Wall clock time and date at job start Tue Mar 31 2020 11:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47220 * 2 1 4 4 C 1.52998 * 109.47122 * 240.00535 * 2 1 3 5 5 C 1.50690 * 109.47422 * 64.99613 * 4 2 1 6 6 H 1.08007 * 120.00096 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00374 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00477 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47448 * 89.99806 * 9 7 5 11 11 H 1.48500 * 109.47525 * 210.00306 * 9 7 5 12 12 H 1.48505 * 109.47135 * 329.99937 * 9 7 5 13 13 C 1.52997 * 109.47254 * 120.00110 * 2 1 3 14 14 N 1.46905 * 109.47195 * 294.99922 * 13 2 1 15 15 C 1.46895 * 110.99975 * 180.02562 * 14 13 2 16 16 C 1.52995 * 109.47295 * 180.02562 * 15 14 13 17 17 H 1.09006 * 109.47058 * 305.28267 * 16 15 14 18 18 C 1.53006 * 109.47694 * 185.28629 * 16 15 14 19 19 N 1.46900 * 109.47333 * 65.28378 * 16 15 14 20 20 C 1.47160 * 111.00054 * 165.30296 * 19 16 15 21 21 C 1.52899 * 108.50979 * 52.15540 * 20 19 16 22 22 C 1.50710 * 109.96405 * 50.38133 * 21 20 19 23 23 C 1.38671 * 118.49531 * 163.13053 * 22 21 20 24 24 C 1.38033 * 120.35075 * 179.84226 * 23 22 21 25 25 C 1.38260 * 119.83228 * 359.97121 * 24 23 22 26 26 C 1.38014 * 119.86615 * 0.07416 * 25 24 23 27 27 C 1.37844 * 121.65777 * 343.11158 * 22 21 20 28 28 C 1.46634 * 111.00064 * 288.28506 * 19 16 15 29 29 H 1.09001 * 109.47220 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47247 * 59.99655 * 1 2 3 31 31 H 1.09004 * 109.46873 * 299.99883 * 1 2 3 32 32 H 1.09004 * 109.46984 * 184.99904 * 4 2 1 33 33 H 1.09006 * 109.46638 * 304.99674 * 4 2 1 34 34 H 0.96993 * 120.00416 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.47210 * 55.00077 * 13 2 1 36 36 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 37 37 H 1.00895 * 111.00157 * 303.95214 * 14 13 2 38 38 H 1.09005 * 109.47163 * 300.00123 * 15 14 13 39 39 H 1.08999 * 109.47486 * 60.00067 * 15 14 13 40 40 H 1.09006 * 109.46572 * 299.99935 * 18 16 15 41 41 H 1.09002 * 109.46826 * 59.99220 * 18 16 15 42 42 H 1.08996 * 109.47572 * 180.02562 * 18 16 15 43 43 H 1.09000 * 109.62882 * 171.86046 * 20 19 16 44 44 H 1.08998 * 109.63447 * 292.24735 * 20 19 16 45 45 H 1.08998 * 109.38892 * 170.53336 * 21 20 19 46 46 H 1.08999 * 109.38461 * 290.33384 * 21 20 19 47 47 H 1.08008 * 119.82366 * 359.85874 * 23 22 21 48 48 H 1.08002 * 120.08161 * 179.97438 * 24 23 22 49 49 H 1.07995 * 120.07103 * 180.09681 * 25 24 23 50 50 H 1.07997 * 119.81482 * 180.02562 * 26 25 24 51 51 H 1.09001 * 109.29663 * 49.45301 * 28 19 16 52 52 H 1.08998 * 109.30453 * 168.82257 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0571 -2.4765 6 1 1.0805 0.9747 -2.3756 7 6 1.9923 -0.4020 -3.7283 8 7 2.6747 -1.5196 -3.8513 9 14 1.4987 0.5630 -5.2496 10 1 2.5647 1.5419 -5.5824 11 1 1.3108 -0.3707 -6.3889 12 1 0.2280 1.2853 -4.9869 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0374 2.4457 15 6 2.1258 -0.6265 3.6671 16 6 1.7025 0.1908 4.8892 17 1 2.0570 1.2159 4.7813 18 6 2.3074 -0.4278 6.1511 19 7 0.2374 0.1881 4.9965 20 6 -0.1950 0.6540 6.3238 21 6 0.4819 1.9943 6.6121 22 6 0.2825 2.9321 5.4494 23 6 0.5017 4.2871 5.6471 24 6 0.3335 5.1798 4.6078 25 6 -0.0550 4.7208 3.3629 26 6 -0.2744 3.3726 3.1652 27 6 -0.1083 2.4742 4.2093 28 6 -0.3679 1.0140 3.9469 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7993 -1.2056 33 1 1.6053 -1.7197 -1.2952 34 1 2.9213 -1.8429 -4.7319 35 1 1.6054 -1.7198 1.2951 36 1 3.1263 -0.7995 1.2055 37 1 1.9882 0.9872 2.3967 38 1 1.6922 -1.6246 3.7300 39 1 3.2128 -0.7037 3.6400 40 1 1.9529 -1.4529 6.2590 41 1 3.3945 -0.4258 6.0714 42 1 2.0054 0.1542 7.0218 43 1 -1.2775 0.7811 6.3325 44 1 0.0940 -0.0758 7.0801 45 1 0.0472 2.4335 7.5100 46 1 1.5489 1.8347 6.7674 47 1 0.8060 4.6457 6.6194 48 1 0.5050 6.2342 4.7668 49 1 -0.1863 5.4156 2.5467 50 1 -0.5775 3.0149 2.1923 51 1 0.0585 0.7397 2.9820 52 1 -1.4433 0.8378 3.9251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602531269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:39 Heat of formation + Delta-G solvation = 5.122592 kcal Electronic energy + Delta-G solvation = -27502.622905 eV Core-core repulsion = 24079.477074 eV Total energy + Delta-G solvation = -3423.145831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56220 -38.99923 -37.95358 -35.72103 -34.22134 -33.46247 -32.83573 -30.78400 -30.11766 -28.86433 -27.35315 -25.87371 -25.16232 -24.34989 -23.63074 -22.95328 -22.10229 -20.81547 -19.55081 -18.46134 -17.62330 -17.13650 -16.75646 -16.50851 -16.37004 -15.91568 -15.75218 -15.46996 -15.36614 -14.95875 -14.50066 -14.40283 -14.18541 -14.08126 -13.68516 -13.38762 -13.25777 -13.15365 -13.03200 -12.96709 -12.80558 -12.75467 -12.57481 -12.28923 -12.26218 -12.18486 -12.17540 -12.00133 -11.78927 -11.73184 -11.45630 -11.33659 -11.06204 -10.84147 -10.52119 -9.66072 -9.47585 -9.15549 -8.92797 -8.16380 -6.25173 0.49962 0.52515 1.40411 1.41269 1.52280 2.42632 2.88843 3.09399 3.17147 3.24541 3.83165 3.95839 4.00688 4.08809 4.18984 4.22226 4.27317 4.28115 4.35780 4.36609 4.48851 4.55827 4.63387 4.69261 4.70744 4.74618 4.79802 4.82777 4.92279 4.94824 4.96897 5.03010 5.04771 5.10795 5.18830 5.19225 5.22915 5.31852 5.41849 5.47898 5.51100 5.54789 5.57660 5.63172 5.68398 5.80966 5.86431 5.91192 6.05254 6.19700 6.31785 6.32156 6.38729 6.45349 6.91152 7.43013 8.95715 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.003203 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.228749 B = 8738.542777 C =10013.271806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.071 4.071 3 H 0.051 0.949 4 C 0.033 3.967 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.075 3.925 14 N -0.668 5.668 15 C 0.066 3.934 16 C 0.087 3.913 17 H 0.036 0.964 18 C -0.150 4.150 19 N -0.517 5.517 20 C 0.047 3.953 21 C -0.115 4.115 22 C -0.097 4.097 23 C -0.129 4.129 24 C -0.134 4.134 25 C -0.133 4.133 26 C -0.128 4.128 27 C -0.108 4.108 28 C 0.054 3.946 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.068 0.932 32 H -0.016 1.016 33 H -0.011 1.011 34 H 0.261 0.739 35 H 0.063 0.937 36 H 0.017 0.983 37 H 0.337 0.663 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.130 0.870 50 H 0.120 0.880 51 H 0.145 0.855 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 9.115 25.217 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.784 3.216 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.187 1.187 13 C -0.053 4.053 14 N -0.298 5.298 15 C -0.064 4.064 16 C -0.022 4.022 17 H 0.054 0.946 18 C -0.208 4.208 19 N -0.238 5.238 20 C -0.081 4.081 21 C -0.153 4.153 22 C -0.097 4.097 23 C -0.146 4.146 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.147 4.147 27 C -0.109 4.109 28 C -0.074 4.074 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.002 0.998 33 H 0.008 0.992 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.035 0.965 37 H 0.154 0.846 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.153 0.847 48 H 0.155 0.845 49 H 0.148 0.852 50 H 0.138 0.862 51 H 0.162 0.838 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.862 8.174 25.070 26.813 hybrid contribution 1.155 1.299 -1.332 2.190 sum -3.706 9.473 23.738 25.826 Atomic orbital electron populations 1.21492 0.94591 1.00378 1.00457 1.20983 0.96711 0.98218 0.93128 0.93026 1.19002 0.93970 0.94688 0.92796 1.21642 1.34275 1.08489 0.92071 0.92099 1.25941 0.95340 0.96078 1.02618 1.70101 1.40459 1.22910 1.24217 0.85534 0.79023 0.78395 0.78638 1.19967 1.20996 1.18705 1.21883 0.96536 0.97469 0.89455 1.60553 1.62104 1.05611 1.01516 1.22073 0.96925 0.98761 0.88591 1.21587 0.87951 0.97426 0.95202 0.94569 1.22017 1.00688 1.01856 0.96216 1.62589 1.07409 1.50960 1.02867 1.22334 0.99752 0.94320 0.91648 1.21211 1.02389 0.95632 0.96026 1.19823 1.00340 0.94764 0.94781 1.21324 1.00791 0.92695 0.99835 1.21326 1.00236 1.00469 0.93116 1.21334 1.00000 0.95774 0.98006 1.21285 1.00670 0.93667 0.99039 1.20595 0.99191 0.97924 0.93220 1.22021 0.99821 0.85369 1.00199 0.94678 0.94516 0.91309 0.99758 0.99225 0.92997 0.91887 0.96453 0.84559 0.90723 0.94649 0.91560 0.91702 0.90571 0.91245 0.88595 0.89231 0.89714 0.84731 0.84538 0.85246 0.86192 0.83824 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.19 8.89 71.98 0.64 -3.55 16 2 C -0.07 -2.87 2.48 -10.80 -0.03 -2.90 16 3 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 4 C 0.03 1.74 4.45 29.84 0.13 1.87 16 5 C -0.53 -29.84 8.41 25.60 0.22 -29.63 16 6 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 8 N -0.94 -57.61 13.29 21.45 0.28 -57.32 16 9 Si 0.96 44.74 29.54 68.60 2.03 46.76 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 13 C 0.08 2.53 5.07 86.30 0.44 2.97 16 14 N -0.67 -17.84 2.66 -513.90 -1.36 -19.20 16 15 C 0.07 1.52 5.28 86.30 0.46 1.97 16 16 C 0.09 1.70 1.72 44.92 0.08 1.78 16 17 H 0.04 0.79 6.10 -2.38 -0.01 0.78 16 18 C -0.15 -2.21 8.15 71.98 0.59 -1.62 16 19 N -0.52 -10.64 4.88 -875.89 -4.27 -14.91 16 20 C 0.05 0.77 5.38 86.22 0.46 1.24 16 21 C -0.11 -1.75 4.94 29.82 0.15 -1.60 16 22 C -0.10 -1.95 5.07 -19.85 -0.10 -2.05 16 23 C -0.13 -2.40 9.66 22.32 0.22 -2.18 16 24 C -0.13 -2.54 10.05 22.23 0.22 -2.32 16 25 C -0.13 -2.84 10.05 22.22 0.22 -2.62 16 26 C -0.13 -3.02 9.65 22.34 0.22 -2.81 16 27 C -0.11 -2.46 5.13 -19.86 -0.10 -2.56 16 28 C 0.05 1.26 5.36 85.58 0.46 1.72 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.04 1.48 6.95 -2.39 -0.02 1.46 16 31 H 0.07 2.18 6.83 -2.38 -0.02 2.16 16 32 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 33 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.02 0.60 8.14 -2.39 -0.02 0.59 16 37 H 0.34 8.98 8.64 -89.70 -0.78 8.20 16 38 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.92 4.90 -2.39 -0.01 0.91 16 43 H 0.07 1.20 8.05 -2.39 -0.02 1.18 16 44 H 0.10 1.27 6.75 -2.39 -0.02 1.25 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.08 1.22 5.51 -2.39 -0.01 1.21 16 47 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 48 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 49 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 50 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16 51 H 0.15 3.74 3.51 -2.39 -0.01 3.73 16 52 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -63.92 389.41 1.51 -62.41 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.11 Total: 24.25 kcal Atomic # 6 Polarization: -46.71 SS G_CDS: 4.73 Total: -41.98 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -5.35 Total: -91.43 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -63.92 1.51 -62.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602531269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.531 kcal (2) G-P(sol) polarization free energy of solvation -63.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds