Wall clock time and date at job start Tue Mar 31 2020 11:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47534 * 2 1 4 4 C 1.53000 * 109.46894 * 120.00724 * 2 1 3 5 5 C 1.50706 * 109.46676 * 294.99428 * 4 2 1 6 6 H 1.08002 * 120.00157 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99655 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00651 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99896 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47473 * 89.99998 * 9 7 5 11 11 H 1.48504 * 109.47492 * 210.00114 * 9 7 5 12 12 H 1.48506 * 109.47057 * 329.99746 * 9 7 5 13 13 C 1.53009 * 109.46770 * 240.00068 * 2 1 3 14 14 N 1.46899 * 109.46993 * 65.00484 * 13 2 1 15 15 C 1.46901 * 110.99795 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.46897 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47022 * 179.97438 * 16 15 14 18 18 N 1.46894 * 109.47213 * 174.51956 * 17 16 15 19 19 C 1.47160 * 111.00147 * 53.67592 * 18 17 16 20 20 C 1.52888 * 108.50541 * 52.15754 * 19 18 17 21 21 C 1.50714 * 109.95981 * 50.39459 * 20 19 18 22 22 C 1.38678 * 118.48887 * 163.47487 * 21 20 19 23 23 C 1.38037 * 120.34886 * 179.97438 * 22 21 20 24 24 C 1.38264 * 119.82258 * 359.54434 * 23 22 21 25 25 C 1.38003 * 119.87421 * 0.33043 * 24 23 22 26 26 C 1.37829 * 121.66166 * 343.09494 * 21 20 19 27 27 C 1.46631 * 110.99921 * 176.66864 * 18 17 16 28 28 H 1.08999 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47262 * 299.99872 * 1 2 3 30 30 H 1.09007 * 109.46864 * 59.99522 * 1 2 3 31 31 H 1.08998 * 109.47728 * 54.99534 * 4 2 1 32 32 H 1.09003 * 109.47160 * 174.99971 * 4 2 1 33 33 H 0.96995 * 120.00342 * 180.02562 * 8 7 5 34 34 H 1.09003 * 109.47056 * 304.99791 * 13 2 1 35 35 H 1.09005 * 109.46576 * 185.00179 * 13 2 1 36 36 H 1.00898 * 110.99550 * 303.94660 * 14 13 2 37 37 H 1.09003 * 109.47197 * 59.99675 * 15 14 13 38 38 H 1.09008 * 109.46802 * 299.99965 * 15 14 13 39 39 H 1.09003 * 109.47323 * 59.99922 * 16 15 14 40 40 H 1.08996 * 109.47235 * 299.99951 * 16 15 14 41 41 H 1.08992 * 109.46924 * 54.51404 * 17 16 15 42 42 H 1.09005 * 109.46932 * 294.51821 * 17 16 15 43 43 H 1.09006 * 109.62922 * 171.86880 * 19 18 17 44 44 H 1.09003 * 109.62685 * 292.44827 * 19 18 17 45 45 H 1.09007 * 109.39098 * 170.54297 * 20 19 18 46 46 H 1.08998 * 109.39238 * 290.33433 * 20 19 18 47 47 H 1.07995 * 119.82826 * 359.75072 * 22 21 20 48 48 H 1.07996 * 120.08871 * 179.82327 * 23 22 21 49 49 H 1.08006 * 120.05714 * 180.34886 * 24 23 22 50 50 H 1.08005 * 119.81480 * 179.97438 * 25 24 23 51 51 H 1.09008 * 109.29990 * 168.78693 * 27 18 17 52 52 H 1.08993 * 109.30163 * 49.41509 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9932 -0.4019 3.7282 8 7 2.6771 -1.5185 3.8510 9 14 1.4985 0.5624 5.2496 10 1 0.1716 0.0933 5.7233 11 1 2.5080 0.3530 6.3184 12 1 1.4227 2.0076 4.9167 13 6 2.0400 -0.7213 -1.2494 14 7 1.6514 0.0375 -2.4457 15 6 2.1257 -0.6265 -3.6672 16 6 1.7023 0.1910 -4.8892 17 6 2.1969 -0.5001 -6.1615 18 7 1.6801 0.2116 -7.3379 19 6 2.0120 1.6440 -7.2757 20 6 3.5149 1.7836 -7.0318 21 6 4.2772 0.9377 -8.0191 22 6 5.6300 1.1855 -8.1966 23 6 6.3654 0.4335 -9.0906 24 6 5.7519 -0.5782 -9.8060 25 6 4.4062 -0.8272 -9.6283 26 6 3.6646 -0.0692 -8.7337 27 6 2.1983 -0.3761 -8.5773 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6053 -1.7199 1.2951 32 1 3.1263 -0.7997 1.2055 33 1 2.9243 -1.8415 4.7316 34 1 1.6053 -1.7199 -1.2952 35 1 3.1263 -0.7995 -1.2056 36 1 0.6529 0.1793 -2.4753 37 1 1.6920 -1.6245 -3.7301 38 1 3.2127 -0.7037 -3.6401 39 1 2.1357 1.1892 -4.8265 40 1 0.6154 0.2679 -4.9161 41 1 1.8431 -1.5309 -6.1759 42 1 3.2867 -0.4898 -6.1804 43 1 1.7480 2.1224 -8.2190 44 1 1.4632 2.1118 -6.4584 45 1 3.8052 2.8277 -7.1498 46 1 3.7492 1.4553 -6.0192 47 1 6.1101 1.9732 -7.6351 48 1 7.4181 0.6320 -9.2276 49 1 6.3249 -1.1725 -10.5024 50 1 3.9278 -1.6175 -10.1879 51 1 1.6518 0.0341 -9.4266 52 1 2.0572 -1.4566 -8.5501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602510903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:42 Heat of formation + Delta-G solvation = -12.702576 kcal Electronic energy + Delta-G solvation = -25747.618617 eV Core-core repulsion = 22323.699829 eV Total energy + Delta-G solvation = -3423.918788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48243 -38.84951 -38.21649 -36.01447 -34.33533 -33.68027 -32.77620 -31.06904 -30.14190 -28.85504 -27.44595 -26.06307 -24.99394 -24.34229 -23.31784 -23.10334 -22.09470 -20.59625 -20.04025 -18.52792 -17.60615 -17.37081 -16.83421 -16.61318 -16.47254 -16.21289 -15.68805 -15.44343 -15.35521 -15.12233 -14.76961 -14.57671 -14.31463 -14.03981 -13.91162 -13.81119 -13.42368 -13.30508 -13.13296 -13.00403 -12.75865 -12.71659 -12.61673 -12.39931 -12.27547 -12.25482 -12.11326 -11.99987 -11.87333 -11.73029 -11.52317 -11.41220 -11.06268 -10.89930 -10.53253 -9.70531 -9.49863 -9.35615 -9.28365 -8.17080 -6.26295 0.40040 0.43301 1.40484 1.41686 1.52759 2.42377 2.79148 2.89129 3.16142 3.33687 3.75295 3.83390 3.97139 4.03485 4.07143 4.14133 4.20446 4.24189 4.27181 4.28624 4.35940 4.48907 4.49987 4.56144 4.60582 4.64654 4.70396 4.74598 4.78646 4.81278 4.85850 4.88813 4.95014 5.03976 5.06110 5.09701 5.19097 5.23838 5.24377 5.34714 5.40438 5.49273 5.50459 5.56208 5.59197 5.66060 5.80535 5.89644 6.03231 6.08772 6.10003 6.14142 6.31760 6.53900 6.89734 7.41876 8.95000 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024169 B = 0.001880 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.253759 B =14892.216399 C =15310.995185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.062 0.938 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.077 3.923 14 N -0.690 5.690 15 C 0.061 3.939 16 C -0.103 4.103 17 C 0.059 3.941 18 N -0.528 5.528 19 C 0.052 3.948 20 C -0.118 4.118 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.130 4.130 24 C -0.132 4.132 25 C -0.123 4.123 26 C -0.125 4.125 27 C 0.092 3.908 28 H 0.040 0.960 29 H 0.046 0.954 30 H 0.068 0.932 31 H -0.011 1.011 32 H -0.015 1.015 33 H 0.262 0.738 34 H 0.022 0.978 35 H 0.054 0.946 36 H 0.345 0.655 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.127 0.873 48 H 0.136 0.864 49 H 0.140 0.860 50 H 0.139 0.861 51 H 0.098 0.902 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 4.018 -31.659 31.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.052 4.052 14 N -0.322 5.322 15 C -0.068 4.068 16 C -0.141 4.141 17 C -0.070 4.070 18 N -0.249 5.249 19 C -0.076 4.076 20 C -0.157 4.157 21 C -0.090 4.090 22 C -0.153 4.153 23 C -0.148 4.148 24 C -0.150 4.150 25 C -0.141 4.141 26 C -0.126 4.126 27 C -0.037 4.037 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.008 0.992 32 H 0.004 0.996 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.165 0.835 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.145 0.855 48 H 0.154 0.846 49 H 0.158 0.842 50 H 0.157 0.843 51 H 0.116 0.884 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.309 4.282 -31.501 31.818 hybrid contribution 0.682 -0.628 1.141 1.470 sum 1.991 3.654 -30.361 30.645 Atomic orbital electron populations 1.21651 0.94840 1.00674 1.01213 1.21023 0.96346 0.98955 0.93152 0.92506 1.19014 0.94151 0.94605 0.92793 1.21646 1.34358 1.08582 0.92024 0.91994 1.25985 0.95298 0.96170 1.02752 1.70103 1.40282 1.23038 1.24257 0.85481 0.77984 0.79272 0.78521 1.19813 1.20993 1.18746 1.21828 0.99400 0.94255 0.89722 1.60477 1.20189 1.50302 1.01227 1.21898 1.00010 0.95532 0.89392 1.21494 1.01830 0.99316 0.91492 1.22038 0.97366 0.98082 0.89486 1.62715 1.57201 1.03184 1.01819 1.22271 0.92942 0.89079 1.03343 1.21146 0.96802 0.99932 0.97782 1.19771 0.94483 0.96780 0.98008 1.21350 0.93839 1.00769 0.99323 1.21390 1.00733 0.96096 0.96595 1.21401 0.95219 0.98161 1.00171 1.21358 0.94519 0.99885 0.98351 1.20573 0.98150 0.96294 0.97622 1.21187 0.88390 1.00948 0.93137 0.94127 0.93530 0.91338 0.99225 0.99646 0.92965 0.95978 0.92785 0.83513 0.95249 0.92149 0.91071 0.90875 0.90714 0.95034 0.90009 0.89222 0.89469 0.90741 0.85525 0.84589 0.84239 0.84338 0.88392 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 8.77 71.98 0.63 -3.98 16 2 C -0.08 -3.15 2.55 -10.79 -0.03 -3.17 16 3 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.03 1.71 4.45 29.85 0.13 1.84 16 5 C -0.53 -30.20 8.41 25.60 0.22 -29.98 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 8 N -0.94 -57.87 13.29 21.45 0.28 -57.59 16 9 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.08 2.72 5.14 86.31 0.44 3.17 16 14 N -0.69 -19.49 6.50 -513.85 -3.34 -22.83 16 15 C 0.06 1.44 5.69 86.30 0.49 1.93 16 16 C -0.10 -1.95 4.69 30.59 0.14 -1.80 16 17 C 0.06 1.03 4.35 86.31 0.38 1.41 16 18 N -0.53 -8.46 5.12 -901.18 -4.61 -13.07 16 19 C 0.05 0.76 5.41 86.22 0.47 1.23 16 20 C -0.12 -1.87 5.04 29.82 0.15 -1.72 16 21 C -0.09 -1.59 5.05 -19.85 -0.10 -1.69 16 22 C -0.13 -2.30 9.66 22.33 0.22 -2.08 16 23 C -0.13 -1.98 10.05 22.23 0.22 -1.76 16 24 C -0.13 -1.86 10.05 22.22 0.22 -1.64 16 25 C -0.12 -1.79 9.65 22.33 0.22 -1.57 16 26 C -0.12 -2.04 5.24 -19.86 -0.10 -2.14 16 27 C 0.09 1.29 5.54 85.59 0.47 1.76 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.84 6.95 -2.39 -0.02 1.82 16 30 H 0.07 2.00 6.68 -2.38 -0.02 1.98 16 31 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H 0.26 15.22 8.31 -92.71 -0.77 14.44 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.35 8.89 6.98 -89.70 -0.63 8.27 16 37 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.07 1.39 5.79 -2.39 -0.01 1.37 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.03 0.63 5.77 -2.38 -0.01 0.62 16 43 H 0.08 1.11 8.05 -2.38 -0.02 1.09 16 44 H 0.09 1.30 6.82 -2.39 -0.02 1.28 16 45 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.07 1.34 5.90 -2.39 -0.01 1.33 16 47 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 48 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 49 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 50 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 51 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 52 H 0.09 1.16 8.06 -2.39 -0.02 1.14 16 Total: -1.00 -65.72 397.23 -0.76 -66.48 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.25 Total: 20.11 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 4.63 Total: -40.03 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -7.67 Total: -93.48 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.72 -0.76 -66.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.781 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds