Wall clock time and date at job start Tue Mar 31 2020 11:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46820 * 2 1 4 4 C 1.53000 * 109.47384 * 240.00260 * 2 1 3 5 5 C 1.50703 * 109.47383 * 64.99335 * 4 2 1 6 6 H 1.08002 * 119.99658 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00076 * 179.72373 * 5 4 2 8 8 N 1.31517 * 120.00157 * 0.27874 * 7 5 4 9 9 Si 1.86797 * 119.99941 * 180.27930 * 7 5 4 10 10 H 1.48499 * 109.47401 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47334 * 120.00084 * 9 7 5 12 12 H 1.48496 * 109.47238 * 240.00259 * 9 7 5 13 13 C 1.52994 * 109.47253 * 119.99753 * 2 1 3 14 14 N 1.46893 * 109.47382 * 295.00433 * 13 2 1 15 15 C 1.46900 * 111.00055 * 179.97438 * 14 13 2 16 16 H 1.08996 * 110.27550 * 34.30299 * 15 14 13 17 17 C 1.54599 * 110.30881 * 272.20906 * 15 14 13 18 18 C 1.55108 * 102.84251 * 219.18863 * 17 15 14 19 19 N 1.48532 * 103.28761 * 37.30506 * 18 17 15 20 20 C 1.46898 * 111.00048 * 200.33191 * 19 18 17 21 21 H 1.09007 * 109.46723 * 59.88855 * 20 19 18 22 22 C 1.52998 * 109.47373 * 299.88940 * 20 19 18 23 23 C 1.50700 * 109.47274 * 179.88301 * 20 19 18 24 24 C 1.38241 * 119.99316 * 45.39116 * 23 20 19 25 25 C 1.38237 * 119.99402 * 179.73907 * 24 23 20 26 26 C 1.38237 * 119.99826 * 0.55833 * 25 24 23 27 27 C 1.38234 * 120.00239 * 359.69458 * 26 25 24 28 28 C 1.38228 * 119.99798 * 0.02746 * 27 26 25 29 29 C 1.47896 * 105.81910 * 320.84689 * 19 18 17 30 30 H 1.09011 * 109.46652 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47462 * 299.99483 * 1 2 3 32 32 H 1.09004 * 109.47088 * 60.00417 * 1 2 3 33 33 H 1.09001 * 109.46893 * 305.00097 * 4 2 1 34 34 H 1.08995 * 109.47597 * 184.99867 * 4 2 1 35 35 H 0.96998 * 119.99817 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.46957 * 55.00745 * 13 2 1 37 37 H 1.09001 * 109.47037 * 175.00224 * 13 2 1 38 38 H 1.00898 * 111.00413 * 303.95568 * 14 13 2 39 39 H 1.09000 * 110.72694 * 337.48000 * 17 15 14 40 40 H 1.09000 * 110.72325 * 100.77078 * 17 15 14 41 41 H 1.09000 * 110.59165 * 278.86908 * 18 17 15 42 42 H 1.09000 * 110.68256 * 155.78489 * 18 17 15 43 43 H 1.09002 * 109.47174 * 65.86749 * 22 20 19 44 44 H 1.08995 * 109.47404 * 185.87013 * 22 20 19 45 45 H 1.09005 * 109.46485 * 305.86923 * 22 20 19 46 46 H 1.07997 * 120.00135 * 359.97438 * 24 23 20 47 47 H 1.07998 * 120.00158 * 180.26964 * 25 24 23 48 48 H 1.08000 * 119.99765 * 179.71965 * 26 25 24 49 49 H 1.08000 * 119.99750 * 180.02562 * 27 26 25 50 50 H 1.08009 * 119.99746 * 179.97438 * 28 27 26 51 51 H 1.08998 * 109.91992 * 265.97558 * 29 19 18 52 52 H 1.09007 * 110.08131 * 144.77793 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9977 -0.3990 -3.7280 8 7 2.6810 -1.5160 -3.8509 9 14 1.5102 0.5698 -5.2489 10 1 0.7526 1.7807 -4.8428 11 1 2.7315 0.9759 -5.9898 12 1 0.6594 -0.2768 -6.1233 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6271 3.6671 16 1 3.0828 -1.1141 3.4852 17 6 1.0823 -1.6592 4.1549 18 6 1.1248 -1.4902 5.6962 19 7 1.3097 -0.0272 5.8742 20 6 1.8465 0.2772 7.2073 21 1 2.8104 -0.2163 7.3322 22 6 0.8738 -0.2256 8.2759 23 6 2.0229 1.7671 7.3496 24 6 1.0193 2.6242 6.9383 25 6 1.1788 3.9906 7.0738 26 6 2.3466 4.5003 7.6099 27 6 3.3523 3.6434 8.0163 28 6 3.1904 2.2768 7.8861 29 6 2.2526 0.3919 4.8147 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6055 -1.7197 -1.2952 34 1 3.1264 -0.7994 -1.2057 35 1 2.9314 -1.8369 -4.7313 36 1 1.6055 -1.7198 1.2951 37 1 3.1264 -0.7993 1.2055 38 1 1.9880 0.9873 2.3967 39 1 0.0918 -1.4194 3.7682 40 1 1.3756 -2.6690 3.8678 41 1 1.9667 -2.0386 6.1189 42 1 0.1870 -1.8170 6.1454 43 1 0.8262 -1.3140 8.2406 44 1 1.2194 0.0912 9.2598 45 1 -0.1172 0.1877 8.0883 46 1 0.1091 2.2261 6.5147 47 1 0.3930 4.6601 6.7566 48 1 2.4731 5.5681 7.7116 49 1 4.2645 4.0417 8.4355 50 1 3.9763 1.6073 8.2033 51 1 3.2715 0.3890 5.2020 52 1 1.9945 1.3886 4.4568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543378.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:57 Heat of formation + Delta-G solvation = 14.454488 kcal Electronic energy + Delta-G solvation = -26289.845462 eV Core-core repulsion = 22867.104292 eV Total energy + Delta-G solvation = -3422.741170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17587 -38.71478 -36.58475 -34.63841 -32.89582 -31.63513 -31.07166 -29.77851 -29.39774 -27.59205 -26.57235 -24.65991 -24.02752 -22.81220 -22.35052 -21.78239 -20.31962 -20.16639 -18.94970 -17.09724 -16.39086 -16.35808 -15.88117 -15.53562 -15.10301 -14.72826 -14.49576 -14.19047 -14.02617 -13.95647 -13.54022 -13.29357 -13.22073 -13.03421 -12.65575 -12.53886 -12.21504 -12.18294 -11.77192 -11.60845 -11.53643 -11.41359 -11.35252 -11.14329 -11.09262 -10.88138 -10.87554 -10.81112 -10.63987 -10.25681 -10.15391 -9.66736 -9.11027 -9.09128 -8.91815 -8.90672 -8.60360 -8.31139 -8.06905 -5.95760 -3.96573 1.14382 1.24007 3.33430 3.40966 3.45342 3.54672 3.78567 4.33895 4.39240 4.51295 4.55253 4.69479 4.79160 4.82361 4.95869 4.98362 5.04278 5.16914 5.22582 5.29859 5.38268 5.40157 5.44158 5.48842 5.54079 5.62009 5.68010 5.76859 5.80025 5.85451 5.88405 5.91028 5.95651 5.97887 6.20085 6.24022 6.29230 6.35359 6.40716 6.47218 6.59309 6.71708 6.76203 6.82402 6.91844 7.06722 7.22820 7.24683 7.44418 7.68693 7.73344 7.88453 8.04946 8.49232 9.10177 9.66797 11.15880 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018333 B = 0.002330 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.926662 B =12012.948978 C =12906.254192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.674 5.674 15 C 0.076 3.924 16 H 0.045 0.955 17 C -0.112 4.112 18 C 0.037 3.963 19 N -0.502 5.502 20 C 0.111 3.889 21 H 0.047 0.953 22 C -0.140 4.140 23 C -0.078 4.078 24 C -0.088 4.088 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.118 4.118 29 C 0.042 3.958 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.016 0.984 34 H 0.011 0.989 35 H 0.258 0.742 36 H 0.065 0.935 37 H 0.022 0.978 38 H 0.337 0.663 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.131 0.869 47 H 0.121 0.879 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.116 0.884 51 H 0.041 0.959 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 5.194 27.982 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.306 5.306 15 C -0.035 4.035 16 H 0.063 0.937 17 C -0.151 4.151 18 C -0.091 4.091 19 N -0.226 5.226 20 C 0.003 3.997 21 H 0.065 0.935 22 C -0.197 4.197 23 C -0.078 4.078 24 C -0.106 4.106 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.142 4.142 28 C -0.137 4.137 29 C -0.086 4.086 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.156 0.844 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.149 0.851 47 H 0.139 0.861 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.134 0.866 51 H 0.059 0.941 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.884 5.074 27.850 28.371 hybrid contribution 1.745 0.236 -0.924 1.989 sum -0.139 5.310 26.926 27.445 Atomic orbital electron populations 1.21578 0.95675 1.00506 1.00150 1.21187 0.96038 0.98838 0.93997 0.92918 1.19126 0.95843 0.95586 0.90519 1.21283 1.34297 1.08296 0.90993 0.92509 1.25026 0.95371 0.95127 0.99116 1.69980 1.39208 1.21342 1.23232 0.86577 0.78209 0.80175 0.83297 1.19734 1.21150 1.21088 1.22187 0.96903 0.97792 0.89548 1.60659 1.63663 1.05365 1.00899 1.22356 0.96165 0.94573 0.90402 0.93716 1.22595 1.01162 0.98029 0.93285 1.23261 1.00825 0.88014 0.97005 1.64791 1.42810 1.13930 1.01091 1.20741 0.96892 0.91751 0.90329 0.93529 1.21825 0.99843 1.00865 0.97193 1.19739 0.94312 0.94691 0.99103 1.21079 0.99217 0.92610 0.97702 1.21225 0.97749 0.95568 0.99629 1.21159 0.94049 0.99613 0.99253 1.21065 0.99061 0.93380 1.00694 1.21016 0.97020 0.95422 1.00228 1.22985 0.93990 0.99839 0.91787 0.94241 0.93845 0.92874 0.96592 0.97016 0.93192 0.91618 0.95976 0.84418 0.89260 0.91532 0.94130 0.89906 0.92323 0.92200 0.91367 0.85148 0.86114 0.86360 0.86334 0.86576 0.94115 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.91 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.12 4.92 -3.83 -0.02 1.10 16 14 N -0.67 -9.79 5.73 -105.30 -0.60 -10.40 16 15 C 0.08 0.94 3.31 -66.35 -0.22 0.72 16 16 H 0.04 0.58 7.84 -51.93 -0.41 0.18 16 17 C -0.11 -1.29 6.75 -24.78 -0.17 -1.46 16 18 C 0.04 0.35 5.45 -1.81 -0.01 0.34 16 19 N -0.50 -5.11 4.57 -223.77 -1.02 -6.14 16 20 C 0.11 1.00 1.96 -68.87 -0.13 0.86 16 21 H 0.05 0.42 7.80 -51.93 -0.40 0.01 16 22 C -0.14 -1.07 8.83 37.16 0.33 -0.74 16 23 C -0.08 -0.74 4.11 -104.62 -0.43 -1.17 16 24 C -0.09 -0.86 9.21 -39.58 -0.36 -1.23 16 25 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 27 C -0.12 -1.05 10.05 -39.59 -0.40 -1.44 16 28 C -0.12 -1.05 9.67 -39.59 -0.38 -1.43 16 29 C 0.04 0.47 5.56 -2.75 -0.02 0.46 16 30 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 31 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 32 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.02 0.39 8.07 -51.93 -0.42 -0.03 16 38 H 0.34 4.76 8.05 -39.29 -0.32 4.44 16 39 H 0.09 1.17 8.06 -51.93 -0.42 0.75 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.04 0.37 8.00 -51.93 -0.42 -0.05 16 42 H 0.08 0.73 7.79 -51.93 -0.40 0.33 16 43 H 0.06 0.41 7.26 -51.93 -0.38 0.03 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.13 1.32 7.89 -52.49 -0.41 0.90 16 47 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 48 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 50 H 0.12 0.87 8.00 -52.48 -0.42 0.45 16 51 H 0.04 0.45 7.69 -51.93 -0.40 0.05 16 52 H 0.08 1.03 7.49 -51.92 -0.39 0.64 16 LS Contribution 407.35 15.07 6.14 6.14 Total: -1.00 -30.00 407.35 -12.49 -42.49 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -9.70 Total: 1.14 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -3.01 Total: -23.61 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.89 Total: -43.04 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.00 -12.49 -42.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543378.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.947 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds