Wall clock time and date at job start Tue Mar 31 2020 11:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50703 * 109.46801 * 65.00219 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 14 14 N 1.46892 * 109.47486 * 295.00155 * 13 2 1 15 15 C 1.46903 * 111.00235 * 180.02562 * 14 13 2 16 16 C 1.53006 * 109.47219 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47074 * 179.97438 * 16 15 14 18 18 N 1.46900 * 109.46966 * 179.97438 * 17 16 15 19 19 C 1.47171 * 111.00238 * 169.99790 * 18 17 16 20 20 C 1.52900 * 108.50425 * 52.12717 * 19 18 17 21 21 C 1.50716 * 109.96398 * 50.33620 * 20 19 18 22 22 C 1.38687 * 118.48509 * 163.27060 * 21 20 19 23 23 C 1.38031 * 120.34625 * 179.82543 * 22 21 20 24 24 C 1.38259 * 119.83389 * 359.97438 * 23 22 21 25 25 C 1.38021 * 119.86667 * 0.05714 * 24 23 22 26 26 C 1.37834 * 121.66727 * 343.21571 * 21 20 19 27 27 C 1.46638 * 111.00143 * 292.97544 * 18 17 16 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09002 * 109.47069 * 184.99942 * 4 2 1 32 32 H 1.08991 * 109.47625 * 305.00262 * 4 2 1 33 33 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47325 * 55.00085 * 13 2 1 35 35 H 1.09008 * 109.47017 * 174.99994 * 13 2 1 36 36 H 1.00902 * 111.00150 * 56.04186 * 14 13 2 37 37 H 1.08991 * 109.46891 * 299.99685 * 15 14 13 38 38 H 1.09001 * 109.47244 * 59.99987 * 15 14 13 39 39 H 1.09001 * 109.46816 * 300.00451 * 16 15 14 40 40 H 1.09001 * 109.46992 * 59.99871 * 16 15 14 41 41 H 1.08991 * 109.47010 * 299.99707 * 17 16 15 42 42 H 1.09001 * 109.47270 * 60.00098 * 17 16 15 43 43 H 1.08997 * 109.62922 * 171.82822 * 19 18 17 44 44 H 1.08994 * 109.63083 * 292.42360 * 19 18 17 45 45 H 1.09003 * 109.38063 * 170.48235 * 20 19 18 46 46 H 1.08996 * 109.38744 * 290.28298 * 20 19 18 47 47 H 1.07998 * 119.82704 * 359.83095 * 22 21 20 48 48 H 1.08003 * 120.08244 * 179.97438 * 23 22 21 49 49 H 1.07999 * 120.06770 * 180.02562 * 24 23 22 50 50 H 1.07999 * 119.81366 * 180.02562 * 25 24 23 51 51 H 1.09000 * 109.30011 * 49.45324 * 27 18 17 52 52 H 1.09001 * 109.30264 * 168.83180 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0808 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6774 -1.5183 -3.8510 9 14 1.4998 0.5633 -5.2495 10 1 2.5654 1.5429 -5.5817 11 1 1.3132 -0.3705 -6.3891 12 1 0.2286 1.2846 -4.9873 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.1257 -0.6266 3.6672 16 6 1.7033 0.1915 4.8892 17 6 2.1967 -0.5003 6.1614 18 7 1.7917 0.2855 7.3347 19 6 2.0371 -0.4604 8.5794 20 6 3.4888 -0.9404 8.5793 21 6 4.4111 0.2096 8.2660 22 6 5.7599 0.0745 8.5588 23 6 6.6395 1.1024 8.2846 24 6 6.1736 2.2726 7.7145 25 6 4.8313 2.4084 7.4233 26 6 3.9455 1.3772 7.7005 27 6 2.4894 1.5748 7.3700 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.1264 -0.7995 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 2.9246 -1.8413 -4.7316 34 1 1.6053 -1.7198 1.2952 35 1 3.1263 -0.7995 1.2056 36 1 0.6528 0.1793 2.4752 37 1 1.6920 -1.6245 3.7300 38 1 3.2126 -0.7037 3.6401 39 1 2.1373 1.1894 4.8260 40 1 0.6164 0.2691 4.9165 41 1 1.7623 -1.4979 6.2243 42 1 3.2836 -0.5783 6.1344 43 1 1.8670 0.1913 9.4364 44 1 1.3675 -1.3189 8.6298 45 1 3.7359 -1.3455 9.5607 46 1 3.6128 -1.7177 7.8253 47 1 6.1241 -0.8397 9.0037 48 1 7.6890 0.9927 8.5147 49 1 6.8585 3.0791 7.4979 50 1 4.4683 3.3227 6.9776 51 1 2.4032 2.0578 6.3966 52 1 2.0313 2.2118 8.1267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602510904.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:45 Heat of formation + Delta-G solvation = -13.399865 kcal Electronic energy + Delta-G solvation = -25779.961390 eV Core-core repulsion = 22356.012365 eV Total energy + Delta-G solvation = -3423.949025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43902 -38.78796 -38.19383 -36.07330 -34.43502 -33.66747 -32.62983 -31.30625 -29.94878 -28.84412 -27.45953 -26.16355 -25.02123 -24.09858 -23.28642 -23.15827 -22.33921 -20.61621 -19.94564 -18.52984 -17.55923 -17.21180 -16.89726 -16.60611 -16.38242 -16.11713 -15.83519 -15.64119 -15.34407 -15.11723 -14.79412 -14.62539 -14.27134 -14.04131 -13.94687 -13.74453 -13.43998 -13.31305 -13.06865 -12.89793 -12.84531 -12.78444 -12.55054 -12.49199 -12.35029 -12.19667 -12.14610 -12.09326 -11.85589 -11.60466 -11.52219 -11.38111 -11.06671 -10.90091 -10.53345 -9.70245 -9.49918 -9.35043 -9.29522 -8.17270 -6.26456 0.40381 0.43382 1.40409 1.41640 1.52602 2.42319 2.79169 2.87775 3.16067 3.35551 3.74685 3.82549 3.96390 4.03726 4.08038 4.11741 4.20595 4.24198 4.25823 4.31452 4.37957 4.49147 4.50751 4.55619 4.59946 4.62526 4.71956 4.75017 4.76064 4.83582 4.87690 4.89283 4.96347 5.03284 5.04140 5.09389 5.18908 5.22579 5.26727 5.31607 5.39983 5.49000 5.50926 5.56016 5.59551 5.64811 5.80359 5.89414 6.06379 6.08560 6.09839 6.13837 6.31682 6.53925 6.89518 7.41748 8.94921 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.001989 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.253128 B =14070.585054 C =14677.081938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.076 4.076 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.062 0.938 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.262 1.262 13 C 0.077 3.923 14 N -0.691 5.691 15 C 0.062 3.938 16 C -0.101 4.101 17 C 0.059 3.941 18 N -0.529 5.529 19 C 0.053 3.947 20 C -0.115 4.115 21 C -0.092 4.092 22 C -0.131 4.131 23 C -0.131 4.131 24 C -0.133 4.133 25 C -0.127 4.127 26 C -0.122 4.122 27 C 0.088 3.912 28 H 0.045 0.955 29 H 0.040 0.960 30 H 0.068 0.932 31 H -0.015 1.015 32 H -0.010 1.010 33 H 0.262 0.738 34 H 0.023 0.977 35 H 0.053 0.947 36 H 0.346 0.654 37 H 0.032 0.968 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.031 0.969 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.131 0.869 51 H 0.088 0.912 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.620 3.977 31.196 31.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.186 1.186 13 C -0.052 4.052 14 N -0.324 5.324 15 C -0.067 4.067 16 C -0.139 4.139 17 C -0.069 4.069 18 N -0.250 5.250 19 C -0.075 4.075 20 C -0.154 4.154 21 C -0.092 4.092 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.151 4.151 25 C -0.145 4.145 26 C -0.124 4.124 27 C -0.041 4.041 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.003 0.997 32 H 0.008 0.992 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.165 0.835 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.151 0.849 48 H 0.155 0.845 49 H 0.154 0.846 50 H 0.149 0.851 51 H 0.106 0.894 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.675 4.371 31.009 31.360 hybrid contribution 0.689 -0.754 -1.110 1.509 sum 2.364 3.617 29.898 30.209 Atomic orbital electron populations 1.21650 0.94831 1.00707 1.01184 1.21017 0.96346 0.98923 0.93156 0.92584 1.19015 0.94139 0.94637 0.92784 1.21642 1.34423 1.08523 0.92029 0.92024 1.25977 0.95294 0.96124 1.02727 1.70104 1.40326 1.23008 1.24280 0.85488 0.79041 0.78345 0.78434 1.19973 1.20903 1.18623 1.21824 0.99362 0.94290 0.89708 1.60462 1.20201 1.50411 1.01278 1.21885 0.99889 0.95587 0.89363 1.21422 1.01697 0.99077 0.91688 1.22018 0.98050 0.97291 0.89547 1.62644 1.55459 1.04178 1.02703 1.22305 0.94124 0.99009 0.92079 1.21138 0.95389 0.95580 1.03245 1.19805 0.94889 0.95468 0.99072 1.21362 0.92921 0.99730 1.00920 1.21393 1.00544 0.93761 0.99185 1.21390 0.95932 0.98567 0.99221 1.21351 0.93725 0.99170 1.00294 1.20548 0.97898 0.94393 0.99567 1.21219 0.87160 0.92653 1.03026 0.93566 0.94053 0.91366 0.99674 0.99160 0.92950 0.95877 0.92862 0.83493 0.95014 0.92359 0.91826 0.90961 0.90152 0.95041 0.89942 0.88804 0.88875 0.90552 0.84880 0.84483 0.84627 0.85061 0.89405 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.77 71.98 0.63 -4.02 16 2 C -0.08 -3.16 2.55 -10.79 -0.03 -3.19 16 3 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 4 C 0.03 1.71 4.45 29.85 0.13 1.84 16 5 C -0.53 -30.30 8.41 25.60 0.22 -30.09 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 8 N -0.94 -58.00 13.29 21.45 0.28 -57.72 16 9 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 13 C 0.08 2.76 5.14 86.30 0.44 3.20 16 14 N -0.69 -19.99 6.50 -513.89 -3.34 -23.33 16 15 C 0.06 1.50 5.69 86.30 0.49 1.99 16 16 C -0.10 -1.99 5.44 30.59 0.17 -1.82 16 17 C 0.06 1.03 3.92 86.30 0.34 1.37 16 18 N -0.53 -8.45 5.02 -901.17 -4.52 -12.97 16 19 C 0.05 0.66 6.03 86.22 0.52 1.18 16 20 C -0.12 -1.50 5.17 29.82 0.15 -1.35 16 21 C -0.09 -1.57 5.05 -19.85 -0.10 -1.67 16 22 C -0.13 -2.14 9.66 22.33 0.22 -1.92 16 23 C -0.13 -2.08 10.05 22.23 0.22 -1.86 16 24 C -0.13 -2.20 10.05 22.22 0.22 -1.98 16 25 C -0.13 -2.23 9.65 22.34 0.22 -2.01 16 26 C -0.12 -2.18 5.19 -19.87 -0.10 -2.29 16 27 C 0.09 1.41 5.43 85.58 0.46 1.88 16 28 H 0.05 1.84 6.95 -2.39 -0.02 1.82 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 2.01 6.68 -2.39 -0.02 2.00 16 31 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.35 9.09 6.98 -89.69 -0.63 8.47 16 37 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.37 6.39 -2.39 -0.02 1.35 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.29 8.08 -2.39 -0.02 1.27 16 42 H 0.03 0.63 5.90 -2.39 -0.01 0.61 16 43 H 0.08 0.97 8.05 -2.39 -0.02 0.95 16 44 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 1.05 7.06 -2.39 -0.02 1.03 16 47 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 48 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 49 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 50 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 51 H 0.09 1.50 6.09 -2.39 -0.01 1.48 16 52 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -66.20 399.22 -0.64 -66.83 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.24 Total: 20.69 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 4.67 Total: -40.50 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -7.58 Total: -94.02 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -66.20 -0.64 -66.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602510904.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.433 kcal (2) G-P(sol) polarization free energy of solvation -66.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds