Wall clock time and date at job start Tue Mar 31 2020 11:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47532 * 2 1 4 4 C 1.52998 * 109.47454 * 239.99994 * 2 1 3 5 5 N 1.46897 * 109.47495 * 183.54235 * 4 2 1 6 6 C 1.46904 * 111.00268 * 188.14222 * 5 4 2 7 7 C 1.52995 * 109.47035 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46963 * 304.99930 * 7 6 5 9 9 C 1.52997 * 109.47751 * 64.99856 * 7 6 5 10 10 C 1.53002 * 109.46956 * 185.00012 * 7 6 5 11 11 C 1.50703 * 109.46935 * 174.99318 * 10 7 6 12 12 H 1.07993 * 120.00330 * 0.02562 * 11 10 7 13 13 C 1.37881 * 119.99911 * 179.97438 * 11 10 7 14 14 N 1.31508 * 119.99962 * 179.72630 * 13 11 10 15 15 Si 1.86805 * 119.99741 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.46645 * 269.71994 * 15 13 11 17 17 H 1.48490 * 109.47262 * 29.71696 * 15 13 11 18 18 H 1.48493 * 109.46997 * 149.72307 * 15 13 11 19 19 N 1.46902 * 109.46923 * 120.00215 * 2 1 3 20 20 C 1.47167 * 110.99907 * 207.02342 * 19 2 1 21 21 C 1.52904 * 108.50575 * 52.15220 * 20 19 2 22 22 C 1.50708 * 109.96393 * 50.38259 * 21 20 19 23 23 C 1.38682 * 118.49498 * 163.12564 * 22 21 20 24 24 C 1.38031 * 120.35242 * 179.84096 * 23 22 21 25 25 C 1.38263 * 119.82658 * 359.97438 * 24 23 22 26 26 C 1.38014 * 119.86924 * 0.07244 * 25 24 23 27 27 C 1.37842 * 121.66274 * 343.10796 * 22 21 20 28 28 C 1.46631 * 110.99961 * 330.00628 * 19 2 1 29 29 H 1.08994 * 109.47388 * 306.93998 * 1 2 3 30 30 H 1.09010 * 109.46963 * 66.93417 * 1 2 3 31 31 H 1.08997 * 109.47310 * 186.93270 * 1 2 3 32 32 H 1.09001 * 109.47445 * 63.54087 * 4 2 1 33 33 H 1.09001 * 109.47041 * 303.54591 * 4 2 1 34 34 H 1.00910 * 110.99761 * 64.18901 * 5 4 2 35 35 H 1.08992 * 109.46758 * 60.00134 * 6 5 4 36 36 H 1.09001 * 109.46994 * 299.99878 * 6 5 4 37 37 H 1.08996 * 109.47178 * 59.99940 * 9 7 6 38 38 H 1.09001 * 109.47238 * 180.02562 * 9 7 6 39 39 H 1.08998 * 109.47030 * 300.00164 * 9 7 6 40 40 H 1.09006 * 109.47185 * 54.99947 * 10 7 6 41 41 H 1.08994 * 109.47326 * 294.99881 * 10 7 6 42 42 H 0.97005 * 119.99972 * 180.28122 * 14 13 11 43 43 H 1.08999 * 109.62975 * 171.85726 * 20 19 2 44 44 H 1.08999 * 109.63300 * 292.24960 * 20 19 2 45 45 H 1.09001 * 109.38264 * 170.53551 * 21 20 19 46 46 H 1.09002 * 109.38655 * 290.33047 * 21 20 19 47 47 H 1.07998 * 119.82024 * 359.86025 * 23 22 21 48 48 H 1.07999 * 120.08634 * 179.97438 * 24 23 22 49 49 H 1.08002 * 120.06650 * 180.09880 * 25 24 23 50 50 H 1.08005 * 119.81062 * 180.02562 * 26 25 24 51 51 H 1.09002 * 109.30247 * 49.45007 * 28 19 2 52 52 H 1.08996 * 109.30452 * 168.83268 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5065 -0.7958 -1.2072 6 6 4.0443 -1.3071 -2.4751 7 6 5.5707 -1.3708 -2.3928 8 1 5.9610 -0.3906 -2.1189 9 6 5.9822 -2.3972 -1.3355 10 6 6.1378 -1.7839 -3.7525 11 6 7.6431 -1.7278 -3.7069 12 1 8.1451 -1.4279 -2.7989 13 6 8.3795 -2.0603 -4.8241 14 7 9.6930 -2.0061 -4.7860 15 14 7.5113 -2.5797 -6.3945 16 1 7.3238 -4.0528 -6.3923 17 1 6.1871 -1.9123 -6.4719 18 1 8.3329 -2.1870 -7.5674 19 7 2.0196 -0.6926 1.1994 20 6 3.3493 -0.1966 1.5889 21 6 3.2883 1.3279 1.6898 22 6 2.1170 1.7406 2.5437 23 6 2.0884 3.0322 3.0480 24 6 1.0324 3.4517 3.8317 25 6 -0.0026 2.5799 4.1151 26 6 0.0254 1.2940 3.6146 27 6 1.0871 0.8699 2.8288 28 6 1.0769 -0.5452 2.3129 29 1 -0.3634 0.6176 0.8213 30 1 -0.3633 0.4027 -0.9456 31 1 -0.3634 -1.0201 0.1240 32 1 1.7295 -0.1721 -2.1381 33 1 1.6258 -1.7289 -1.2815 34 1 3.8179 -1.3582 -0.4293 35 1 3.7513 -0.6429 -3.2880 36 1 3.6488 -2.3056 -2.6611 37 1 5.5919 -3.3774 -1.6093 38 1 7.0696 -2.4422 -1.2766 39 1 5.5781 -2.1029 -0.3669 40 1 5.7720 -1.1028 -4.5209 41 1 5.8190 -2.7997 -3.9857 42 1 10.2109 -2.2361 -5.5732 43 1 3.6282 -0.6167 2.5552 44 1 4.0833 -0.4877 0.8375 45 1 4.2107 1.6980 2.1374 46 1 3.1743 1.7523 0.6923 47 1 2.8965 3.7134 2.8260 48 1 1.0147 4.4584 4.2225 49 1 -0.8315 2.9045 4.7266 50 1 -0.7838 0.6138 3.8362 51 1 0.0731 -0.7969 1.9708 52 1 1.3607 -1.2236 3.1174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602531272.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:45 Heat of formation + Delta-G solvation = 12.525415 kcal Electronic energy + Delta-G solvation = -27037.358163 eV Core-core repulsion = 23614.533342 eV Total energy + Delta-G solvation = -3422.824821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66928 -39.09051 -37.94272 -35.56251 -34.39291 -33.83261 -32.44639 -31.34130 -29.90497 -29.31961 -27.54476 -26.11019 -24.98894 -24.30683 -23.33296 -23.03154 -22.20369 -20.66859 -19.48768 -18.90985 -17.82992 -17.26217 -16.72221 -16.52571 -16.39700 -16.09635 -15.66951 -15.50714 -15.29930 -14.85245 -14.75223 -14.55065 -14.27895 -14.05714 -13.89505 -13.50139 -13.46043 -13.30592 -13.21746 -12.93191 -12.88085 -12.78288 -12.52833 -12.31743 -12.29580 -12.16826 -12.06315 -11.91449 -11.78729 -11.66369 -11.43129 -11.23670 -11.06669 -10.97301 -10.72349 -9.66179 -9.49375 -9.33040 -9.07610 -8.24702 -6.26567 0.44755 0.47251 1.36249 1.38195 1.50079 2.38760 2.83488 3.01145 3.10534 3.31237 3.79066 3.86462 4.02538 4.09479 4.14782 4.17828 4.23992 4.25073 4.27765 4.33250 4.41285 4.46976 4.56248 4.61292 4.68916 4.72421 4.76501 4.78615 4.85233 4.87106 4.89340 4.96136 5.01150 5.03749 5.08065 5.13764 5.14696 5.24624 5.26694 5.32647 5.36931 5.40306 5.55263 5.57518 5.62792 5.72637 5.73036 5.75406 6.12137 6.13329 6.14861 6.28800 6.37767 6.60749 6.81040 7.36776 8.92008 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.025926 B = 0.002499 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.737289 B =11201.608107 C =11669.078199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.077 3.923 3 H 0.054 0.946 4 C 0.073 3.927 5 N -0.690 5.690 6 C 0.073 3.927 7 C -0.069 4.069 8 H 0.053 0.947 9 C -0.128 4.128 10 C -0.006 4.006 11 C -0.516 4.516 12 H 0.035 0.965 13 C 0.000 4.000 14 N -0.954 5.954 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.248 1.248 18 H -0.286 1.286 19 N -0.524 5.524 20 C 0.048 3.952 21 C -0.112 4.112 22 C -0.090 4.090 23 C -0.135 4.135 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.121 4.121 27 C -0.117 4.117 28 C 0.083 3.917 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.348 0.652 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.123 0.877 48 H 0.136 0.864 49 H 0.141 0.859 50 H 0.140 0.860 51 H 0.106 0.894 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.526 6.786 17.886 31.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 H 0.072 0.928 4 C -0.057 4.057 5 N -0.325 5.325 6 C -0.056 4.056 7 C -0.088 4.088 8 H 0.071 0.929 9 C -0.185 4.185 10 C -0.044 4.044 11 C -0.554 4.554 12 H 0.053 0.947 13 C -0.196 4.196 14 N -0.595 5.595 15 Si 0.772 3.228 16 H -0.193 1.193 17 H -0.171 1.171 18 H -0.212 1.212 19 N -0.246 5.246 20 C -0.080 4.080 21 C -0.150 4.150 22 C -0.090 4.090 23 C -0.153 4.153 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.140 4.140 27 C -0.118 4.118 28 C -0.045 4.045 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.171 0.829 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.141 0.859 48 H 0.154 0.846 49 H 0.159 0.841 50 H 0.157 0.843 51 H 0.124 0.876 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.254 6.870 17.485 31.475 hybrid contribution 0.393 -0.068 -0.560 0.687 sum -24.861 6.803 16.925 30.835 Atomic orbital electron populations 1.22022 0.93549 1.02658 1.02501 1.21789 0.95190 0.96569 0.89553 0.92811 1.21969 0.87490 0.98935 0.97281 1.60786 1.09184 1.57709 1.04858 1.21887 0.93910 0.97426 0.92360 1.20866 0.93791 0.98650 0.95491 0.92884 1.21649 1.00595 0.98258 0.97988 1.19561 0.93993 0.95939 0.94935 1.21454 0.91860 1.44000 0.98103 0.94653 1.26003 0.95372 0.95503 1.02736 1.70073 1.06923 1.51454 1.31096 0.85693 0.79490 0.79238 0.78426 1.19346 1.17123 1.21234 1.62676 1.02633 1.55294 1.04008 1.22418 0.91759 0.92079 1.01752 1.21005 0.96306 0.98671 0.99038 1.19766 0.96189 0.94269 0.98762 1.21318 0.99495 0.95698 0.98764 1.21357 0.94236 1.00615 0.98545 1.21387 0.99158 0.93930 1.00281 1.21336 0.98282 0.96784 0.97574 1.20513 0.94655 0.97614 0.99064 1.21382 0.98671 0.91106 0.93295 0.91934 0.91653 0.91143 0.91204 0.94904 0.82885 0.91873 0.95459 0.93445 0.94640 0.91817 0.96680 0.96663 0.92733 0.90725 0.88944 0.90320 0.90595 0.85883 0.84608 0.84141 0.84255 0.87645 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 7.78 71.98 0.56 -1.72 16 2 C 0.08 1.49 2.18 44.91 0.10 1.59 16 3 H 0.05 1.21 4.97 -2.39 -0.01 1.20 16 4 C 0.07 1.62 5.42 86.30 0.47 2.08 16 5 N -0.69 -18.17 5.47 -513.90 -2.81 -20.98 16 6 C 0.07 2.29 5.12 86.30 0.44 2.73 16 7 C -0.07 -2.68 2.54 -10.80 -0.03 -2.71 16 8 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 9 C -0.13 -4.65 8.77 71.98 0.63 -4.01 16 10 C -0.01 -0.30 3.52 29.85 0.10 -0.20 16 11 C -0.52 -29.94 8.96 25.60 0.23 -29.71 16 12 H 0.04 2.25 7.30 -2.91 -0.02 2.23 16 13 C 0.00 -0.01 5.47 84.66 0.46 0.45 16 14 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 15 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 19 N -0.52 -9.84 4.66 -875.86 -4.08 -13.92 16 20 C 0.05 0.97 5.52 86.22 0.48 1.45 16 21 C -0.11 -2.27 5.16 29.82 0.15 -2.12 16 22 C -0.09 -1.75 5.40 -19.85 -0.11 -1.86 16 23 C -0.13 -2.48 9.66 22.33 0.22 -2.26 16 24 C -0.13 -2.02 10.05 22.23 0.22 -1.80 16 25 C -0.13 -1.82 10.05 22.22 0.22 -1.60 16 26 C -0.12 -1.77 9.65 22.33 0.22 -1.55 16 27 C -0.12 -2.01 4.38 -19.86 -0.09 -2.10 16 28 C 0.08 1.31 5.05 85.59 0.43 1.74 16 29 H 0.06 0.94 6.09 -2.39 -0.01 0.92 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.07 0.98 7.53 -2.39 -0.02 0.96 16 32 H 0.07 1.53 8.09 -2.39 -0.02 1.52 16 33 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.35 8.98 4.18 -89.69 -0.38 8.61 16 35 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 36 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.03 1.49 6.95 -2.39 -0.02 1.48 16 39 H 0.06 1.91 6.68 -2.39 -0.02 1.89 16 40 H 0.01 0.70 7.20 -2.38 -0.02 0.69 16 41 H 0.02 0.70 7.57 -2.39 -0.02 0.68 16 42 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 43 H 0.07 1.44 8.05 -2.39 -0.02 1.42 16 44 H 0.09 2.11 4.99 -2.39 -0.01 2.10 16 45 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.08 1.73 6.28 -2.39 -0.01 1.71 16 47 H 0.12 2.05 8.06 -2.91 -0.02 2.02 16 48 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 49 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 50 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 51 H 0.11 1.39 5.47 -2.39 -0.01 1.37 16 52 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -66.05 384.01 0.47 -65.58 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.46 Total: 24.43 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 4.72 Total: -41.58 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -6.59 Total: -95.41 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -66.05 0.47 -65.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602531272.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.103 kcal (2) G-P(sol) polarization free energy of solvation -66.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds