.92227 1.22175 0.98086 0.98046 0.89469 1.62705 1.57218 1.02865 1.01775 1.22258 0.93168 0.89392 1.02971 1.21199 0.96657 0.99641 0.98630 1.19589 0.94101 0.96216 0.97464 1.21138 0.93606 1.00164 0.98750 1.21111 0.99840 0.96110 0.96795 1.21090 0.94971 0.98145 1.00025 1.21074 0.94248 0.99590 0.98415 1.20403 0.97622 0.96202 0.97363 1.21135 0.88744 1.00537 0.93352 0.94056 0.91884 0.94923 0.96772 0.96689 0.93121 0.95897 0.91609 0.84373 0.95667 0.91485 0.90929 0.91220 0.90827 0.93984 0.90643 0.89321 0.90159 0.89543 0.86103 0.86119 0.86154 0.86097 0.89341 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.77 37.16 0.33 -2.19 16 2 C -0.08 -1.75 2.55 -90.61 -0.23 -1.98 16 3 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.14 5.14 -3.82 -0.02 1.12 16 14 N -0.69 -10.23 6.50 -113.77 -0.74 -10.97 16 15 C 0.06 0.73 5.69 -3.83 -0.02 0.71 16 16 C -0.12 -1.18 4.69 -26.73 -0.13 -1.31 16 17 C 0.05 0.47 4.35 -3.82 -0.02 0.46 16 18 N -0.52 -4.59 5.12 -236.19 -1.21 -5.80 16 19 C 0.05 0.40 5.41 -3.74 -0.02 0.38 16 20 C -0.12 -1.01 5.04 -27.93 -0.14 -1.15 16 21 C -0.07 -0.67 5.05 -104.60 -0.53 -1.20 16 22 C -0.12 -1.04 9.66 -39.49 -0.38 -1.42 16 23 C -0.12 -0.97 10.05 -39.65 -0.40 -1.37 16 24 C -0.12 -0.96 10.05 -39.66 -0.40 -1.36 16 25 C -0.11 -0.91 9.65 -39.48 -0.38 -1.30 16 26 C -0.11 -0.99 5.24 -104.62 -0.55 -1.54 16 27 C 0.09 0.71 5.54 -5.16 -0.03 0.68 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 30 H 0.03 0.51 6.68 -51.93 -0.35 0.17 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.34 4.74 6.98 -39.29 -0.27 4.47 16 37 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 39 H 0.07 0.76 5.79 -51.93 -0.30 0.45 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.04 0.43 5.77 -51.93 -0.30 0.13 16 43 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 44 H 0.09 0.70 6.82 -51.93 -0.35 0.35 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.79 5.90 -51.93 -0.31 0.48 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 48 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 50 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 51 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 52 H 0.09 0.61 8.06 -51.93 -0.42 0.20 16 LS Contribution 397.23 15.07 5.99 5.99 Total: -1.00 -30.50 397.23 -13.02 -43.52 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -9.35 Total: 1.05 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -3.42 Total: -24.16 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -1.21 Total: -43.23 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.50 -13.02 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.097 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds