Wall clock time and date at job start Tue Mar 31 2020 11:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47532 * 2 1 4 4 C 1.52998 * 109.47454 * 239.99994 * 2 1 3 5 5 N 1.46897 * 109.47495 * 183.54235 * 4 2 1 6 6 C 1.46904 * 111.00268 * 188.14222 * 5 4 2 7 7 C 1.52995 * 109.47035 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46963 * 304.99930 * 7 6 5 9 9 C 1.52997 * 109.47751 * 64.99856 * 7 6 5 10 10 C 1.53002 * 109.46956 * 185.00012 * 7 6 5 11 11 C 1.50703 * 109.46935 * 174.99318 * 10 7 6 12 12 H 1.07993 * 120.00330 * 0.02562 * 11 10 7 13 13 C 1.37881 * 119.99911 * 179.97438 * 11 10 7 14 14 N 1.31508 * 119.99962 * 179.72630 * 13 11 10 15 15 Si 1.86805 * 119.99741 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.46645 * 269.71994 * 15 13 11 17 17 H 1.48490 * 109.47262 * 29.71696 * 15 13 11 18 18 H 1.48493 * 109.46997 * 149.72307 * 15 13 11 19 19 N 1.46902 * 109.46923 * 120.00215 * 2 1 3 20 20 C 1.47167 * 110.99907 * 207.02342 * 19 2 1 21 21 C 1.52904 * 108.50575 * 52.15220 * 20 19 2 22 22 C 1.50708 * 109.96393 * 50.38259 * 21 20 19 23 23 C 1.38682 * 118.49498 * 163.12564 * 22 21 20 24 24 C 1.38031 * 120.35242 * 179.84096 * 23 22 21 25 25 C 1.38263 * 119.82658 * 359.97438 * 24 23 22 26 26 C 1.38014 * 119.86924 * 0.07244 * 25 24 23 27 27 C 1.37842 * 121.66274 * 343.10796 * 22 21 20 28 28 C 1.46631 * 110.99961 * 330.00628 * 19 2 1 29 29 H 1.08994 * 109.47388 * 306.93998 * 1 2 3 30 30 H 1.09010 * 109.46963 * 66.93417 * 1 2 3 31 31 H 1.08997 * 109.47310 * 186.93270 * 1 2 3 32 32 H 1.09001 * 109.47445 * 63.54087 * 4 2 1 33 33 H 1.09001 * 109.47041 * 303.54591 * 4 2 1 34 34 H 1.00910 * 110.99761 * 64.18901 * 5 4 2 35 35 H 1.08992 * 109.46758 * 60.00134 * 6 5 4 36 36 H 1.09001 * 109.46994 * 299.99878 * 6 5 4 37 37 H 1.08996 * 109.47178 * 59.99940 * 9 7 6 38 38 H 1.09001 * 109.47238 * 180.02562 * 9 7 6 39 39 H 1.08998 * 109.47030 * 300.00164 * 9 7 6 40 40 H 1.09006 * 109.47185 * 54.99947 * 10 7 6 41 41 H 1.08994 * 109.47326 * 294.99881 * 10 7 6 42 42 H 0.97005 * 119.99972 * 180.28122 * 14 13 11 43 43 H 1.08999 * 109.62975 * 171.85726 * 20 19 2 44 44 H 1.08999 * 109.63300 * 292.24960 * 20 19 2 45 45 H 1.09001 * 109.38264 * 170.53551 * 21 20 19 46 46 H 1.09002 * 109.38655 * 290.33047 * 21 20 19 47 47 H 1.07998 * 119.82024 * 359.86025 * 23 22 21 48 48 H 1.07999 * 120.08634 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.06650 * 180.09880 * 25 24 23 50 50 H 1.08005 * 119.81062 * 180.02562 * 26 25 24 51 51 H 1.09002 * 109.30247 * 49.45007 * 28 19 2 52 52 H 1.08996 * 109.30452 * 168.83268 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5065 -0.7958 -1.2072 6 6 4.0443 -1.3071 -2.4751 7 6 5.5707 -1.3708 -2.3928 8 1 5.9610 -0.3906 -2.1189 9 6 5.9822 -2.3972 -1.3355 10 6 6.1378 -1.7839 -3.7525 11 6 7.6431 -1.7278 -3.7069 12 1 8.1451 -1.4279 -2.7989 13 6 8.3795 -2.0603 -4.8241 14 7 9.6930 -2.0061 -4.7860 15 14 7.5113 -2.5797 -6.3945 16 1 7.3238 -4.0528 -6.3923 17 1 6.1871 -1.9123 -6.4719 18 1 8.3329 -2.1870 -7.5674 19 7 2.0196 -0.6926 1.1994 20 6 3.3493 -0.1966 1.5889 21 6 3.2883 1.3279 1.6898 22 6 2.1170 1.7406 2.5437 23 6 2.0884 3.0322 3.0480 24 6 1.0324 3.4517 3.8317 25 6 -0.0026 2.5799 4.1151 26 6 0.0254 1.2940 3.6146 27 6 1.0871 0.8699 2.8288 28 6 1.0769 -0.5452 2.3129 29 1 -0.3634 0.6176 0.8213 30 1 -0.3633 0.4027 -0.9456 31 1 -0.3634 -1.0201 0.1240 32 1 1.7295 -0.1721 -2.1381 33 1 1.6258 -1.7289 -1.2815 34 1 3.8179 -1.3582 -0.4293 35 1 3.7513 -0.6429 -3.2880 36 1 3.6488 -2.3056 -2.6611 37 1 5.5919 -3.3774 -1.6093 38 1 7.0696 -2.4422 -1.2766 39 1 5.5781 -2.1029 -0.3669 40 1 5.7720 -1.1028 -4.5209 41 1 5.8190 -2.7997 -3.9857 42 1 10.2109 -2.2361 -5.5732 43 1 3.6282 -0.6167 2.5552 44 1 4.0833 -0.4877 0.8375 45 1 4.2107 1.6980 2.1374 46 1 3.1743 1.7523 0.6923 47 1 2.8965 3.7134 2.8260 48 1 1.0147 4.4584 4.2225 49 1 -0.8315 2.9045 4.7266 50 1 -0.7838 0.6138 3.8362 51 1 0.0731 -0.7969 1.9708 52 1 1.3607 -1.2236 3.1174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602531272.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:46 Heat of formation + Delta-G solvation = 29.687591 kcal Electronic energy + Delta-G solvation = -27036.613955 eV Core-core repulsion = 23614.533342 eV Total energy + Delta-G solvation = -3422.080613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93907 -38.24102 -36.63969 -34.21836 -33.31991 -32.30194 -31.33027 -30.62721 -29.06164 -27.57558 -26.38937 -25.01850 -23.96813 -23.36715 -22.37877 -21.73047 -21.40208 -19.15809 -18.56166 -17.11703 -16.76742 -16.40104 -15.87546 -15.66783 -15.26439 -14.95732 -14.52348 -14.35857 -14.07821 -13.82165 -13.47060 -13.38333 -13.15790 -13.04917 -12.61602 -12.58377 -12.29781 -12.21507 -12.01677 -11.96183 -11.66296 -11.60185 -11.52331 -11.36888 -11.17769 -10.98914 -10.94608 -10.67449 -10.42256 -10.29149 -9.76500 -9.69391 -9.38520 -9.02041 -9.00042 -8.80554 -8.48767 -8.43075 -8.06513 -5.99077 -3.95616 1.10857 1.13455 3.33643 3.41127 3.45186 3.49610 3.78554 4.38964 4.49698 4.49979 4.54271 4.68832 4.78279 4.88694 4.96826 4.99971 5.06143 5.19290 5.25227 5.33251 5.34728 5.38594 5.43277 5.49884 5.58488 5.63671 5.70091 5.75650 5.76445 5.80200 5.80965 5.88324 5.94812 5.99657 6.10581 6.17164 6.22073 6.23269 6.27204 6.41417 6.43622 6.52953 6.77577 6.81617 6.92657 6.97547 7.02045 7.11023 7.33628 7.38307 7.54361 7.72424 7.86499 8.60754 9.06881 9.64141 11.14375 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.025926 B = 0.002499 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.737289 B =11201.608107 C =11669.078199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.072 3.928 3 H 0.067 0.933 4 C 0.071 3.929 5 N -0.690 5.690 6 C 0.060 3.940 7 C -0.074 4.074 8 H 0.070 0.930 9 C -0.135 4.135 10 C -0.009 4.009 11 C -0.511 4.511 12 H 0.074 0.926 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.878 3.122 16 H -0.279 1.279 17 H -0.266 1.266 18 H -0.289 1.289 19 N -0.521 5.521 20 C 0.045 3.955 21 C -0.118 4.118 22 C -0.072 4.072 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.117 4.117 27 C -0.109 4.109 28 C 0.082 3.918 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.346 0.654 35 H 0.064 0.936 36 H 0.022 0.978 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.033 0.967 40 H 0.014 0.986 41 H 0.009 0.991 42 H 0.261 0.739 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.093 0.907 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.230 7.099 17.537 29.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.036 4.036 3 H 0.085 0.915 4 C -0.059 4.059 5 N -0.325 5.325 6 C -0.068 4.068 7 C -0.093 4.093 8 H 0.088 0.912 9 C -0.192 4.192 10 C -0.047 4.047 11 C -0.549 4.549 12 H 0.092 0.908 13 C -0.137 4.137 14 N -0.545 5.545 15 Si 0.706 3.294 16 H -0.205 1.205 17 H -0.191 1.191 18 H -0.215 1.215 19 N -0.243 5.243 20 C -0.083 4.083 21 C -0.156 4.156 22 C -0.072 4.072 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.136 4.136 27 C -0.111 4.111 28 C -0.046 4.046 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.169 0.831 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.052 0.948 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.124 0.876 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.111 0.889 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.934 7.179 17.115 28.733 hybrid contribution -0.669 -0.225 -0.574 0.910 sum -22.603 6.953 16.541 28.859 Atomic orbital electron populations 1.22080 0.95085 1.02120 1.02093 1.21886 0.94080 0.97603 0.90050 0.91517 1.21921 0.89023 0.98636 0.96315 1.60825 1.07738 1.57952 1.06032 1.22155 0.96611 0.96993 0.91079 1.21013 0.91390 0.99426 0.97505 0.91163 1.21747 1.02659 0.98164 0.96662 1.19603 0.97050 0.95604 0.92403 1.21140 0.89288 1.44979 0.99503 0.90836 1.25034 0.94694 0.95244 0.98688 1.69916 1.05040 1.49740 1.29828 0.86803 0.80097 0.79129 0.83385 1.20467 1.19075 1.21531 1.62692 1.02551 1.55465 1.03559 1.22508 0.91707 0.91931 1.02133 1.21112 0.95959 0.98912 0.99663 1.19696 0.95860 0.93625 0.98038 1.21145 0.98753 0.95628 0.98173 1.21081 0.94474 0.99586 0.98918 1.21056 0.98764 0.94091 1.00511 1.21058 0.98132 0.96223 0.98143 1.20413 0.94488 0.97531 0.98676 1.21330 0.98436 0.91212 0.93659 0.92176 0.92137 0.91882 0.91324 0.95098 0.83139 0.91781 0.95986 0.94085 0.91425 0.94788 0.96752 0.97290 0.92878 0.91040 0.87590 0.90187 0.89210 0.86174 0.86294 0.86343 0.86275 0.88892 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 7.78 37.16 0.29 -1.08 16 2 C 0.07 0.75 2.18 -67.71 -0.15 0.60 16 3 H 0.07 0.77 4.97 -51.93 -0.26 0.52 16 4 C 0.07 0.85 5.42 -3.83 -0.02 0.83 16 5 N -0.69 -9.53 5.47 -113.78 -0.62 -10.16 16 6 C 0.06 0.99 5.12 -3.82 -0.02 0.97 16 7 C -0.07 -1.46 2.54 -90.62 -0.23 -1.69 16 8 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 9 C -0.13 -2.47 8.77 37.16 0.33 -2.14 16 10 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 11 C -0.51 -14.45 8.96 -34.44 -0.31 -14.76 16 12 H 0.07 2.23 7.30 -52.49 -0.38 1.84 16 13 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.91 -28.09 13.96 55.43 0.77 -27.31 16 15 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 N -0.52 -5.28 4.66 -228.19 -1.06 -6.35 16 20 C 0.05 0.47 5.52 -3.73 -0.02 0.45 16 21 C -0.12 -1.20 5.16 -27.93 -0.14 -1.34 16 22 C -0.07 -0.73 5.40 -104.60 -0.56 -1.29 16 23 C -0.12 -1.13 9.66 -39.49 -0.38 -1.51 16 24 C -0.12 -1.05 10.05 -39.65 -0.40 -1.45 16 25 C -0.13 -1.03 10.05 -39.65 -0.40 -1.43 16 26 C -0.12 -0.99 9.65 -39.48 -0.38 -1.37 16 27 C -0.11 -1.03 4.38 -104.62 -0.46 -1.49 16 28 C 0.08 0.73 5.05 -5.15 -0.03 0.70 16 29 H 0.06 0.52 6.09 -51.93 -0.32 0.21 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.53 7.53 -51.93 -0.39 0.14 16 32 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 33 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.35 4.70 4.18 -39.29 -0.16 4.54 16 35 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 39 H 0.03 0.52 6.68 -51.93 -0.35 0.17 16 40 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 41 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.07 0.71 8.05 -51.93 -0.42 0.30 16 44 H 0.11 1.23 4.99 -51.93 -0.26 0.97 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 1.00 6.28 -51.93 -0.33 0.67 16 47 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 50 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 51 H 0.09 0.74 5.47 -51.93 -0.28 0.46 16 52 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -30.23 384.01 -11.81 -42.04 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -8.94 Total: 3.23 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -3.08 Total: -24.54 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.91 Total: -43.82 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.23 -11.81 -42.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602531272.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.729 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds