Wall clock time and date at job start Tue Mar 31 2020 11:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47220 * 2 1 4 4 C 1.52998 * 109.47122 * 240.00535 * 2 1 3 5 5 C 1.50690 * 109.47422 * 64.99613 * 4 2 1 6 6 H 1.08007 * 120.00096 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00374 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00477 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47448 * 89.99806 * 9 7 5 11 11 H 1.48500 * 109.47525 * 210.00306 * 9 7 5 12 12 H 1.48505 * 109.47135 * 329.99937 * 9 7 5 13 13 C 1.52997 * 109.47254 * 120.00110 * 2 1 3 14 14 N 1.46905 * 109.47195 * 294.99922 * 13 2 1 15 15 C 1.46895 * 110.99975 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.47295 * 180.02562 * 15 14 13 17 17 H 1.09006 * 109.47058 * 305.28267 * 16 15 14 18 18 C 1.53006 * 109.47694 * 185.28629 * 16 15 14 19 19 N 1.46900 * 109.47333 * 65.28378 * 16 15 14 20 20 C 1.47160 * 111.00054 * 165.30296 * 19 16 15 21 21 C 1.52899 * 108.50979 * 52.15540 * 20 19 16 22 22 C 1.50710 * 109.96405 * 50.38133 * 21 20 19 23 23 C 1.38671 * 118.49531 * 163.13053 * 22 21 20 24 24 C 1.38033 * 120.35075 * 179.84226 * 23 22 21 25 25 C 1.38260 * 119.83228 * 359.97121 * 24 23 22 26 26 C 1.38014 * 119.86615 * 0.07416 * 25 24 23 27 27 C 1.37844 * 121.65777 * 343.11158 * 22 21 20 28 28 C 1.46634 * 111.00064 * 288.28506 * 19 16 15 29 29 H 1.09001 * 109.47220 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47247 * 59.99655 * 1 2 3 31 31 H 1.09004 * 109.46873 * 299.99883 * 1 2 3 32 32 H 1.09004 * 109.46984 * 184.99904 * 4 2 1 33 33 H 1.09006 * 109.46638 * 304.99674 * 4 2 1 34 34 H 0.96993 * 120.00416 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47210 * 55.00077 * 13 2 1 36 36 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 37 37 H 1.00895 * 111.00157 * 303.95214 * 14 13 2 38 38 H 1.09005 * 109.47163 * 300.00123 * 15 14 13 39 39 H 1.08999 * 109.47486 * 60.00067 * 15 14 13 40 40 H 1.09006 * 109.46572 * 299.99935 * 18 16 15 41 41 H 1.09002 * 109.46826 * 59.99220 * 18 16 15 42 42 H 1.08996 * 109.47572 * 180.02562 * 18 16 15 43 43 H 1.09000 * 109.62882 * 171.86046 * 20 19 16 44 44 H 1.08998 * 109.63447 * 292.24735 * 20 19 16 45 45 H 1.08998 * 109.38892 * 170.53336 * 21 20 19 46 46 H 1.08999 * 109.38461 * 290.33384 * 21 20 19 47 47 H 1.08008 * 119.82366 * 359.85874 * 23 22 21 48 48 H 1.08002 * 120.08161 * 179.97438 * 24 23 22 49 49 H 1.07995 * 120.07103 * 180.09681 * 25 24 23 50 50 H 1.07997 * 119.81482 * 180.02562 * 26 25 24 51 51 H 1.09001 * 109.29663 * 49.45301 * 28 19 16 52 52 H 1.08998 * 109.30453 * 168.82257 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0571 -2.4765 6 1 1.0805 0.9747 -2.3756 7 6 1.9923 -0.4020 -3.7283 8 7 2.6747 -1.5196 -3.8513 9 14 1.4987 0.5630 -5.2496 10 1 2.5647 1.5419 -5.5824 11 1 1.3108 -0.3707 -6.3889 12 1 0.2280 1.2853 -4.9869 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4457 15 6 2.1258 -0.6265 3.6671 16 6 1.7025 0.1908 4.8892 17 1 2.0570 1.2159 4.7813 18 6 2.3074 -0.4278 6.1511 19 7 0.2374 0.1881 4.9965 20 6 -0.1950 0.6540 6.3238 21 6 0.4819 1.9943 6.6121 22 6 0.2825 2.9321 5.4494 23 6 0.5017 4.2871 5.6471 24 6 0.3335 5.1798 4.6078 25 6 -0.0550 4.7208 3.3629 26 6 -0.2744 3.3726 3.1652 27 6 -0.1083 2.4742 4.2093 28 6 -0.3679 1.0140 3.9469 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7993 -1.2056 33 1 1.6053 -1.7197 -1.2952 34 1 2.9213 -1.8429 -4.7319 35 1 1.6054 -1.7198 1.2951 36 1 3.1263 -0.7995 1.2055 37 1 1.9882 0.9872 2.3967 38 1 1.6922 -1.6246 3.7300 39 1 3.2128 -0.7037 3.6400 40 1 1.9529 -1.4529 6.2590 41 1 3.3945 -0.4258 6.0714 42 1 2.0054 0.1542 7.0218 43 1 -1.2775 0.7811 6.3325 44 1 0.0940 -0.0758 7.0801 45 1 0.0472 2.4335 7.5100 46 1 1.5489 1.8347 6.7674 47 1 0.8060 4.6457 6.6194 48 1 0.5050 6.2342 4.7668 49 1 -0.1863 5.4156 2.5467 50 1 -0.5775 3.0149 2.1923 51 1 0.0585 0.7397 2.9820 52 1 -1.4433 0.8378 3.9251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602531269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:39 Heat of formation + Delta-G solvation = 20.160685 kcal Electronic energy + Delta-G solvation = -27501.970804 eV Core-core repulsion = 24079.477074 eV Total energy + Delta-G solvation = -3422.493731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73857 -38.06418 -36.61759 -34.26486 -32.64692 -32.60042 -31.51812 -29.92705 -29.27822 -26.97623 -26.08783 -24.74693 -23.99591 -23.34050 -22.24236 -21.99550 -21.24207 -19.32851 -18.54425 -16.79722 -16.32723 -16.25656 -15.83339 -15.43938 -14.87607 -14.83408 -14.55772 -14.41808 -14.02345 -13.81670 -13.67177 -13.26577 -12.83891 -12.80986 -12.46966 -12.29872 -12.26036 -12.09733 -12.02023 -11.68733 -11.51906 -11.42661 -11.34516 -11.21106 -11.01512 -10.93505 -10.84618 -10.70865 -10.55167 -10.27371 -10.17058 -9.67980 -9.13405 -8.93834 -8.80095 -8.61461 -8.31523 -8.28712 -7.87070 -5.96360 -3.97397 1.32272 1.36007 3.33613 3.40121 3.43291 3.71667 3.91766 4.35689 4.50796 4.57479 4.76327 4.83849 4.90502 4.96040 5.04030 5.06802 5.15359 5.31366 5.39520 5.39548 5.42965 5.48585 5.53633 5.61132 5.61914 5.71417 5.78297 5.79312 5.84629 5.91150 5.95854 6.00099 6.05059 6.15669 6.19613 6.35037 6.42174 6.46405 6.51109 6.55531 6.64168 6.74793 7.00249 7.01323 7.12555 7.18705 7.20834 7.23670 7.37998 7.60862 7.71188 7.87194 8.04043 8.47888 9.09075 9.65949 11.15182 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.003203 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.228749 B = 8738.542777 C =10013.271806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.060 3.940 14 N -0.677 5.677 15 C 0.065 3.935 16 C 0.079 3.921 17 H 0.045 0.955 18 C -0.155 4.155 19 N -0.508 5.508 20 C 0.047 3.953 21 C -0.120 4.120 22 C -0.088 4.088 23 C -0.123 4.123 24 C -0.129 4.129 25 C -0.121 4.121 26 C -0.111 4.111 27 C -0.096 4.096 28 C 0.049 3.951 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.011 0.989 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.335 0.665 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.119 0.881 50 H 0.126 0.874 51 H 0.159 0.841 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 7.617 23.376 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.068 4.068 14 N -0.307 5.307 15 C -0.065 4.065 16 C -0.030 4.030 17 H 0.063 0.937 18 C -0.212 4.212 19 N -0.230 5.230 20 C -0.081 4.081 21 C -0.158 4.158 22 C -0.089 4.089 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.139 4.139 26 C -0.129 4.129 27 C -0.098 4.098 28 C -0.079 4.079 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.152 0.848 38 H 0.099 0.901 39 H 0.049 0.951 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.138 0.862 50 H 0.144 0.856 51 H 0.176 0.824 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.512 6.664 23.207 24.563 hybrid contribution 1.047 1.763 -0.805 2.203 sum -3.465 8.428 22.402 24.184 Atomic orbital electron populations 1.21607 0.95715 1.00682 0.99987 1.21195 0.95950 0.98837 0.94125 0.92962 1.19109 0.95859 0.95587 0.90427 1.21234 1.34555 1.08217 0.90998 0.92601 1.25020 0.95379 0.95077 0.99082 1.69966 1.39195 1.21177 1.23348 0.86644 0.78914 0.79815 0.82921 1.20807 1.21316 1.19878 1.22204 0.97294 0.97885 0.89380 1.60564 1.62190 1.05840 1.02116 1.22024 0.96723 0.98907 0.88821 1.21672 0.88052 0.98173 0.95061 0.93664 1.22042 1.00402 1.01841 0.96963 1.62599 1.07267 1.50924 1.02182 1.22278 0.99892 0.93618 0.92345 1.21211 1.02017 0.96308 0.96248 1.19538 1.00834 0.93936 0.94544 1.21018 1.01302 0.92883 0.98871 1.21022 1.00964 0.99257 0.93461 1.21122 0.99835 0.95889 0.97087 1.21195 0.99777 0.92960 0.99006 1.20577 0.98372 0.98192 0.92641 1.22209 1.00385 0.84828 1.00429 0.94030 0.92795 0.94092 0.97018 0.96540 0.93122 0.91306 0.95681 0.84810 0.90112 0.95064 0.91605 0.92360 0.91967 0.90849 0.90206 0.90893 0.90294 0.86806 0.86560 0.86248 0.85592 0.82432 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.89 37.16 0.33 -1.95 16 2 C -0.08 -1.62 2.48 -90.62 -0.22 -1.85 16 3 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.23 8.41 -34.45 -0.29 -14.52 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.06 1.00 5.07 -3.82 -0.02 0.98 16 14 N -0.68 -9.18 2.66 -113.78 -0.30 -9.48 16 15 C 0.06 0.78 5.28 -3.83 -0.02 0.76 16 16 C 0.08 0.84 1.72 -67.71 -0.12 0.72 16 17 H 0.05 0.54 6.10 -51.93 -0.32 0.22 16 18 C -0.15 -1.33 8.15 37.16 0.30 -1.03 16 19 N -0.51 -5.60 4.88 -228.20 -1.11 -6.72 16 20 C 0.05 0.44 5.38 -3.73 -0.02 0.42 16 21 C -0.12 -1.08 4.94 -27.93 -0.14 -1.21 16 22 C -0.09 -0.97 5.07 -104.60 -0.53 -1.50 16 23 C -0.12 -1.29 9.66 -39.50 -0.38 -1.67 16 24 C -0.13 -1.35 10.05 -39.65 -0.40 -1.75 16 25 C -0.12 -1.35 10.05 -39.66 -0.40 -1.75 16 26 C -0.11 -1.33 9.65 -39.48 -0.38 -1.71 16 27 C -0.10 -1.14 5.13 -104.62 -0.54 -1.68 16 28 C 0.05 0.59 5.36 -5.16 -0.03 0.56 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 31 H 0.04 0.66 6.83 -51.93 -0.35 0.30 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.33 4.55 8.64 -39.29 -0.34 4.21 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.48 4.90 -51.93 -0.25 0.22 16 43 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 44 H 0.08 0.65 6.75 -51.93 -0.35 0.30 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.70 5.51 -51.93 -0.29 0.41 16 47 H 0.11 0.98 8.06 -52.48 -0.42 0.56 16 48 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 49 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 50 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 51 H 0.16 2.09 3.51 -51.93 -0.18 1.90 16 52 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -29.38 389.41 -12.04 -41.41 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -9.13 Total: 3.62 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: -3.07 Total: -25.12 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: -0.68 Total: -42.45 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.38 -12.04 -41.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602531269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.575 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds