Wall clock time and date at job start Tue Mar 31 2020 11:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 N 1.46900 * 109.46966 * 179.97438 * 17 16 15 19 19 C 1.47171 * 111.00238 * 169.99790 * 18 17 16 20 20 C 1.52900 * 108.50425 * 52.12717 * 19 18 17 21 21 C 1.50716 * 109.96398 * 50.33620 * 20 19 18 22 22 C 1.38687 * 118.48509 * 163.27060 * 21 20 19 23 23 C 1.38031 * 120.34625 * 179.82543 * 22 21 20 24 24 C 1.38259 * 119.83389 * 359.97438 * 23 22 21 25 25 C 1.38021 * 119.86667 * 0.05714 * 24 23 22 26 26 C 1.37834 * 121.66727 * 343.21571 * 21 20 19 27 27 C 1.46638 * 111.00143 * 292.97544 * 18 17 16 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 32 32 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 33 33 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 35 35 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 36 36 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 37 37 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 38 38 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 39 39 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 40 40 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 41 41 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 42 42 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 43 43 H 1.08997 * 109.62922 * 171.82822 * 19 18 17 44 44 H 1.08994 * 109.63083 * 292.42360 * 19 18 17 45 45 H 1.09003 * 109.38063 * 170.48235 * 20 19 18 46 46 H 1.08996 * 109.38744 * 290.28298 * 20 19 18 47 47 H 1.07998 * 119.82704 * 359.83095 * 22 21 20 48 48 H 1.08003 * 120.08244 * 179.97438 * 23 22 21 49 49 H 1.07999 * 120.06770 * 180.02562 * 24 23 22 50 50 H 1.07999 * 119.81366 * 180.02562 * 25 24 23 51 51 H 1.09000 * 109.30011 * 49.45324 * 27 18 17 52 52 H 1.09001 * 109.30264 * 168.83180 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 7 1.7917 0.2855 7.3347 19 6 2.0371 -0.4604 8.5794 20 6 3.4888 -0.9404 8.5793 21 6 4.4111 0.2096 8.2660 22 6 5.7599 0.0745 8.5588 23 6 6.6395 1.1024 8.2846 24 6 6.1736 2.2726 7.7145 25 6 4.8313 2.4084 7.4233 26 6 3.9455 1.3772 7.7005 27 6 2.4894 1.5748 7.3700 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 2.9246 -1.8413 -4.7316 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 0.6528 0.1793 2.4752 37 1 1.6920 -1.6245 3.7300 38 1 3.2126 -0.7037 3.6401 39 1 2.1373 1.1894 4.8260 40 1 0.6164 0.2691 4.9165 41 1 1.7623 -1.4979 6.2243 42 1 3.2836 -0.5783 6.1344 43 1 1.8670 0.1913 9.4364 44 1 1.3675 -1.3189 8.6298 45 1 3.7359 -1.3455 9.5607 46 1 3.6128 -1.7177 7.8253 47 1 6.1241 -0.8397 9.0037 48 1 7.6890 0.9927 8.5147 49 1 6.8585 3.0791 7.4979 50 1 4.4683 3.3227 6.9776 51 1 2.4032 2.0578 6.3966 52 1 2.0313 2.2118 8.1267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602510904.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:46 Heat of formation + Delta-G solvation = 3.952845 kcal Electronic energy + Delta-G solvation = -25779.208920 eV Core-core repulsion = 22356.012365 eV Total energy + Delta-G solvation = -3423.196555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80955 -37.89341 -36.98149 -34.62544 -33.17613 -32.43766 -31.58597 -30.39239 -29.26225 -26.97216 -26.27188 -24.94279 -24.09344 -22.93220 -22.52135 -21.99454 -21.42565 -19.33106 -18.86462 -16.92822 -16.47437 -16.22468 -16.09537 -15.61708 -15.35703 -14.93676 -14.87146 -14.57535 -14.16182 -13.90002 -13.77436 -13.62299 -13.39313 -12.96142 -12.67335 -12.42109 -12.33433 -12.22075 -12.10347 -11.85893 -11.74624 -11.47872 -11.42409 -11.41747 -11.15133 -10.92632 -10.86244 -10.75231 -10.58241 -10.29928 -10.14800 -9.68144 -9.11623 -9.06234 -8.93090 -8.86237 -8.64173 -8.30494 -8.08643 -5.95203 -3.96191 1.04351 1.07647 3.34885 3.40960 3.43256 3.44319 3.59210 4.31266 4.43608 4.46259 4.52165 4.56629 4.65960 4.77946 4.81746 4.91281 5.03798 5.14331 5.17608 5.19105 5.30515 5.32318 5.40549 5.43254 5.48163 5.50523 5.59058 5.62481 5.70435 5.77515 5.79667 5.83163 5.86020 6.08286 6.10455 6.16672 6.19551 6.22536 6.28671 6.31465 6.51260 6.60163 6.71011 6.72916 6.78011 6.99150 7.14548 7.21005 7.42903 7.70962 7.73717 7.89520 8.05367 8.49336 9.10247 9.67025 11.16385 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.001989 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.253128 B =14070.585054 C =14677.081938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.065 3.935 14 N -0.691 5.691 15 C 0.060 3.940 16 C -0.112 4.112 17 C 0.051 3.949 18 N -0.525 5.525 19 C 0.052 3.948 20 C -0.119 4.119 21 C -0.079 4.079 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.112 4.112 26 C -0.110 4.110 27 C 0.085 3.915 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.259 0.741 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.338 0.662 37 H 0.024 0.976 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.094 0.906 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.576 3.275 30.076 30.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.322 5.322 15 C -0.070 4.070 16 C -0.151 4.151 17 C -0.077 4.077 18 N -0.246 5.246 19 C -0.076 4.076 20 C -0.158 4.158 21 C -0.079 4.079 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.139 4.139 25 C -0.131 4.131 26 C -0.111 4.111 27 C -0.043 4.043 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.156 0.844 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.141 0.859 51 H 0.112 0.888 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.642 3.657 29.863 30.202 hybrid contribution 0.343 -0.524 -0.816 1.029 sum 2.985 3.133 29.047 29.368 Atomic orbital electron populations 1.21741 0.96690 1.00414 1.00286 1.21219 0.94868 1.00064 0.94150 0.91679 1.19115 0.96118 0.95374 0.90411 1.21245 1.34560 1.08220 0.90985 0.92552 1.25028 0.95380 0.95102 0.99111 1.69966 1.39137 1.21278 1.23346 0.86626 0.78924 0.79805 0.82833 1.20728 1.21346 1.19907 1.22128 1.00246 0.94407 0.89612 1.60545 1.19569 1.50633 1.01483 1.21865 1.00382 0.95002 0.89771 1.21556 1.01638 0.99780 0.92087 1.22150 0.98803 0.97033 0.89735 1.62637 1.55502 1.04048 1.02363 1.22237 0.93923 0.98675 0.92732 1.21145 0.95718 0.96288 1.02613 1.19533 0.94288 0.95026 0.99092 1.21086 0.92837 0.99017 1.00833 1.21097 0.99553 0.93846 0.99453 1.21119 0.95699 0.97895 0.99220 1.21119 0.93319 0.98667 0.99967 1.20392 0.97520 0.94034 0.99170 1.21239 0.87325 0.92605 1.03122 0.91878 0.94061 0.94910 0.96699 0.96766 0.93123 0.95925 0.91626 0.84371 0.95750 0.91523 0.91115 0.91352 0.90878 0.93932 0.90421 0.89916 0.90288 0.90234 0.86304 0.86150 0.86036 0.85894 0.88824 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.77 37.16 0.33 -2.22 16 2 C -0.08 -1.76 2.55 -90.62 -0.23 -1.99 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.16 5.14 -3.83 -0.02 1.14 16 14 N -0.69 -10.45 6.50 -113.78 -0.74 -11.19 16 15 C 0.06 0.76 5.69 -3.82 -0.02 0.74 16 16 C -0.11 -1.19 5.44 -26.73 -0.15 -1.34 16 17 C 0.05 0.48 3.92 -3.83 -0.02 0.46 16 18 N -0.52 -4.59 5.02 -236.19 -1.18 -5.78 16 19 C 0.05 0.38 6.03 -3.73 -0.02 0.36 16 20 C -0.12 -0.87 5.17 -27.93 -0.14 -1.01 16 21 C -0.08 -0.71 5.05 -104.60 -0.53 -1.24 16 22 C -0.12 -1.03 9.66 -39.49 -0.38 -1.41 16 23 C -0.12 -1.02 10.05 -39.65 -0.40 -1.42 16 24 C -0.12 -1.04 10.05 -39.65 -0.40 -1.44 16 25 C -0.11 -1.01 9.65 -39.48 -0.38 -1.39 16 26 C -0.11 -1.01 5.19 -104.63 -0.54 -1.56 16 27 C 0.09 0.73 5.43 -5.16 -0.03 0.70 16 28 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 36 H 0.34 4.83 6.98 -39.29 -0.27 4.56 16 37 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 0.80 6.39 -51.93 -0.33 0.47 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 42 H 0.04 0.44 5.90 -51.93 -0.31 0.14 16 43 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 44 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.60 7.06 -51.93 -0.37 0.23 16 47 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 48 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 49 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 50 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 51 H 0.09 0.83 6.09 -51.93 -0.32 0.51 16 52 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 399.22 15.07 6.02 6.02 Total: -1.00 -30.73 399.22 -13.05 -43.77 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -9.41 Total: 1.18 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -3.44 Total: -24.33 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -1.19 Total: -43.52 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.73 -13.05 -43.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510904.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.724 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds